KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:42 2014 Check: 00 .. Name: ENSTTRP00000005747/1-636 Len: 668 Check: 3418 Weight: 1.00 Name: BACU019111/1-581 Len: 668 Check: 7486 Weight: 1.00 Name: bmy_14258T0/1-427 Len: 668 Check: 4191 Weight: 1.00 Name: ENSP00000271417/1-639 Len: 668 Check: 3214 Weight: 1.00 Name: ENSBTAP00000025969/1-640 Len: 668 Check: 9579 Weight: 1.00 // 1 50 ENSTTRP00000005747/1-636 MDRVELGWV- ALWLTAIAGG LQVTVPDKKK VAMLFQPTVL RCHFSTSSHQ BACU019111/1-581 ---------- SFYFAAIAGG LQVTVPDKKK VAMLFQPTVL RCHFSTSSHQ bmy_14258T0/1-427 ---------- ---------- ---------- ---------- ---------- ENSP00000271417/1-639 MDRVLLRWIS LFWLTAMVEG LQVTVPDKKK VAMLFQPTVL RCHFSTSSHQ ENSBTAP00000025969/1-640 MDRVVMAWVA VLWLTAMAEG LQVTVPDKKK VAMLFQPTVL HCRFSTSSHQ 51 100 ENSTTRP00000005747/1-636 PAVVQWKFKS YCQDRMGESL GMSSPRAQSL SKRNLEWDPY LDCLDSRRTV BACU019111/1-581 PAVVQWKFKS YCQDRMGESL GMSSPRAQSL SKRNLEWDPY LDCLDSRRTV bmy_14258T0/1-427 ---------- ---------- ---------- ---------- ---------- ENSP00000271417/1-639 PAVVQWKFKS YCQDRMGESL GMSSTRAQSL SKRNLEWDPY LDCLDSRRTV ENSBTAP00000025969/1-640 PAVVQWKFKS YCQDRMGESL GMSSPRTQSL SKRNLEWDPY LDCLDSRRTV 101 150 ENSTTRP00000005747/1-636 RVVASKQGST VTLGDFYRGR EITIVHDADL QIGKLMWGDS GLYYCIITTP BACU019111/1-581 RVVASKQGST VTLGDFYRGR EITIVHDADL QIGKLMWGDS GLYYCIITTP bmy_14258T0/1-427 ---------- ---------- ---------- ---------- ---------- ENSP00000271417/1-639 RVVASKQGST VTLGDFYRGR EITIVHDADL QIGKLMWGDS GLYYCIITTP ENSBTAP00000025969/1-640 RVVASKQGST VTLGDFYRGR EITIVHDADL QIGKLMWGDS GLYYCIITTP 151 200 ENSTTRP00000005747/1-636 DDLEGKNEDS VELLVLGRTG LLADLLPSFA VEIMPXXXXX XXXXXXXXXX BACU019111/1-581 DDLEGKNEDS VELLVLGRTG LLADLLPSFA VEIMPEHTHT HTHTHTHMHT bmy_14258T0/1-427 ---------- ---------- ---------- ---------- ---------- ENSP00000271417/1-639 DDLEGKNEDS VELLVLGRTG LLADLLPSFA VEIMPEWVFV GLVLLGVFLF ENSBTAP00000025969/1-640 DDLEGKNEDS VEVLVLGRTG LLADLLPSFA VEIMPEWVFV GLVILGVFLF 201 250 ENSTTRP00000005747/1-636 XXXXXXXXXX XXXXXXXXXX XXXXXXX--- --XXXXXXXX YEAGKAAKAG BACU019111/1-581 HTPAPEHTSR SSLKHTLRNF WCEGCGGWDD VISSSSPSTV YEAGKAAKAG bmy_14258T0/1-427 ---------- ---------- ---------- ---------- YEAGKAAKAG ENSP00000271417/1-639 FVLVGICWCQ CCPHSCCCYV RCPCCPD--- --SCCCPQAL YEAGKAAKAG ENSBTAP00000025969/1-640 FVLVGICWCQ CCPHSCCCYI RCPCCPD--- --SCCCPQAL YEAGKAAKAG 251 300 ENSTTRP00000005747/1-636 YPPSVSGVPG PYSIPSVPLG GAPASGVLMD KPHPPPLAPS DSTGGSHSVR BACU019111/1-581 YPPSVSGVPG PYSIPSVPLG GAPASGVLMD KPHPPPLAPS DSTGGSHSVR bmy_14258T0/1-427 YPPSVSGVPG PYSIPSVPLG GAPASGVLMD KPHPPPLAPS DSTGGSHSVR ENSP00000271417/1-639 YPPSVSGVPG PYSIPSVPLG GAPSSGMLMD KPHPPPLAPS DSTGGSHSVR ENSBTAP00000025969/1-640 YPPSVSGVPG PYSIPSVPLG GAPSSGMLMD KPHPPPLAPS DSTGGSHSVR 301 350 ENSTTRP00000005747/1-636 KGYRIQADKE RDSMKVLYYV EKELAQFDPA RRMRGRYNNT ISELSSLHEE BACU019111/1-581 KGYRIQADKE RDSMKVLYYV EKELAQFDPA RRMRGRYNNT ISELSSLHEE bmy_14258T0/1-427 KGYRIQADKE RDSMKVLYYV EKELAQFDPA RRMRGRYNNT ISELSSLHEE ENSP00000271417/1-639 KGYRIQADKE RDSMKVLYYV EKELAQFDPA RRMRGRYNNT ISELSSLHEE ENSBTAP00000025969/1-640 KGYRIQADKE RDSMKVLYYV EKELAQFDPA RRMRSRYNNT ISELSSLHEE 351 400 ENSTTRP00000005747/1-636 DSSFRQSYHQ MRSKQFPVSG DLESNPDYWS GVMRGSSGPS RGPSAMEYNK BACU019111/1-581 DSSFRQSYHQ MRSKQFPVSG DLESNPDYWS GVMRGSSGAS RGPSAMEYNK bmy_14258T0/1-427 DSSFRQSYHQ MRSKQFPVSG DLESNPDYWS GVMRGSSGAS RGPSAMEYNK ENSP00000271417/1-639 DSNFRQSFHQ MRSKQFPVSG DLESNPDYWS GVMGGSSGAS RGPSAMEYNK ENSBTAP00000025969/1-640 DSSLRQSYHQ MRNKQFPVSG DLESNPDYWS GVMGGSSGAS RGPSAMEYNK 401 450 ENSTTRP00000005747/1-636 EDLESFRHSQ QRSKSEMLSR K-FATGVPAV SMDELAAFAD S-GPRSRRAD BACU019111/1-581 EDLESFRHSQ QRSKSEMLSR KNFATGVPAV SMDELAAFAD SYGPRSRRAD bmy_14258T0/1-427 EDLESFRHSQ QRSKSEMLSR KNFATGVPAV SMDELAAFAD SYGPRSRRAD ENSP00000271417/1-639 EDRESFRHSQ PRSKSEMLSR KNFATGVPAV SMDELAAFAD SYGQRPRRAD ENSBTAP00000025969/1-640 EDRESFRHSQ QRSKSEMLSR KNFATGVPAV SMDELAAFAD SYGPRSRRAD 451 500 ENSTTRP00000005747/1-636 GNNHEARGRS RFERSEARAH GGFYQDGSLE EYYGQRSRSR EPLTDADRGW BACU019111/1-581 GNNHEARGGS RFERSEARAH GGFYQDGSLE EYYGQRSRSR EPLT------ bmy_14258T0/1-427 GNNHEARGGS RFERSEARAH GGFYQDGSLE EYYGQRSRSR EPLTDADRGW ENSP00000271417/1-639 GNSHEARGGS RFERSESRAH SGFYQDDSLE EYYGQRSRSR EPLTDADRGW ENSBTAP00000025969/1-640 GNKQDLRGGS RFERSEARAH GGLYQDGSLE EYYGPRSRSR EPLTDADRGW 501 550 ENSTTRP00000005747/1-636 SYSPPRRRPP DDAHLPRLVS RTPGAVPKYD HSFRGAGVER QALPEGASRG BACU019111/1-581 ---------- ---------- ---------- ---------- -------XRS bmy_14258T0/1-427 SYSPPRRRPP DDAHLPRLVS RTPGAAPKYD HSFRGAGVER QALPEGASRG ENSP00000271417/1-639 AFSPARRRPA EDAHLPRLVS RTPGTAPKYD HSYLGSARER QARPEGASRG ENSBTAP00000025969/1-640 SYSPPRRRPP DDAHLPRLVS RTPGTTPKYD HSFRGSGLER QVRPEGASRG 551 600 ENSTTRP00000005747/1-636 GSLETPSKLS AQLGPRSASY YAWSPPSTYK EGTPQGEEED APDDALPPYS BACU019111/1-581 GSLETPSKLS AQLGPRSASY YAWSPPSTYK EGTPQGEEED APDDALPPYS bmy_14258T0/1-427 GSLETPSKLS AQLGPRSASY YAWSPPSTYK EGTPPGEEED APDDALPPYS ENSP00000271417/1-639 GSLETPSKRS AQLGPRSASY YAWSPPGTYK AGSSQDDQED ASDDALPPYS ENSBTAP00000025969/1-640 GSLETPSKLS SQLGPLSASY YAWSPPATYE AGAPPDDEED TPDDTLPPYS 601 650 ENSTTRP00000005747/1-636 ERELSRGPSY RGRDLPYHSN SEKRRKKE-P AKKTSDFP-- ---------- BACU019111/1-581 ELELSRGPSY RGRDLPYHSN SEKRRKKE-P AKKTSDFP-- ---------- bmy_14258T0/1-427 ELELSRGPSY RGRDLPYHSN SEKKRKKE-P AKKTRRLSLG HQGLSLSSPL ENSP00000271417/1-639 ELELTRGPSY RGRDLPYHSN SEKKRKKE-P AKKTNDFP-- ---------- ENSBTAP00000025969/1-640 ELELSRGPSY RGRDLPYHSN SEKKRKKETP AKKTSDFP-- ---------- 651 700 ENSTTRP00000005747/1-636 --------TR MSL---VV BACU019111/1-581 --------TR MSL---VV bmy_14258T0/1-427 LDSPQVGATR RALPPSAL ENSP00000271417/1-639 --------TR MSL---VV ENSBTAP00000025969/1-640 --------TR MSL---VV