KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:27:44 2014  Check: 00 ..

 Name: ENSBTAP00000025983/1-201  Len:    280  Check:  6820  Weight:  1.00
 Name: ENSP00000329584/1-274     Len:    280  Check:  5033  Weight:  1.00
 Name: bmy_01516T0/1-275         Len:    280  Check:  9165  Weight:  1.00
 Name: BACU017882/1-275          Len:    280  Check:  8402  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000025983/1-201  MKLPKGVKNP VFYGQQPEKK VPMSSGHEIK QTPVVLAMLK GPGPAKYLRP 
ENSP00000329584/1-274     MKLPKGTRSS VYFAQHPEKE -PLPSRQEVK QTPVIMAKIK GPGPAKYLRP 
bmy_01516T0/1-275         MKLPKGVRNP VFYGQQPERK VQVPSGQEVK QTPVVLATIK GPGPAKYLRP 
BACU017882/1-275          MKLPKGVRNP VFYGQQPERK VQVPSGQEVK QTPVVLATIK GPGPAKYLRP 


                          51                                                 100
ENSBTAP00000025983/1-201  SCTGYIDHDV SMFQEPAYTL HAWHPEKRIM DIRSPGPCYF LDPKITRFGM 
ENSP00000329584/1-274     SCTGYIDHDI SMFKAPAYTL HSRHSEKRMV CHSSPGPCYL LDPKITRFGM 
bmy_01516T0/1-275         SCTGYTDHDV SMFQEPAYTL HTRHSERRIM DICNPGPCYF LDPKITRFGM 
BACU017882/1-275          SCTGYTDHDV SMFQEPAYTL HTRHWEKRIM DICNPGPCYF LDPKITRFGM 


                          101                                                150
ENSBTAP00000025983/1-201  ASCPQVPMAE HISNLPWPPW TRTGSTRICQ EAPDRPHTPG QSRPSIRTAA 
ENSP00000329584/1-274     SSCPQVPMEE RISNLRLNPT LAS-----CQ YYFEKIHPPG ERRAPQYTFG 
bmy_01516T0/1-275         SSCPQVPMAE RISNLRLSPT LAS-----CH YHLEKTHPPG ERRAPKYTFG 
BACU017882/1-275          SSCPQVPMAE RISNLRLSPT LAS-----CH YHLEKTHPPG ERRAPKYTFG 


                          151                                                200
ENSBTAP00000025983/1-201  LSIAW----- ---------- ----PNALAT RWTTHLGLA- ---------- 
ENSP00000329584/1-274     YRRPYRVMDL NPAPNQYQMP LLLGPNTPVS RAAPCYSLAS RDKNWFYKED 
bmy_01516T0/1-275         YRCPYRVMDP NPGPNQYQLP VLLGPNLPAN RAAPCYSLSP LDKNWFYKED 
BACU017882/1-275          YRCPYRVMDP NPGPNQYQLP LLLGPNLPAN RAAPCYSLSP LDKNWFYKED 


                          201                                                250
ENSBTAP00000025983/1-201  ----PAPTMS SRSG------ ----HTSPAR LLSPWASSTR PTYAR----- 
ENSP00000329584/1-274     VAGGPGPTTY ARPEPSIYQN RSPTYSMAKR FAYPLDLTPR PGPGSHEVQQ 
bmy_01516T0/1-275         VAGGPGPAMH ARPEPSVYQN RSPMYSMARR FAYPVDHTPR PGPGSHDVQQ 
BACU017882/1-275          VAGGPGPAMH ARPEPSVYQN RSPMYSMARR FAYPVDHTPR PGPGSHDVQQ 


                          251                                                300
ENSBTAP00000025983/1-201  ---------- ---------- ---------- 
ENSP00000329584/1-274     VTVHKPHIPA FTMGIKHSLH LCPLVIDIRD 
bmy_01516T0/1-275         VTVHKSRTPA FTMGIKHSPH LCPLIVDIHD 
BACU017882/1-275          VTVHKSRMPA FTMGIKHSPH LCPLIVDIHD