KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:25:06 2014 Check: 00 .. Name: ENSBTAP00000025131/1-837 Len: 1617 Check: 8909 Weight: 1.00 Name: BACU006958/1-1606 Len: 1617 Check: 2737 Weight: 1.00 Name: ENSTTRP00000001128/1-843 Len: 1617 Check: 3813 Weight: 1.00 Name: bmy_00200T0/1-837 Len: 1617 Check: 5399 Weight: 1.00 // 1 50 ENSBTAP00000025131/1-837 MKKWGSSESR ESQDLPQEDS CPDPLDGDPN YRPAPTKPHS FPTAKSRSRL BACU006958/1-1606 MKKWGSSDLW ESQDLPQEDS CPEPLDGDPN SRPAPAKPHS FPAAKSRSRL ENSTTRP00000001128/1-843 MKKWGSSDLR ESQDLRQEDS CPEPLDGDPN SRPAPAKPHS FPVAKSRSRL bmy_00200T0/1-837 MKKWESSDLW ESQDLPQEDS CPDPLDGDPN SRPAPAKPHS FPVAKSRSRL 51 100 ENSBTAP00000025131/1-837 FGKGDSEDTS LMDCSYEEGQ LASCPAITIS PVVIIQRSGD GPTCVRQLSQ BACU006958/1-1606 FGKGDSEDTS LMDCSSEEGQ LASCPAITVS PVVIVQRPGD GPTCARQPSQ ENSTTRP00000001128/1-843 FGKGDSEDTS LMDCSYEEGQ LASCPAITVS PVVTVQRPGD GPTCARQPSQ bmy_00200T0/1-837 FGKGDSEDTS LMDCSSEEGQ LASCPAITVS PVVIVQRPGD GPTCARQPPQ 101 150 ENSBTAP00000025131/1-837 DSAATENLKL YDRRKIFEAV AQNNCEELES LLLFLQKSKK HLMDSEFKDP BACU006958/1-1606 DSAA-ENLKL YNRRKIFEAV AQNNCEELES LLLFLKKSKK HLMDSEFKDP ENSTTRP00000001128/1-843 DSAA-ENLKL YDRRKIFEAV AQNNCEELES LLLFLKNSKK HLTDSEFKDP bmy_00200T0/1-837 DSAA-ENLKL YDRRKIFEAV AQNNCKQLQS LLLFLKKSKK HLTDSEFKDP 151 200 ENSBTAP00000025131/1-837 ETGKTCLLKA MLNLHNGQND TIPLLLEIAR QTDSLKELVN ASYTDSYYKG BACU006958/1-1606 DTGKTCLLKA MLNLHNGQND TIPLLLEIAR QTDSLKELVN ASYTDSYYKG ENSTTRP00000001128/1-843 DTGKTCLLKA MLNLHDGQND TIPLLLEIAR QTDSLKELVN ASYTDGYYKG bmy_00200T0/1-837 DTGKTCLLKA MLNLHNGQND TIPLLLEIAR QTDSLKELVN ASYTDSYYKG 201 250 ENSBTAP00000025131/1-837 QTALHIAIER RNMALVTLLV ENGANVQAAA NGDFFKKTKG RPGFYFGELP BACU006958/1-1606 QTALHIAIER RNMALVTLLV ENGADVQAAA NGDFFKKTKG RPGFYFGELP ENSTTRP00000001128/1-843 QTALHIAIER RNMALVTLLV ENGADVQAAA NGDFFKKTKG RPVFYFGELP bmy_00200T0/1-837 QTALHIAIER RNMALVTLLV ENGADVQAAA NGDFFKKTKG RPGFYFGELP 251 300 ENSBTAP00000025131/1-837 LSLAACTNQL GIVKFLLQNS WQPADISARD SVGNTVLHAL VEVADNTADN BACU006958/1-1606 LSLAACTNQL GTVKFLLQNS WQSADISARD SMGNTVLHAL VEVADNTADN ENSTTRP00000001128/1-843 LSLAACTNQL GTVKFLLQNS WQSADISARD SVGNTVLHAL VEVADNTADN bmy_00200T0/1-837 LSLAACTNQL GTVKFLLQNS WQSADISARD SMGNTVLHAL VEVADNTADN 301 350 ENSBTAP00000025131/1-837 TKFVTSMYNE ILILGAKIHP TLKLEELTNK KGLTPLALAA RSGKIG---- BACU006958/1-1606 TKFVTSMYNE ILILGARLHP ALKLEELTNK KGLTPLALAA RSGKIG---- ENSTTRP00000001128/1-843 TKFVTSMYNE ILILGARLHP ALKLEELTNK KGLTPLALAA SSGKIGVFSG bmy_00200T0/1-837 TKFVTSMYNE ILILGARLHP ALKLEELTNK KGLTPLALAA RSGKIG---- 351 400 ENSBTAP00000025131/1-837 ------VLAY ILQREIQEPE CRHLSRKFTE WAYGPVHSSL YDLSCIDTCE BACU006958/1-1606 ------VLAY ILQREIQEPE CRHLSRKFTE WAYGPVHSSL YDLSCIDTCE ENSTTRP00000001128/1-843 PLQSFTVLAY ILQREIQEPE CRHLSRKFTE WAYGPVHSSL YDLSCIDTCE bmy_00200T0/1-837 ------VLAY ILQREIQEPE CRHLSRKFTE WAYGPVHSSL YDLSCIDTCE 401 450 ENSBTAP00000025131/1-837 KNSVLEVIAY SSSETPNRHD MLLVEPLNRL LQDKWDRFVK RIFYFNFFVY BACU006958/1-1606 KNSVLEVIAY SSSETPNRHD MLLVEPLNRL LQDKWDRFVK RIFYFNFFIY ENSTTRP00000001128/1-843 KNSVLEVIAY SSSETPNRHD MLLVEPLNRL LQDKWDRFVK RIFYFNFFIY bmy_00200T0/1-837 KNSVLEVIAY SSSETPNRHD MLLVEPLNRL LQDKWDRFVK RIFYFNFFIY 451 500 ENSBTAP00000025131/1-837 CLYMIIFTTV AYYRPAGGRP PFKPKHTVGD YFRITGEIIS VAGGIYFFSR BACU006958/1-1606 CLYMIIFTTA AYYRPVEGRP PFKLKHTVGG YFRVTGEILS VAGGVYFFFR ENSTTRP00000001128/1-843 CLYMIIFTTA AYYRPVEGRP PFKLKHTVGG YFRVTGEILS VAGGVYFFFR bmy_00200T0/1-837 CLYMIIFTTA AYYRPVEGRP PFKLKHTVGG YFRVTGEILS VAGGVYFFFR 501 550 ENSBTAP00000025131/1-837 GIQYFLQRRP SLKTLFVDSY SEMLFFMQSL FMLATVVLYF CHRKEYVASM BACU006958/1-1606 GIQYFLQRRP SLKTLFVDSY SEMLFFVQSL FMLGTVVLYF CHCKEYVASM ENSTTRP00000001128/1-843 GIQYFLQRRP SLKTLFVDSY SEMLFFVQSL FMLGTVVLYF CHCKEYVASM bmy_00200T0/1-837 GIQYFLQRRP SLKTLFVDSY SEMLFFVQSL FMLGTVVLYF CHCKEYVASM 551 600 ENSBTAP00000025131/1-837 VFSLAMGWTN MLYYTRGFQQ MGIYAVMIEK MILRDLCRFM FVYLVFLFGF BACU006958/1-1606 VFSLAMGWTN MLYYTRGFQQ MGIYAVMIEK MILRDLCRFM FVYLVFLFGF ENSTTRP00000001128/1-843 VFSLAMGWTN MLYYTRGFQQ MGIYAVMIEK MILRDLCRFM FVYLVFLFGF bmy_00200T0/1-837 VFSLAMGWTN MLYYTRGFQQ MGIYAVMIEK MILRDLCRFM FVYLVFLFGF 601 650 ENSBTAP00000025131/1-837 STAVVTLIED EKNDSVSVEL SQHRWRGHGC RSAD-SYNSL YSTCLELFKF BACU006958/1-1606 STAVVTLIED GKNDSVSAET TSHRWRGPGC RPSDSSYNSL YSTCLELFKF ENSTTRP00000001128/1-843 STAVVTLIED GKNGSVSAEL TSHRWRGPGC RPSDSSYNSL YSTCLELFKF bmy_00200T0/1-837 STAVVTLIED GKNDSVSAES TSHRWRGPGC RPSDSSYNSL YSTCLELFKF 651 700 ENSBTAP00000025131/1-837 TIGMGDLEFT ENYDFKAVFV ILLLAYVILT YILLLNMLIA LMGETVNKIA BACU006958/1-1606 TIGMGDLEFT ENYDFKAVFV ILLLAYVVLT YILLLNMLIA LMGETVNRIA ENSTTRP00000001128/1-843 TIGMGDLEFT ENYDFKAVFV ILLLAYVILT YILLLNMLIA LMGETVNKIA bmy_00200T0/1-837 TIGMGDLEFT ENYDFKAVFV ILLLAYVVLT YILLLNMLIA LMGETVNRIA 701 750 ENSBTAP00000025131/1-837 QESKNIWKLQ RAITILDTEK SFLKCMRKAF RSGKLLQVGY TPDGKDDYRW BACU006958/1-1606 QESKNIWKLQ RAITILDTEK SFLKCMRKAF RSGKLLQVGY TADGKDDYRW ENSTTRP00000001128/1-843 QESKNIWKLQ RAITI-DTEK NFLKCMRE-F RSGQLLQW-Y TADGQDD-QW bmy_00200T0/1-837 QESKNIWKLQ RAITILDTEK SFLKCMRKAF RSGKLLQVGY TADGKDDYRW 751 800 ENSBTAP00000025131/1-837 CFRVDEVNWT TWNTNVGIIN EDPGNCEGIK RTLSFSLRSS R---VAGRNW BACU006958/1-1606 CFRVDEVNWT TWNTNVGIIN EDPGNCEGIK RTLSFSLRSG RGLAACDKRS ENSTTRP00000001128/1-843 CFRVDEVNWT TWNTNVGIIN EDPGNCEGIK RTLSFSLRSG R---AAGRNW bmy_00200T0/1-837 CFRVDEVNWT TWNTNVGIIN EDPGNCEGIK RTLSFSLRSG R---AAGRNW 801 850 ENSBTAP00000025131/1-837 KNFA------ ---------- ---------- ---------- ------LVPL BACU006958/1-1606 RDLAPLAAED VPATSVTGAA PVRGDFLLHP SPALPVGTAM DAHPKEMVPL ENSTTRP00000001128/1-843 KNFA------ ---------- ---------- ---------- ------LVPL bmy_00200T0/1-837 KNFA------ ---------- ---------- ---------- ------LVPL 851 900 ENSBTAP00000025131/1-837 LRDAST---- -----RERHP A--------- ---------- ---------- BACU006958/1-1606 MGRIATVPSG NVTILQEKRP AEITPTKKSA HLFLEIEGFE PNPTVTKTSP ENSTTRP00000001128/1-843 LRDAST---- -----RERHA A--------- ---------- ---------- bmy_00200T0/1-837 LRDAST---- -----RERHP A--------- ---------- ---------- 901 950 ENSBTAP00000025131/1-837 ---------- ---------- ---------- ---------- ---------- BACU006958/1-1606 LIFSKPMDSN IRQYLPGSCD DMDSPQSPQD DETETPFNPS SPSANLAKQE ENSTTRP00000001128/1-843 ---------- ---------- ---------- ---------- ---------- bmy_00200T0/1-837 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000025131/1-837 ---------- ---------- ---------- ---------- ---------- BACU006958/1-1606 QRHKKRWLRK HIFVAVSEGG VGQLLELLME LQELCEQRRN LDVSDFLMHK ENSTTRP00000001128/1-843 ---------- ---------- ---------- ---------- ---------- bmy_00200T0/1-837 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSBTAP00000025131/1-837 ---------- ---------- ---------- ---------- ---------- BACU006958/1-1606 LTALDTGKTC LMKALLNINP STKEIVQILL AFAEENNILD RFINAKYTEE ENSTTRP00000001128/1-843 ---------- ---------- ---------- ---------- ---------- bmy_00200T0/1-837 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000025131/1-837 ---------- ---------- ---------- ---------- ---------- BACU006958/1-1606 AYEGQTALNI AIERRQGDIT ALLIAAGADV NAHAKGVFFN PKYQHEGFYF ENSTTRP00000001128/1-843 ---------- ---------- ---------- ---------- ---------- bmy_00200T0/1-837 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000025131/1-837 ---------- --QPEEVHL- ---------- ---------- ---------- BACU006958/1-1606 GETPLALAAC TNQPEIVQLL MDNEQTDITS QDSRGNNILH ALVTVAEDFK ENSTTRP00000001128/1-843 ---------- --QPEEVHL- ---------- ---------- ---------- bmy_00200T0/1-837 ---------- --QPEEVHL- ---------- ---------- ---------- 1151 1200 ENSBTAP00000025131/1-837 ---------- ---------- ---------- ---------- ---------- BACU006958/1-1606 TQNDFVKHMY DMILLTSGNW ELETTRNNDG LTPLQLAAKM GKAESHGQAA ENSTTRP00000001128/1-843 ---------- ---------- ---------- ---------- ---------- bmy_00200T0/1-837 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSBTAP00000025131/1-837 ---------- ---------- ---------- ---------- ---------- BACU006958/1-1606 RGRTLWTSGP KSGNWELETT RNNDGLTPLQ LAAKMGKAEI LKYILSREIK ENSTTRP00000001128/1-843 ---------- ---------- ---------- ---------- ---------- bmy_00200T0/1-837 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSBTAP00000025131/1-837 ---------- ---------- ---------- ---------- ---------R BACU006958/1-1606 EKRLRTLSRK FTDWAYGPVS SSLYDLTNVD TMTDNSVLKI IVYNTNIDNR ENSTTRP00000001128/1-843 ---------- ---------- ---------- ---------- ---------K bmy_00200T0/1-837 ---------- ---------- ---------- ---------- ---------K 1301 1350 ENSBTAP00000025131/1-837 H--------- ---------F TGS------- ---------- ---------- BACU006958/1-1606 HEMLTLEPLH TLLHMKWKKF AKYMFFLSFC SYFFYNITLT FVSYYHPREK ENSTTRP00000001128/1-843 H--------- ---------F AGS------- ---------- ---------- bmy_00200T0/1-837 H--------- ---------F AGS------- ---------- ---------- 1351 1400 ENSBTAP00000025131/1-837 ---------- ---------- ---------- ---------- -LKPEDA--- BACU006958/1-1606 EALPHPLALT YKMGWLQLLG RMFVLIWAMC ISVKEGIAIF LLRPSDLQSI ENSTTRP00000001128/1-843 ---------- ---------- ---------- ---------- -LKPEDA--- bmy_00200T0/1-837 ---------- ---------- ---------- ---------- -LKPEDX--- 1401 1450 ENSBTAP00000025131/1-837 ---------- ---------- ---------- ---------- ---------- BACU006958/1-1606 LSDAWFHFVF FVQAVLVILS VFLYLLTCKE YLACLVLAMA LGWANMLYYT ENSTTRP00000001128/1-843 ---------- ---------- ---------- ---------- ---------- bmy_00200T0/1-837 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSBTAP00000025131/1-837 ---------- ---------- ---------- ---------- ---------- BACU006958/1-1606 RGFQSMGMYS VMIQKVILHD VLKFLFVYIV FLLGFGVALA SLIEKCSKDI ENSTTRP00000001128/1-843 ---------- ---------- ---------- ---------- ---------- bmy_00200T0/1-837 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSBTAP00000025131/1-837 ---------- ----EIINDS VALGE----- ---------- ---------- BACU006958/1-1606 EDSNSFGSFS DTVLELFKLT IGLGDLNIQK NSKYPILFLF LLITYVTLTF ENSTTRP00000001128/1-843 ---------- ----DIIKDS AALGE----- ---------- ---------- bmy_00200T0/1-837 ---------- ----EIIKDS AALGE----- ---------- ---------- 1551 1600 ENSBTAP00000025131/1-837 ---------- ---------- ---------- ---------- ---------- BACU006958/1-1606 VLLLNMLIAL MGETVENVSK ESERIWRLQR ARTILEFEKM LPEWLRNRFR ENSTTRP00000001128/1-843 ---------- ---------- ---------- ---------- ---------- bmy_00200T0/1-837 ---------- ---------- ---------- ---------- ---------- 1601 1650 ENSBTAP00000025131/1-837 ---------- ------K BACU006958/1-1606 MGELCKVAEQ DFRLCLR ENSTTRP00000001128/1-843 ---------- ------K bmy_00200T0/1-837 ---------- ------K