KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:35 2014 Check: 00 .. Name: ENSP00000373918/1-739 Len: 771 Check: 1107 Weight: 1.00 Name: ENSBTAP00000025254/1-739 Len: 771 Check: 1048 Weight: 1.00 Name: bmy_13577T0/1-732 Len: 771 Check: 6009 Weight: 1.00 Name: ENSTTRP00000000315/1-661 Len: 771 Check: 2968 Weight: 1.00 Name: BACU005839/1-739 Len: 771 Check: 181 Weight: 1.00 // 1 50 ENSP00000373918/1-739 MPSPRPVLLR GARAALLLLL PPRLLARPSL LLRRSLSAAS CPPISLPAAA ENSBTAP00000025254/1-739 MPSLRPALLR AARAALLPSP PPGLPARPPL LPCRPISKPA RVPTWFPAAA bmy_13577T0/1-732 MPSLRPALLR AARAALLLSP PPRLPARPPL LPCRPISKPA RAPTSFPAAA ENSTTRP00000000315/1-661 ---------- ---------- ---------- ---------- ---------- BACU005839/1-739 MPSLRPALLR AARAALLLSP PPRLPARPPL LPCRPISKPA RAPTSFPAAA 51 100 ENSP00000373918/1-739 SRSSMDGAGA EEVLAPLRLA VRQQGDLVRK LKEDKAPQVD VDKAVAELKA ENSBTAP00000025254/1-739 SRSSMDGAGA EEVLAPLRLA VRQQGDLVRK LKEDKAPQVD VDKAVAELKA bmy_13577T0/1-732 SRSSMDGAGT EEVLAPLRLA VRQQGDLVRK LKEDKAPQVD VDKAVAELKA ENSTTRP00000000315/1-661 ---------- ---------- VRQQGDLVRK LKEDKAPQVD VDKAVAELKA BACU005839/1-739 SRSSMDGAGA EEVLAPLRLA VRQQGDLVRK LKEDKAPQVD VDKAVAELKA 101 150 ENSP00000373918/1-739 RKRVLEAKEL ALQPKDDIVD RAKMEDTLKR RFFYDQAFAI YGGVSGLYDF ENSBTAP00000025254/1-739 RKRILEAKEL ALQPKDDVVD RAKMEDTLKR RFFYDQAFAI YGGVSGLYDF bmy_13577T0/1-732 RKRVLEAKEL ALQPKDDVVD RAKMEDTLKR RFFYDQAFAI YGA------- ENSTTRP00000000315/1-661 RKRVLEAKEL ALQPKDDVVD RAKMEDTLKR RFFYDQAFAI YGGVSGLYDF BACU005839/1-739 RKRVLEAKEL ALQPKDDVVD RAKMEDTLKR RFFYDQAFAI YGGVSGLYDF 151 200 ENSP00000373918/1-739 GPVGCALKNN IIQTWRQHFI QEEQILEIDC TMLTPEPVLK TSGHVDKFAD ENSBTAP00000025254/1-739 GPVGCALKNN IIQTWRQHFI QEEQILEIDC TMLTPEPVLK TSGHVDKFAD bmy_13577T0/1-732 ----CLISNS ---------- ---------- --------FR TSGHVDKFAD ENSTTRP00000000315/1-661 GPVGCALKNN IIQTWRQHFI QEEQILEIDC TMLTPEPVLK TS-HVDKFAD BACU005839/1-739 GPVGCALKNN IIQTWRQHFI QEEQILEIDC TMLTPEPVLK TSGHVDKFAD 201 250 ENSP00000373918/1-739 FMVKDVKNGE CFRADHLLKA HLQKLMSDKK CSVEKKSEME SVLAQLDNYG ENSBTAP00000025254/1-739 FMVKDLKNGE CFRADHLLKA HLQKLMSDKK CSAEKKSEME SVLAQLDNYG bmy_13577T0/1-732 FMVKDVKNGE CFRADHLLKA HLQKLMSDKK CSAEKKSEME SVLAQLDNYG ENSTTRP00000000315/1-661 FMVKDVKNGE CFRADHLLKA HL-KLMSDKK CSAEKKSEME SVLAQLDNYG BACU005839/1-739 FMVKDVKNGE CFRADHLLKA HLQKLMSDKK CSAEKKSEME SVLAQLDNYG 251 300 ENSP00000373918/1-739 QQELADLFVN YNVKSPITGN DLSPPVSFNL MFKTFIGPGG NMPGYLRPET ENSBTAP00000025254/1-739 QQELADLFVN YNVKSPTTGN DLSPPVPFNL MFKTFIGPGG NMPGYLRPET bmy_13577T0/1-732 QQELGDLFVN YNVKSPTTGN DLSPPVPFNL MFKTFIGPGG NMPGYLRPET ENSTTRP00000000315/1-661 QQELGDLFVN YNVKSPTTGN DLSPPVPFNL MFKTFIGPGG NMPGYLRPET BACU005839/1-739 QQELGDLFVN YNVKSPTTGN DLSPPVPFNL MFKTFIGPGG NMPGYLRPET 301 350 ENSP00000373918/1-739 AQGIFLNFKR LLEFNQGKLP FAAAQIGNSF RNEISPRSGL IRVREFTMAE ENSBTAP00000025254/1-739 AQGIFLNFKR LLEFNQGKLP FAAAQIGNSF RNEISPRSGL IRVREFTMAE bmy_13577T0/1-732 AQGIFLNFKR LLEFNQGRLP FAAAQIGNSF RNEISPRSGL IRVREFTMAE ENSTTRP00000000315/1-661 AQGIFLNFKR LLEFNQGKLP FAAAQIGNSF RNEISPRSGL IRVREFTMAE BACU005839/1-739 AQGIFLNFKR LLEFNQGRLP FAAAQIGNSF RNEISPRSGL IRVREFTMAE 351 400 ENSP00000373918/1-739 IEHFVDPSEK DHPKFQNVAD LHLYLYSAKA QVSGQSARKM RLGDAVEQGV ENSBTAP00000025254/1-739 IEHFVDPSEK DHPKFQNVAD LYLYLYSAKA QVSGQSARKM RLGDAVEQGV bmy_13577T0/1-732 IEHFVDPSEK DHPKFQNVAD LHLYLYSAKA QVSGQSARKM RLGDAVEQGV ENSTTRP00000000315/1-661 IEHFVDPSEK DHPKFQNVAD LHLYLYSAKA QVSGQSARKM RLGDAVEQGV BACU005839/1-739 IEHFVDPSEK DHPKFQNVAD LHLYLYSAKA QVSGQSARKM RLGDAVEQGV 401 450 ENSP00000373918/1-739 INNTVLGYFI GRIYLYLTKV GISPDKLRFR QHMENEMAHY ACDCWDAESK ENSBTAP00000025254/1-739 INNSVLGYFI GRIYLYLVKV GVSPEKLRFR QHMENEMAHY ACDCWDAESK bmy_13577T0/1-732 INNSVLGYFI GRIYLYLVKV GVSPDKLRFR QHMENEMAHY ACDCWDAESK ENSTTRP00000000315/1-661 INNSVLGYFI GRIYLYLVKV GVSPDKLRFR QHMENEMAHY ACDCWDAESK BACU005839/1-739 INNSVLGYFI GRIYLYLVKV GVSPDKLRFR QHMENEMAHY ACDCWDAESK 451 500 ENSP00000373918/1-739 TSYGWIEIVG CADRSCYDLS CHARATKVPL VAEKPLKEP- ---------- ENSBTAP00000025254/1-739 TSYGWIEIVG CADRSCYDLS CHARATKVPL VAEKPLKEP- ---------- bmy_13577T0/1-732 TSYGWIEIVG CADRSCYDLS CHARATKVPL VAEKPLKEPI SFLVTLTAQD ENSTTRP00000000315/1-661 TSYGWIEIVG CADRSCYDLS CHARATKVPL VAEKPLKEP- ---------- BACU005839/1-739 TSYGWIEIVG CADRSCYDLS CHARATKVPL VAEKPLKEP- ---------- 501 550 ENSP00000373918/1-739 ---------- ---------- -KTVNVVQFE PSKGAIGKAY KKDAKLVMEY ENSBTAP00000025254/1-739 ---------- ---------- -KTVNVVQFE PNKGAIGKAY KKDAKLVMEY bmy_13577T0/1-732 YSVNILEMDN SVVLYSLTTS YKTVNVVQFE PNKGAIGKAY KKDAKLVMEY ENSTTRP00000000315/1-661 ---------- ---------- -KTVNVVQFE PNKGAIGKAY KKDAKLVMEY BACU005839/1-739 ---------- ---------- -KTVNVVQFE PNKGAIGKAY KKDAKLVMEY 551 600 ENSP00000373918/1-739 LAICDECYIT EMEMLLNEKG EFTIETEGKT FQLTKDMINV KRFQKTLYVE ENSBTAP00000025254/1-739 LAICDECYIT EMEKLLNEKG EFTVETEGKT FQLTKDMVNV KRFQKTLHVE bmy_13577T0/1-732 LAICDECYIT EMEKLLNEKG EFTIETEGKT FQLTKDMVNV KRFQKTLHVE ENSTTRP00000000315/1-661 LAVCDECYIT EMEKLLNEKG EFTIETEGKT FQLTKDMVIV KRFQKTLHVE BACU005839/1-739 LAICDECYIT EVEKLLNEKG EFTIETEGKT FQLTKDMVNV KRFQKTLHVE 601 650 ENSP00000373918/1-739 EVVPNVIEPS FGLGRIMYTV FEHTFHVREG DEQRTFFSFP AVVAPFKCSV ENSBTAP00000025254/1-739 EVIPSVIEPS FGLGRIMYTV FEHTFQVREG DEQRTFFSFP AVVAPFKCSV bmy_13577T0/1-732 EVVPSVIEPS FGLGRIMYTV FEHTFQIREG DEQRTFFSFP AVVAPFKCSV ENSTTRP00000000315/1-661 EVVPSVIEPS FGLGRIMYTV FEHTFQIREG DEQRTFFSFP AVVAPFKCSV BACU005839/1-739 EVVPSVIEPS FGLGRIMYTV FEHTFQIREG DEQRTFFSFP AVVAPFKCSV 651 700 ENSP00000373918/1-739 LPLSQNQEFM PFVKELSEAL TRHGVSHKVD DSSGSIGRRY ARTDEIGVAF ENSBTAP00000025254/1-739 LPLSQNQEFM PFVKELSEAL TRHGISHKVD DSSGSIGRRY ARTDEIGVAF bmy_13577T0/1-732 LPLSQNQDFM PFVKELSEAL TRHGISHKVD DSSGSIGRRY ARTDEIGVAF ENSTTRP00000000315/1-661 LPLSQNQEFM PFVKELSEAL TRHGISHKVD DSSGSIGRRY ARTDEIGVAF BACU005839/1-739 LPLSQNQDFM PFVKELSEAL TRHGISHKVD DSSGSIGRRY ARTDEIGVAF 701 750 ENSP00000373918/1-739 GVTIDFDTVN KTPHTATLRD RDSMRQIRAE ISELPSIVQD LANGNITWAD ENSBTAP00000025254/1-739 GITIDFDTVN KTPHTATLRD RDSMRQIRAE VSELPSVVRD LANGSIMWAD bmy_13577T0/1-732 GITIDFDTVN KAPHTATLRD RDSMRQIRAE VSELPSVVRD LANGSITWAD ENSTTRP00000000315/1-661 GITIDFDTVN KAPHTATLRD RDSMRQIRAE VSELPSVVRD LT-GSIT-AD BACU005839/1-739 GITIDFDTVN KAPHTATLRD RDSMRQIRAE VSELPSVVRD LANGSITWAD 751 800 ENSP00000373918/1-739 VEARYPLFEG QETGKKETIE E ENSBTAP00000025254/1-739 VEARYPVFEG QETGKKEAIE E bmy_13577T0/1-732 VEARYPLFEG QETGKKETIE E ENSTTRP00000000315/1-661 VEARYPLFE- QETEKE--IE - BACU005839/1-739 VEARYPLFEG QETGKKETIE E