KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:26:27 2014  Check: 00 ..

 Name: ENSBTAP00000025505/1-222  Len:    222  Check:  2567  Weight:  1.00
 Name: bmy_15925T0/1-222         Len:    222  Check:  3189  Weight:  1.00
 Name: BACU019240/1-222          Len:    222  Check:  3638  Weight:  1.00
 Name: ENSTTRP00000006522/1-222  Len:    222  Check:  3188  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000025505/1-222  MALSVETESH IYRALRTVSG AAAHLVALGF TIFVAVLARP GSSLFSWHPV 
bmy_15925T0/1-222         MALSVETESH IYRALRTASG AAAHIVALGF TIFVAVLARP GSSLFSWHPV 
BACU019240/1-222          MALSVETESH IYRALRTASG AAAHIVALGF TIFVAVLARP GSSLFSWHPV 
ENSTTRP00000006522/1-222  MALSVETESH IYRALRTASG AAAHIVALGF TIFVAVLARP GSSLFSWHPV 


                          51                                                 100
ENSBTAP00000025505/1-222  LMSLAFSFLM TEALLVFSPE SSLLRSLSRK GRARCHWVLQ LLALLCALLG 
bmy_15925T0/1-222         LMSLAFSFLM TEALLVFSPE SSLLHSLSRK GRARCHWVLQ LLALLCALLG 
BACU019240/1-222          LMSLAFSFLM TEALLVFSPE SSLLRSLSRK GRARCHWVLQ LLALLCALLG 
ENSTTRP00000006522/1-222  LMSLAFSFLM TEALLVFSPE SSLLRSLSRK GRARCHWVLQ LLALLCALLG 


                          101                                                150
ENSBTAP00000025505/1-222  LGLVILHKEQ LGKAHLATWH GRAGLLAVLW AGLQCSGGVG LLYPKLLPRW 
bmy_15925T0/1-222         LGLVILHKEQ LGKAHLATWH GRTGLLAVLW AGLQCSGGVG LLYPKLLPRW 
BACU019240/1-222          LGLVILQKEQ LGKAHLATWH GRAGLLAVLW AGLQCSGGVG LLYPKLLPRW 
ENSTTRP00000006522/1-222  LGLVILHKEQ LGKAHLATWH GRAGLLAVLW AGLQCSGGVG LLYPKLLPRW 


                          151                                                200
ENSBTAP00000025505/1-222  PLAKLKLYHA TSGLVGYLLG GASLLLGMCS LWFTATVTGG VWYLAVLCPV 
bmy_15925T0/1-222         PLAKLKLYHA TSGLVGYLLG SAXLLLGMCS LWFTATVTGG VWYLAVLCPV 
BACU019240/1-222          PLAKLKLYHA TSGLVGYLLG SASLLLGMCS LWFTATVTGG VWYLAVLCPV 
ENSTTRP00000006522/1-222  PLAKLKLYHA TSGLVGYLLG SASLLLGMCS LWFTATVTGG VWYLAVLCPV 


                          201                                                250
ENSBTAP00000025505/1-222  ITSLVIMNQV SNAYLYRKRI QP 
bmy_15925T0/1-222         VTSLVIMNQV SNAYLYRKRI QP 
BACU019240/1-222          VTSLVIMNQV SNAYLYRKRI QP 
ENSTTRP00000006522/1-222  VTSLVIMNQV SNAYLYRKRI QP