KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:51 2014 Check: 00 .. Name: ENSTTRP00000001913/1-930 Len: 964 Check: 9761 Weight: 1.00 Name: bmy_07404T0/1-634 Len: 964 Check: 8373 Weight: 1.00 Name: BACU011094/1-879 Len: 964 Check: 1660 Weight: 1.00 Name: ENSP00000355961/1-962 Len: 964 Check: 8269 Weight: 1.00 Name: ENSBTAP00000024684/1-962 Len: 964 Check: 6021 Weight: 1.00 // 1 50 ENSTTRP00000001913/1-930 ---------- ---------- ---------- --LRSGKLGE QCEAVVRFPR bmy_07404T0/1-634 MASNSTKSFL ADAGYGEQEL DANSALMELD KGLRSGKLGE QCEAVVRFPR BACU011094/1-879 MASNSTKSFL ADAGYGEQEL DANSALMELD KGLRSGKLGE QCEAVVRFPR ENSP00000355961/1-962 MASNSTKSFL ADAGYGEQEL DANSALMELD KGLRSGKLGE QCEAVVRFPR ENSBTAP00000024684/1-962 MASNSTKSFL ADAGYGEQEL DANSALMELD KGLRSGKLGE QCEAVVRFPR 51 100 ENSTTRP00000001913/1-930 LFQKYPFPIL INSAFLKLAD VFRVGNNFLR LCVLKVTQQS EKHLEKILNV bmy_07404T0/1-634 LFQKYPFPIL INSAFLKLAD VFRVGNNFLR LCVLKVTQQS EKHLEKILNV BACU011094/1-879 LFQKYPFPIL INSAFLKLAD VFRVGNNFLR LCVLKVTQQS EKHLEKILNV ENSP00000355961/1-962 LFQKYPFPIL INSAFLKLAD VFRVGNNFLR LCVLKVTQQS EKHLEKILNV ENSBTAP00000024684/1-962 LFQKYPFPIL INSAFLKLAD VFRVGNNFLR LCVLKVTQQS EKHLEKILNV 101 150 ENSTTRP00000001913/1-930 DEFVKRIFSV IHSNDPVARA ITLRMLGSLA SIIPERKNAH HSIRQSLDSH bmy_07404T0/1-634 DEFVKRIFSV IHSNDPVARA ITLRMLGSLA SIIPERKNAH HSIRQSLDSH BACU011094/1-879 DEFVKRIFSV IHSNDPVARA ITLRMLGSLA SIIPERKNAH HSIRQSLDSH ENSP00000355961/1-962 DEFVKRIFSV IHSNDPVARA ITLRMLGSLA SIIPERKNAH HSIRQSLDSH ENSBTAP00000024684/1-962 DEFVKRIFSV IHSNDPVARA ITLRMLGSLA SIIPERKNAH HSIRQSLDSH 151 200 ENSTTRP00000001913/1-930 DNVEVEAAVF AAANFSAQSK DFAVGICNKI SEMIQGLATP VDLKLKLIPI bmy_07404T0/1-634 DNVEVEAAVF AAANFSAQSK DFAVGICNKI S-----LATP VDLKLKLIPI BACU011094/1-879 DNVEVEAAVF AAANFSAQSK DFAVGICNKI SEMIQGLATP VDLKLKLIPI ENSP00000355961/1-962 DNVEVEAAVF AAANFSAQSK DFAVGICNKI SEMIQGLATP VDLKLKLIPI ENSBTAP00000024684/1-962 DNVEVEAAVF AAANFSAQSK DFAVGICNKI SEMIQGLATP VDLKLKLIPI 201 250 ENSTTRP00000001913/1-930 LQHMHHDAIL ASSARELLQQ LVTSYPSNKM VIVSLHTFTL LAASSLVDTP bmy_07404T0/1-634 LQHMHHDAIL ASSARELLQQ LVTSYPSNKM VIVSLHTFTL LAASSLVDTP BACU011094/1-879 LQHMHHDAIL ASSARELLQQ LVTSYPSNKM VIVSLHTFTL LAASSLVDTP ENSP00000355961/1-962 LQHMHHDAIL ASSARQLLQQ LVTSYPSTKM VIVSLHTFTL LAASSLVDTP ENSBTAP00000024684/1-962 LQHMHHDAIL ASSARQLLQQ LVTAYPSTRM VIVSLHTFTL LAASSLVDTP 251 300 ENSTTRP00000001913/1-930 KQIQLLLQYL KNDPRKAVKR LAIQDLKLLA SKTPHTWSRE NIQALCECAL bmy_07404T0/1-634 KQIQLLLQYL KNDPRKAVKR LAIQDLKLLA SKTPHTWSRE NIQALCECAL BACU011094/1-879 KQIQLLLQYL KNDPRKAVKR LAIQDLKLLA SKTPHTWSRE NIQALCECAL ENSP00000355961/1-962 KQIQLLLQYL KNDPRKAVKR LAIQDLKLLA NKTPHTWSRE NIQALCECAL ENSBTAP00000024684/1-962 KQIQLLLQYL KNDPRKAVKR LAIQDLKLLA NKTPHTWSRE NIQALCECAL 301 350 ENSTTRP00000001913/1-930 QTPYDSLKLG MLSVLSTLSG TIAVKHYFSI ASGNVGSSPR SSDLVKLAQE bmy_07404T0/1-634 QTPYDSLKLG MLSVLSTLSG TIAVKHYFSI ASGNVGSSPR SSDLVKLAQE BACU011094/1-879 QTPYDSLKLG MLSVLSTLSG TIAVKHYFSI AS-------- ---------- ENSP00000355961/1-962 QTPYDSLKLG MLSVLSTLSG TIAIKHYFSI VPGNVSSSPR SSDLVKLAQE ENSBTAP00000024684/1-962 QTPYDSLKLG MLSVLATLSG TIAVKHYFSI ASGNVGSSPR SSDLVKLAQE 351 400 ENSTTRP00000001913/1-930 CCYHNNRGIA AHGVRVLTNI TVSCQEKDLL ALEQDAVFGL ESLLVLCSED bmy_07404T0/1-634 CCYHNNRGIA AHGVRVLTNI TVSCQEKDLL ALEQDAVFGL ESLL------ BACU011094/1-879 ---------- ---------- -------DLL ALEQDAVFGL ESLLVLCSED ENSP00000355961/1-962 CCYHNNRGIA AHGVRVLTNI TVSCQEKDLL ALEQDAVFGL ESLLVLCSQD ENSBTAP00000024684/1-962 CCYHNNRGIA AHGVRVLTNI TVSCQEKDLL ALEQDAVFGL ESLLVLCSQD 401 450 ENSTTRP00000001913/1-930 DSPGAQATLK IALNCMVKLA KGRPHLSQSV VETLLTQLHS AQDAARILMC bmy_07404T0/1-634 ---------- IALNCMVKLA KGRPHLSQSV VETLLTQLHS AQDASRILMC BACU011094/1-879 DSPGAQATLK IALNCMVKLA KGRPHLSQSV VETLLTQLRS AQDASRILMC ENSP00000355961/1-962 DSPGAQATLK IALNCMVKLA KGRPHLSQSV VETLLTQLHS AQDAARILMC ENSBTAP00000024684/1-962 DSPGAQATLK IALNCMVKLA KGRPHLSQSV VETLLTQLHS AQDTARILMC 451 500 ENSTTRP00000001913/1-930 HCLAAIAMQL PVLGDGMLGD LMELYKVIGR SATDKQQELL VSLATVIFVA bmy_07404T0/1-634 HCLAAIAMQL PVLGDGMLGD LMELYKVIGR SATDKQQELL VSLATVIFVA BACU011094/1-879 HCLAAIAMQL PVLGDGMLGD LMELYKVIGR SATDKQQELL VSLATVIFVA ENSP00000355961/1-962 HCLAAIAMQL PVLGDGMLGD LMELYKVIGR SATDKQQELL VSLATVIFVA ENSBTAP00000024684/1-962 HCLAAIAMQL PVLGDGMLGD LVELYKVIGR SATDKQQELL VSLATVIFVA 501 550 ENSTTRP00000001913/1-930 SQKALSPEVK AVIKQQLESV SNGWTVYRIA RQASRMGNHD MARELYQSLL bmy_07404T0/1-634 SQKALSAEVK AVIKQQLESV SNGWTVYRIA RQASRM---- ---------- BACU011094/1-879 SQKALSAEVK AVIKQQLESV SNGWTVYRIA RQASRMGNHD MARELYQSLL ENSP00000355961/1-962 SQKALSVESK AVIKQQLESV SNGWTVYRIA RQASRMGNHD MAKELYQSLL ENSBTAP00000024684/1-962 SQKALSAEVK AVIKQQLESV SNGWTVYRIA RQASRMGNHD MARELYQTLL 551 600 ENSTTRP00000001913/1-930 TQVASEHFYF WLNSLKEFSH AEQCLTGLQE ENYSSALSCI AESLKFYHKG bmy_07404T0/1-634 ---------- ---------- ---------- ---------- ---------- BACU011094/1-879 TQVASEHFYF WLNSLKEFSH AEQCLTGLQE ENYSSALSCI AESLKFYHKG ENSP00000355961/1-962 TQVASEHFYF WLNSLKEFSH AEQCLTGLQE ENYSSALSCI AESLKFYHKG ENSBTAP00000024684/1-962 TQVASEHFYF WLNSLKEFSH AEQCLTGLQE ENYSSALSCI AESLKFYHKG 601 650 ENSTTRP00000001913/1-930 IASLTAASTP LNPLSFQCEF VKLRIDLLQA FSQLICTCSS LKTSPPPAIA bmy_07404T0/1-634 -----AASTP LNPLSFQCEF VKLRIDLLQA FSQLICTCSS LKTSPPPAIA BACU011094/1-879 IASLTAASTP LNPLSFQCEF VKLRIDLLQA FSQLICTCSS LKTSPPPAIA ENSP00000355961/1-962 IASLTAASTP LNPLSFQCEF VKLRIDLLQA FSQLICTCNS LKTSPPPAIA ENSBTAP00000024684/1-962 IASLTAASTP LNPLSFQCEF VKLRIDLLQA FSQLICTCNS LKTSPPPAIA 651 700 ENSTTRP00000001913/1-930 TTIAMTLGND LQRCGRISNQ MKLSMEEFRS LASRYGDLYQ ASFDADSATL bmy_07404T0/1-634 TTIAMTLGND LQRCGRISNQ MKLSMEEFRS LASRYGDLYQ ASFDADSATL BACU011094/1-879 TTIAMTLGND LQRCGRISNQ MKLSMEEFRS LASRYGDLYQ ASFDADSATL ENSP00000355961/1-962 TTIAMTLGND LQRCGRISNQ MKQSMEEFRS LASRYGDLYQ ASFDADSATL ENSBTAP00000024684/1-962 TTIAMTLGND LQRCGRISNQ MKLSMEEFRS LASRYGDLYQ ASFDADSATL 701 750 ENSTTRP00000001913/1-930 RNVELQQQSC LLISHAIEAL ILDPESAXXX XXXXXXXXXX XXXXXXXXXX bmy_07404T0/1-634 RNVEL----- ---------- ---------- ---------- ---YPK---- BACU011094/1-879 RNVEL----- ---------- --------FQ EYGSTGAAHA DSEYERRMMS ENSP00000355961/1-962 RNVELQQQSC LLISHAIEAL ILDPESASFQ EYGSTGTAHA DSEYERRMMS ENSBTAP00000024684/1-962 RNVELQQQSC LLISHAIEAL ILDPESASFQ EYGSTGAAHA DSEYERRMMS 751 800 ENSTTRP00000001913/1-930 XXXXXXXXXX XXXXXXXXXX XX--HTACLC NAIISLLKVP LSFQRYFFQK bmy_07404T0/1-634 ---------- ---------- ---------- ---------- --LARYFL-- BACU011094/1-879 VYNHVLEEVE SLSRKYTPVS YMASHISCLC NAIISLLKVP LSFQRYFFQK ENSP00000355961/1-962 VYNHVLEEVE SLNRKYTPVS YM--HTACLC NAIIALLKVP LSFQRYFFQK ENSBTAP00000024684/1-962 VYNHVLEEVE SLNRKYTPVS YM--HTACLC NAIISLLKVP LSFQRYFFQK 801 850 ENSTTRP00000001913/1-930 LQSTSIKXXX XXXXXXXXXX XXXXXXXXXX XXVEGVVQHG SKSGLFRKIQ bmy_07404T0/1-634 ---------- ---------- ---------- ---------- ---------- BACU011094/1-879 LQSTSIK--- ---------- ----NNQQLA LKVEGVVQHG SKPGLFRKIQ ENSP00000355961/1-962 LQSTSIKLAL SPSPRNPAEP IAVQNNQQLA LKVEGVVQHG SKPGLFRKIQ ENSBTAP00000024684/1-962 LQSTSIKLAL SPSPRNPAEP IAVQNNQQLA LKVEGVVQHG SKPGLFRRIQ 851 900 ENSTTRP00000001913/1-930 SVCLNVSSTL QSKSGQDYKI PIDNMTNEME QRVEPHNDYF STQFLLNFAI bmy_07404T0/1-634 ---------- ---------- ---------- --------FF ---------- BACU011094/1-879 SVCLNVSSTL QSKSGQDYKI PIDNMTNEME QRVEPHNDYF STQFRLNFAI ENSP00000355961/1-962 SVCLNVSSTL QSKSGQDYKI PIDNMTNEME QRVEPHNDYF STQFLLNFAI ENSBTAP00000024684/1-962 SVCLNVSSTL QSKSGQDYKI PIDNMTNEME QRVEPHNDYF STQFLLNFAI 901 950 ENSTTRP00000001913/1-930 LGTHNITVES SVKDANGIVW KTGPRTTIFV KSLEDPYSQQ IRLQQQQVQQ bmy_07404T0/1-634 -GSILLNVE- ---------- ---------- ---------- ---------- BACU011094/1-879 LGTHNITVES SVKDANGIVW KTGPRTTIFV KSLEDPYSQQ IRLQQQQVQQ ENSP00000355961/1-962 LGTHNITVES SVKDANGIVW KTGPRTTIFV KSLEDPYSQQ IRLQQQQAQQ ENSBTAP00000024684/1-962 LGTHNITVES SVKDANGIVW KTGPRTTIFV KSLEDPYSQQ IRLQQQQAQQ 951 1000 ENSTTRP00000001913/1-930 PLQQQQQRNA YTRF bmy_07404T0/1-634 ---------- ---- BACU011094/1-879 PLQQQQQRNA YTRF ENSP00000355961/1-962 PLQQQQQRNA YTRF ENSBTAP00000024684/1-962 PLQQQQQRNA YTRF