KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:12 2014 Check: 00 .. Name: ENSTTRP00000012837/1-1258 Len: 1267 Check: 2980 Weight: 1.00 Name: ENSP00000347602/1-1257 Len: 1267 Check: 3976 Weight: 1.00 Name: ENSBTAP00000025155/1-1261 Len: 1267 Check: 6501 Weight: 1.00 Name: bmy_14450T0/1-1191 Len: 1267 Check: 4773 Weight: 1.00 Name: BACU018305/1-1227 Len: 1267 Check: 4381 Weight: 1.00 // 1 50 ENSTTRP00000012837/1-1258 MKAADEPAYL TVGTDVSAKY RGAFCEAKIK TVKRLVKVKV LLKQDNTTQL ENSP00000347602/1-1257 MKAADEPAYL TVGTDVSAKY RGAFCEAKIK TVKRLVKVKV LLKQDNTTQL ENSBTAP00000025155/1-1261 MKAADEPAYL TVGTDVSAKY RGAFCEAKIK TVKRLVKVKV LLKQDNTTQL bmy_14450T0/1-1191 MKAADEPAYL TVGTDVSAKY RGAFCEAKIK TVKRLVKVKV LLKQDNTTQL BACU018305/1-1227 -QAADEPAYL TVGTDVSAKY RGAFCEAKIK TVKRLVKVKV LLKQDNTTQL 51 100 ENSTTRP00000012837/1-1258 VQDDQVKGPL RVGAIVETRT SDGSFQEAVI SKLTDASWYT VVFDDGDERT ENSP00000347602/1-1257 VQDDQVKGPL RVGAIVETRT SDGSFQEAII SKLTDASWYT VVFDDGDERT ENSBTAP00000025155/1-1261 VQDDQVKGPL RVGAIVETRT SDGSFQEAVI SKLTDASWYT VVFDDGDERT bmy_14450T0/1-1191 VQDDQVKGPL RVGAIVETRT SDGSFQEAII SKLTDASWYT V---DHDKVI BACU018305/1-1227 VQDDQVKGPL RVGAIVETRT SDGSFQEAVI SKLTDASWYT VVFDDGDERT 101 150 ENSTTRP00000012837/1-1258 LRRTSLCLKG ERHFAESETL DQLPLTNPEH FGTPVIAKKT NRGRRSSLPV ENSP00000347602/1-1257 LRRTSLCLKG ERHFAESETL DQLPLTNPEH FGTPVIAKKT NRGRRSSLPV ENSBTAP00000025155/1-1261 LRRTSLCLKG ERHFAESETL DQLPLTNPEH FGTPVIAKKM NRGRRSSLPV bmy_14450T0/1-1191 LTFS------ ---------- ---------- ---------- ---------- BACU018305/1-1227 LRRTSLCLKG ERHFAESETL DQLPLTNPEH FGTPVIAKKT NRGRRSSLPV 151 200 ENSTTRP00000012837/1-1258 NEDEKEDEST EEEDEDKRRL NDELLGKVVS VVSTSEKSEW YPALVVSPSC ENSP00000347602/1-1257 TEDEKEEESS EEEDEDKRRL NDELLGKVVS VVSATERTEW YPALVISPSC ENSBTAP00000025155/1-1261 NEDEKEEESS EEEDEDKRRL NDELLGKVVS VVSTSEKSEW YPALVISPSC bmy_14450T0/1-1191 NEDEKEEESS EEEDEDKRRL NDELLGKVVS VVSTSEKSEW YPALVVSPSC BACU018305/1-1227 NEDEKEEESS EEEDEDKRRL NDELLGKVVS VVSTSEKSEW YPALVVSPSC 201 250 ENSTTRP00000012837/1-1258 NDDITVKKDQ CLIRSFIDSK FYSIARKDIK EVDILSLPES ELSAKPGLQK ENSP00000347602/1-1257 NDDITVKKDQ CLVRSFIDSK FYSIARKDIK EVDILNLPES ELSTKPGLQK ENSBTAP00000025155/1-1261 NDDITVKKDQ CLIRSFIDSK FYSIARKDIK EVDILNLPES ELSAKPGLQK bmy_14450T0/1-1191 NDDITVKKDQ CLIRSFIDSK FYSIARKBIK EVDILNLPES ELSAKPGLQK BACU018305/1-1227 NDDITVKKDQ CLIRSFIDSK FYSIARKDIK EVDILDLPES ELSAKPGLQK 251 300 ENSTTRP00000012837/1-1258 ASIFLKTRVV PDNWKMDISE ILESSSSDDE VGPAEENDEE KEKEAKKEEE ENSP00000347602/1-1257 ASIFLKTRVV PDNWKMDISE ILESSSSDDE DGPAEENDEE KEKEAKKTEE ENSBTAP00000025155/1-1261 ASIFLKTRVV PDNWKMDISE ILESSSSDDE DGPAEENEEE KEKEAKKEEE bmy_14450T0/1-1191 ASIFLKTRVV PDNWKMDISE ILESSSSDDE VGPAEENDEE KEKEAKKEEE BACU018305/1-1227 ASIFLKTRVV PDNWKMDISE ILESSSSDDE VGPAEENDEE KEKEAKKEEE 301 350 ENSTTRP00000012837/1-1258 EMPEEEPDPE ERDSFLQQLY KFMEDRGTPI NRPHVLRYID LNLFKLLRLV ENSP00000347602/1-1257 EVPEEELDPE ERDNFLQQLY KFMEDRGTPI NKPPVLGYKD LNLFKLFRLV ENSBTAP00000025155/1-1261 EMPEEEPDPE ERDNFLQQLY KFMEDRGTPI NKPPVLGYKD LNLFKLFRLV bmy_14450T0/1-1191 EM-------- ---------- -IICFQGTPI NKPPVLGYKD LNLFKLFRLV BACU018305/1-1227 EMPEEEPDPE ERDSFLQQLY KFMEDRGTPI NKPPVLGYKD LNLFKLFRLV 351 400 ENSTTRP00000012837/1-1258 YHQGGCDK-D SGAVWKQINM DLGIPILNSA ASYNVKTAYR KYLYGFEEYC ENSP00000347602/1-1257 YHQGGCDNID SGAVWKQIYM DLGIPILNSA ASYNVKTAYR KYLYGFEEYC ENSBTAP00000025155/1-1261 YHQGGCDSID SGAVWKQIYM DLGIPILNSA ASYNVKTAYR KYLYGFEEYC bmy_14450T0/1-1191 YHQGGCDKID SGAVWKQIYM DLGIPILNSA ASYNVKTAYR KYLYGFEEYC BACU018305/1-1227 YHQGGCDKID SGAVWKQIYM DLGIPILNSA ASYNVKTAYR KYLYGFEEYC 401 450 ENSTTRP00000012837/1-1258 RSANIQFRTI HHHEPKVKEE KKDLEESMEE APKVDQEMPL VEVKSEPEEN ENSP00000347602/1-1257 RSANIQFRTV HHHEPKVKEE KKDLEESMEE ALKLDQEMPL TEVKSEPEEN ENSBTAP00000025155/1-1261 RSANIQFRTI HHHEPKVKEE KKDLEESMEE APKVDQEMPL VEVKSEPEEN bmy_14450T0/1-1191 RSANIQFRTI HHHEPKVKEE KKDLEESMEE APKVDQEMPL VEVKSEPEEN BACU018305/1-1227 RSANIQFRTI HHHEPKVKEE KKDLEESMEE APKVDQEMPL VEVKSEPEEN 451 500 ENSTTRP00000012837/1-1258 IDSNSESERE ETELKSPRXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000347602/1-1257 IDSNSESERE EIELKSPRGR RRIARDVNSI KKEIEEEKTE DKLKDNDTEN ENSBTAP00000025155/1-1261 IDSNSESERE EVELKSPRGR RRIARDANSI KKEIEEEKTE DKLRENDTEN bmy_14450T0/1-1191 IDSNSESERE ETELKSPRGR RRIARDANSI KKEIEEEKTE DKLKDNDTEN BACU018305/1-1227 IDSNSESERE ETELKSPRGR RRIARDANSI KKEIEEEKTE DRLKDDDTEN 501 550 ENSTTRP00000012837/1-1258 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000347602/1-1257 KDVDDDYETA EKKENELLLG RKNTPKQKEK KIKKQEDSDK DSDEEEEKSQ ENSBTAP00000025155/1-1261 KDVDDDSETA EKKENELLLG RKNTPKQKEK KIRKQEDSDK DSEEEEEKSQ bmy_14450T0/1-1191 KDVDDDYETA EKKENELLLG RKNPPKQKEK KIKKQEDSDK DSEEEEEKIQ BACU018305/1-1227 KDVDDDYETA EKKENELLLG RKNPPKQKEK KIKKQEDSDR DSEEEEEKSQ 551 600 ENSTTRP00000012837/1-1258 XXEETESKCD SEGEEDEEDT EPCLTGTKVK VKYGRGKTQK IYEASIKGTE ENSP00000347602/1-1257 EREETESKCD SEGEEDEEDM EPCLTGTKVK VKYGRGKTQK IYEASIKSTE ENSBTAP00000025155/1-1261 EREETESKCD SEGEEDEEDT EPCLTGTKVK VKYGRGKTQK IYEASIKSTE bmy_14450T0/1-1191 EREETESKCD SEGEEDEEDT EPCLTGTKVK VKYGRGKTQK IYEASIKGTE BACU018305/1-1227 EREETESKCD SEGEEDEEDT EPCLTGTKVK VKYGRGKTQK IYEASIKGTE 601 650 ENSTTRP00000012837/1-1258 IDDGEVLYLV HYYGWNVXXX XXX-XXXXXX XXXXXXXXXX XXXXX----X ENSP00000347602/1-1257 IDDGEVLYLV HYYGWNVRYD EWV-KADRII WPLDKGGPKK KQKKK----A ENSBTAP00000025155/1-1261 IDDGEVLYLV HYYGWNVRYD EWV-KADRII WPLDKGGPKK KQKKK----A bmy_14450T0/1-1191 IDDGEVLYLV HYYGWNVRYD EWV-KADRII WPLDKGGPKK KQKKK----A BACU018305/1-1227 IDDGEVLYLV HYYGWNVRAR TRVPRTGRQI --LNHCATRE ALLIHFVVVT 651 700 ENSTTRP00000012837/1-1258 XNKEDSEKDE KRDEERQKSK RGRPPLKSTL SSNMPYGLSK TPNSDGKSDS ENSP00000347602/1-1257 KNKEDSEKDE KRDEERQKSK RGRPPLKSTL SSNMPYGLSK TANSEGKSDS ENSBTAP00000025155/1-1261 KNKEDSEKDE KRDEERQKSK RGRPPLKSTL SSNMPYGLSK TANSDGKSDS bmy_14450T0/1-1191 KNKEDSEKDE KRDEERQKSK RGRPPLKSTL SSNMPYGLSK TPNSDGKSDS BACU018305/1-1227 QNKEDSEKDE KRDEERQKSK RGRPPLKSTL SSNMPYGLSK TPNSDGKSDS 701 750 ENSTTRP00000012837/1-1258 CSSDSETEDL LEKNLMNEEL SPDIKEELEK NESLSDDKLD EENPKIAAHI ENSP00000347602/1-1257 CSSDSETEDA LEKNLINEEL S--LKDELEK NENLNDDKLD EENPKISAHI ENSBTAP00000025155/1-1261 CSSDSETEDL LEKNLMNEEL SPDVKEELEK NENLNDDKLD EENPKTAPHI bmy_14450T0/1-1191 CSSDSETEDL LEKNLMNEEL SPDIKEELEK NESLSDDKLD EENPKIAAHI BACU018305/1-1227 CSSDSETEDL LEKNLMNEEL SPDIKEELEK NESLSDDKLD EENPKIAAHI 751 800 ENSTTRP00000012837/1-1258 LKENDRTQMQ PLETLKLEVG ENEQIVQIFG NKVEQVEEVK KEAEKSPKGK ENSP00000347602/1-1257 LKENDRTQMQ PLETLKLEVG ENEQIVQIFG NKMEKTEEVK KEAEKSPKGK ENSBTAP00000025155/1-1261 LKENDRTQMQ SLETLKLEAG ENEQIVQILG NKVEQ-EEVK KDAEKSPKGK bmy_14450T0/1-1191 LKENDRTQMQ PLETLKLEVG ENEQIVQIFG NKVEQAEEVK KEAEKSPKGK BACU018305/1-1227 LKENDRTQMQ PLETLKLEVG ENEQIVQIFG NKVEQADEVK KEAEKSPKGK 801 850 ENSTTRP00000012837/1-1258 GRRSKTKDLS LEIIKISSFS QDEAGTEPHI EAQSIEFSSL DNKNFSSATE ENSP00000347602/1-1257 GRRSKTKDLS LEIIKISSFG QNEAGSEPHI EAHSLELSSL DNKNFSSATE ENSBTAP00000025155/1-1261 GRRSKTKDLS LEIIKISSFT QDEAGTEPHI DAQSPEFSSL DSKNFSSATE bmy_14450T0/1-1191 GRRSKTKDLS LEIIKISSFS QDEAGTEPHI EAQSIEFSSL DSKNFSSATE BACU018305/1-1227 GRRSKTKDLS LEIIKISSFS QDEAGTEPHI EAQSIEFSSL DSKNFSSATE 851 900 ENSTTRP00000012837/1-1258 DEIDQCAKEK KLKRKILGQS SPEKKVRMEN GMEMTNSI-- -SQERTSDCV ENSP00000347602/1-1257 DEIDQCVKEK KLKRKILGQS SPEKKIRIEN GMEMTNTV-- -SQERTSDCI ENSBTAP00000025155/1-1261 DETDQCAKEK KLKRKILGQS SPEKRIRIEN GMEMTNSISS TSQERTSDCT bmy_14450T0/1-1191 DEIDQCAKEK KLKRKILGQS SPEKKVRIEN GMEMTNSI-- -SQERTSDCV BACU018305/1-1227 DEIDQCAKEK KLKRKILGQS SPEKKVRIEN GMEMTNSV-- -SQERTSDCV 901 950 ENSTTRP00000012837/1-1258 ASDGMKNLNF EQHFEIENEG MPSLIAEPNQ CIQELTKEKF DSPAEETVNT ENSP00000347602/1-1257 GSEGMKNLNF EQHFERENEG MPSLIAESNQ CIQQLTSERF DSPAEETVNI ENSBTAP00000025155/1-1261 ASEGVKNLNF EQHFEIENEG MPSLIAEPNQ CVQELTNEKF DGPAEETVNT bmy_14450T0/1-1191 ASDGMKNLNF EQHFEIENEG MPSLIAEPNQ CIQELTKEKF DSPAEETVNT BACU018305/1-1227 ASDGMKNLNF EQHFEIENEG MPSLIAEPNQ CIQELTKEKF DSPAEETVNT 951 1000 ENSTTRP00000012837/1-1258 PLKEEEDAMP LIGPETLVCH EVDLDDLDEK DKTSTEDVVV ESSECNSLVS ENSP00000347602/1-1257 PLKEDEDAMP LIGPETLVCH EVDLDDLDEK DKTSIEDVAV ESSESNSLVS ENSBTAP00000025155/1-1261 PLKEEEDAMP LIGPETLVCH EVDLDDLDEK EKTSIEDAVV ESSESNSLVS bmy_14450T0/1-1191 PLKEEEDAMP LIGPETLVCH EVDLDDLDEK DKTSTEDVVV ESSESNSLVS BACU018305/1-1227 PLKEEEDAMP LIGPETLVCH EVDLDDLDEK DKTSTEDVVV ESSESNSLVS 1001 1050 ENSTTRP00000012837/1-1258 IPPALPPAVQ HNFSVASPLT LSQDESRSIK SESDVTIEVD SIAEESQEGL ENSP00000347602/1-1257 IPPALPPVVQ HNFSVASPLT LSQDESRSVK SESDITIEVD SIAEESQEGL ENSBTAP00000025155/1-1261 IPPALPPVAQ HNFSVASPLT LSQDESRSIK SESDITIEVD SIAEESQEGL bmy_14450T0/1-1191 IPPALPPAVQ HNFSVASPLT LSQDESRSIK SESDITIEVD SIAEESQEGL BACU018305/1-1227 IPPALPPAVQ HNFSVASPLT LSQDESRSIK SESDITIEVD SIAEESQEGL 1051 1100 ENSTTRP00000012837/1-1258 CERESANGFE ASVASGTCSI IVQERESREK GQKRPSDGTS GLLAKKQKRT ENSP00000347602/1-1257 CERESANGFE TNVASGTCSI IVQERESREK GQKRPSDGNS GLMAKKQKRT ENSBTAP00000025155/1-1261 CERESANGFE ASVASGTCSI IVQERESREK GQKRPSDGTS GLLAKKQKRT bmy_14450T0/1-1191 CERESANGFE ASVASGTCSI IVQERESREK GQKRPSDGTS GLLAKKQKRT BACU018305/1-1227 CERESANGFE ASVASGTCSI IVQERESREK GQKRPSDGTS GLLAKKQKRT 1101 1150 ENSTTRP00000012837/1-1258 PKRTSAVAKN EKNGAGQSSD SEDLPVLDNS SKCTPVKHLS VSKPQKLARS ENSP00000347602/1-1257 PKRTSAAAKN EKNGTGQSSD SEDLPVLDNS SKCTPVKHLN VSKPQKLARS ENSBTAP00000025155/1-1261 PKRTSAVAKN EKNGAGQSSD SEDLPVLDNS SKCTPVKHLS VSKPQKLARS bmy_14450T0/1-1191 PKRTSAVAKN EKNGAGQSSD SEDLPVLDNS SKCTPVKHLS VSKPQKLARS BACU018305/1-1227 PKRTSAVAKN EKNGAGQSSD SEDLPVLDNS SKCTPVKHLS VSKPQKLARS 1151 1200 ENSTTRP00000012837/1-1258 PARISPHIKD GEKDKQKEKH PNSSPRTYKW SFQLNELDNM NSTERISFLQ ENSP00000347602/1-1257 PARISPHIKD GEKDKHREKH PNSSPRTYKW SFQLNELDNM NSTERISFLQ ENSBTAP00000025155/1-1261 PARISPHIKD GEKDKQKEKH PNSSPRTYKW SFQLNELDNM NSTERISFLQ bmy_14450T0/1-1191 PARISPHIKD GEKDKQKEKH PNSSPRTYKW SFQLNELDNM NSTERISFLQ BACU018305/1-1227 PARISPHIKD GEKDKQKEKH PNSSPRTYKW SFQLNELDNM NSTERISFLQ 1201 1250 ENSTTRP00000012837/1-1258 EKLQEIRKYY MSLKSEVATI DRRRKRLKKK DREVSHAGAS MSSASSDTGM ENSP00000347602/1-1257 EKLQEIRKYY MSLKSEVATI DRRRKRLKKK DREVSHAGAS MSSASSDTGM ENSBTAP00000025155/1-1261 EKLQEIRKYY MSLKSEVATI DRRRKRLKKK DREVSHAGAS MSSASSDTGM bmy_14450T0/1-1191 EKLQEIRKYY MSLKSEVATI DRRRKRLKKK DREVSHAGAS MSSASSDTGM BACU018305/1-1227 EKLQEIRKYY MSLKSEVATI DRRRKRLKKK DRE------- ---------- 1251 1300 ENSTTRP00000012837/1-1258 SPSSSSPPQN VLAVECR ENSP00000347602/1-1257 SPSSSSPPQN VLAVECR ENSBTAP00000025155/1-1261 SPSSSSPPQN VLAVECR bmy_14450T0/1-1191 SPSSSSPPQN VLAVECR BACU018305/1-1227 ---------- -------