KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:46 2014 Check: 00 .. Name: BACU008081/1-380 Len: 705 Check: 5523 Weight: 1.00 Name: ENSP00000370589/1-594 Len: 705 Check: 7819 Weight: 1.00 Name: ENSTTRP00000003238/1-595 Len: 705 Check: 2537 Weight: 1.00 Name: bmy_07650T0/1-596 Len: 705 Check: 4464 Weight: 1.00 Name: ENSBTAP00000025042/1-596 Len: 705 Check: 2946 Weight: 1.00 // 1 50 BACU008081/1-380 MI-------- ---------- ---------- ---------- ---------- ENSP00000370589/1-594 MVLLHVLFEH AVGYALLALK EVEEISLLQP QVEESVLNLG KFHSIVRLVA ENSTTRP00000003238/1-595 MVLLHVLFEH AVGYALLALK EVEEISLLLP QVEECVLNLG KFHNIVRLVA bmy_07650T0/1-596 MVLLHVLFEH AVGYALLALK EVEEISLLLP QVEECVLNLG KFHNIVRLVA ENSBTAP00000025042/1-596 MVLLHVLFEH AVGYALLALK EVEEISLLLP QVEECVLNLG KFHNIVRLVA 51 100 BACU008081/1-380 ---------- ---------- ---------- ----P----- ---------- ENSP00000370589/1-594 FCPFASSQVA LENANAVSEG VVHEDLRLLL ETHLPSKKKK VLLGVGDPKI ENSTTRP00000003238/1-595 FCPFSSSQVA LENANAVSEG VVHEDLRLLL ETHLPSKKKK VLLGVGDPKI bmy_07650T0/1-596 FCPFSSSQVA LENANAVSEG VVHEDLRLLL ETHLPTKKKK VLLGVGDPKI ENSBTAP00000025042/1-596 FCPFSSSQVA LENANAVSEG VVHEDLRLLL ETHLPPKKKK VLLGVGDPKI 101 150 BACU008081/1-380 ---------- ---------- ---------- ---------- ---------- ENSP00000370589/1-594 GAAIQEELGY NCQTGGVIAE ILRGVRLHFH NLVKGLTDLS ACKAQLGLGH ENSTTRP00000003238/1-595 GAAIQEELGY NCQTGGVIAE ILRGVRLHFH NLVKGLTDLS ACKAQLGLGH bmy_07650T0/1-596 GAAIQEELGY NCQTGGVIAE ILRGVRLHFH NLVKGLTDLS ACKAQLGLGH ENSBTAP00000025042/1-596 GAAIQEELGY NCQTGGVIAE ILRGVRLHFH NLVKGLTDLS ACKAQLGLGH 151 200 BACU008081/1-380 ---------- ---------- ---------- ---------- -W-------- ENSP00000370589/1-594 SYSRAKVKFN VNRVDNMIIQ SISLLDQLDK DINTFSMRVR EWYGYHFPEL ENSTTRP00000003238/1-595 SYSRAKVKFN VNRVDNMIIQ SISLLDQLDK DINTFSMRVR EWYGYHFPEL bmy_07650T0/1-596 SYSRAKVKFN VNRVDNMIIQ SISLLDQLDK DINTXSMRVR EWYGYHFPEL ENSBTAP00000025042/1-596 SYSRAKVKFN VNRVDNMIIQ SISLLDQLDK DINTFSMRVR EWYGYHFPEL 201 250 BACU008081/1-380 ---------- -------AQR RD-------- ---------- ---------- ENSP00000370589/1-594 VKIINDNATY CRLAQFIGNR RELNEDKLEK LEELTMDGAK AKAILDASRS ENSTTRP00000003238/1-595 VKIINDNATY CRLAQFIGNR RELNEEKLEK LEELTMDAAK AKAILDASRS bmy_07650T0/1-596 VKIINDNATY CRLAQFIGNR RELNEEKLEK LEELTMDAAK AKAILDASRS ENSBTAP00000025042/1-596 VKIINDNATY CRLAQFIGNR KELNEEKLEK LEELTMDAAK AKAILDASRS 251 300 BACU008081/1-380 ---------- ---------- ---------- ---------- ---------- ENSP00000370589/1-594 SMGMDISAID LINIESFSSR VVSLSEYRQS LHTYLRSKMS QVAPSLSALI ENSTTRP00000003238/1-595 SMGMDISAID LINIESFSSR VVSLSEYRQS LHTYLRSKMS QVAPSLSALI bmy_07650T0/1-596 SMGMDISAID LINIESFSSR VVSLSEYRQS LHTYLRSKMS QVAPSLSALI ENSBTAP00000025042/1-596 SMGMDISAID LINIESFSSR VVSLSEYRQS LHTYLRSKMS QVAPSLSALI 301 350 BACU008081/1-380 ---------- ---------- ---------- ---QLSRALK TRGNTPKYGL ENSP00000370589/1-594 GEAVGARLIA HAGSLTNLAK YPASTVQILG AEKALFRALK TRGNTPKYGL ENSTTRP00000003238/1-595 GEAVGARLIA HAGSLTNLAK YPASTVQILG AEKALFRALK TRGNTPKYGL bmy_07650T0/1-596 GEAVGARLIA HAGSLTNLAK YPASTVQILG AEKALFRALK TRGNTPKYGL ENSBTAP00000025042/1-596 GEAVGARLIA HAGSLTNLAK YPASTVQILG AEKALFRALK TRGNTPKYGL 351 400 BACU008081/1-380 TFHSTFIGRA AAKNKGRISR YLANKCSFAS RIDCFSEVPT SVFGEKLREQ ENSP00000370589/1-594 IFHSTFIGRA AAKNKGRISR YLANKCSIAS RIDCFSEVPT SVFGEKLREQ ENSTTRP00000003238/1-595 IFHSTFIGRA AAKNKGRISR YLANKCSIAS RIDCFSEVPT SVFGEKLREQ bmy_07650T0/1-596 IFHXTFIGRA AAKNKGRISR YLANKCSIAS RIDCFSEVPT SVFGEKLREQ ENSBTAP00000025042/1-596 IFHSTFIGRA AAKNKGRISR YLANKCSIAS RIDCFSEVPT SVFGEKLREQ 401 450 BACU008081/1-380 VEERLSFYET GEIPRKNLDV MKEAMFQAEE AAAEITRKLE KQEKKRLKKE ENSP00000370589/1-594 VEERLSFYET GEIPRKNLDV MKEAMVQAEE AAAEITRKLE KQEKKRLKKE ENSTTRP00000003238/1-595 VEERLSFYET GEIPRKNLDV MKEAMVQAEE AAAEITRKLE KQEKKRLKKE bmy_07650T0/1-596 VEERLSFYET GEIPRKNLDV MKEAMVQAEE AAAEITRKLE KQEKKRLKKE ENSBTAP00000025042/1-596 VEERLSFYET GEIPRKNLDV MKEAMVQAEE AAAEITRKLE KQEKKRLKKE 451 500 BACU008081/1-380 KKRLAAIALV SSENSSSTPE ECEETSERPK KKKKQKPQEG PQENGMEDPS ENSP00000370589/1-594 KKRLAALALA SSENSSSTPE ECEEMSEKPK KKKKQKPQEV PQENGMEDPS ENSTTRP00000003238/1-595 KKRLAAIALA SSENSSSTLE ECEXXXXXXX XXXXXKPQEA PQENGMEDPS bmy_07650T0/1-596 KKRLAAIALA SSENSSSTPE ECEETSERPK KKKKQKPQEA PQENGMEDPS ENSBTAP00000025042/1-596 KKRLAAIALA SSENSSA-PE ECEETSERPK KKKKQKPQEV LQENGMEDPS 501 550 BACU008081/1-380 VS-SKPKKKI FFQGGAELSQ PPNSPLLSLF SLLILTRAFL ILKPPDFWPQ ENSP00000370589/1-594 ISFSKPKKKK SF-------- -SKEELMS-- ---------- ---------S ENSTTRP00000003238/1-595 VS-SKPKKKK SF-------- -PKEELVS-- ---------- ---------- bmy_07650T0/1-596 VS-SKPXKKK SF-------- -SXXELVS-- ---------- ---------S ENSBTAP00000025042/1-596 VSFSKPKKKK SF-------- -SKEELVS-- ---------- ---------S 551 600 BACU008081/1-380 DLSSPATALQ PLKMYACTKF ISTSSLIRRT SPLLNRSLSA VVLKQPETLT ENSP00000370589/1-594 DLEETA---- ---------- -GSTSIPKRK KS-------- --TPKEETVN ENSTTRP00000003238/1-595 DLEETA---- ---------- -GSGSLTKRK KS-------- --FPKEEPDS bmy_07650T0/1-596 DLEETA---- ---------- -GSGSLTKRK KS-------- --FPKEEPDC ENSBTAP00000025042/1-596 DLEETA---- ---------- -GTGSLPKRK KS-------- --FPKEEPVT 601 650 BACU008081/1-380 DESHSSLAAP HPLTTSLIPS RGFQTSAISR DIDTAAKFIG AGAATVGVAG ENSP00000370589/1-594 D--------P EEAGHRSGSK K-------KR KFS-KEEPVS SGPEEA---- ENSTTRP00000003238/1-595 D--------P EESGNKRVPK K-------KR KFSAKEEPLS SGPEEA---- bmy_07650T0/1-596 D--------P EESGNKRVPK K-------KR KFSSKEEPLS SGPEEA---- ENSBTAP00000025042/1-596 D--------P DESENKRVPK K-------KR KLSPKEEPLS SGPEEA---- 651 700 BACU008081/1-380 SGAGIGTVFG SLIIGYARNP SLKQQLFSYA ILGFALSEAM GLFCLMVAFL ENSP00000370589/1-594 ---------- ---VG--KSS SKKKKKFH-- ----KASQED ---------- ENSTTRP00000003238/1-595 ---------- ---AASKNSS SKKKKKLR-- ----KLSQEN ---------- bmy_07650T0/1-596 ---------- ---AASKSSS SKKKKXLX-- ----KLSQEN ---------- ENSBTAP00000025042/1-596 ---------- ---AASKSSG SKKKKKLR-- ----KLSQES ---------- 701 750 BACU008081/1-380 ILFAM ENSP00000370589/1-594 ----- ENSTTRP00000003238/1-595 ----- bmy_07650T0/1-596 ----- ENSBTAP00000025042/1-596 -----