KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:48 2014 Check: 00 .. Name: ENSP00000257863/1-573 Len: 699 Check: 5856 Weight: 1.00 Name: ENSBTAP00000024657/1-476 Len: 699 Check: 7014 Weight: 1.00 Name: BACU008077/1-648 Len: 699 Check: 8873 Weight: 1.00 Name: bmy_04684T0/1-585 Len: 699 Check: 9154 Weight: 1.00 Name: ENSTTRP00000009096/1-576 Len: 699 Check: 443 Weight: 1.00 // 1 50 ENSP00000257863/1-573 --MLGSLGLW ALLPTAV--- -------EAP PNRRTCVFFE APGVRGSTKT ENSBTAP00000024657/1-476 --MLGVLGLW ALLPTAV--- -------QAP PSRRTCVFFE APGVRGSTQN BACU008077/1-648 --MLGILGLW ALLPTAV--- -------QAP PGRRTCVFFE APGVRGSTKN bmy_04684T0/1-585 MFCLSLAAVF APAFTLILNP PLSLPWAAAP PGRRTCVFFE APGVRGSTKN ENSTTRP00000009096/1-576 --MLGILGLW ALLPTAV--- -------QAP PGRRTCVFFE APGVRGSTKN 51 100 ENSP00000257863/1-573 LGELLDTGTE LPRAIRCLYS RCCFGIWNLT QDRAQVEMQG CRDSDEPGCE ENSBTAP00000024657/1-476 LGKLLDAGPG PPRVIHCLYS RCCFGIWNLT QDQAQVEMQG CRDSDEPGCE BACU008077/1-648 LGKLLDAGPG PPRVIRCLYS RCCFGIWNLT QDQAQVEMQG CRDSDEPGCE bmy_04684T0/1-585 LGKLLDAGPG PPRVIRCLYS RCCFGIWNLT QDQAQVEMQG CRDSDEPGCE ENSTTRP00000009096/1-576 LGKLLDAGPG PPRVIHCLYS RCCFGIWNLT QDQAQVEMQG CRDSDEPGCE 101 150 ENSP00000257863/1-573 SLHCDPSPRA HPSPGSTLFT CSCGTDFCNA NYSHLPPPGS PGTPGSQGPQ ENSBTAP00000024657/1-476 SPRCDPSPRA HPRPSSTLFT CSCGADFCNA NYSHLPPLGS PGTPGLEGPQ BACU008077/1-648 SPHCDPSPRA HPSPSFTLFT CSCGTDFCNA NYSHLSRLGS PGTPGSQGPK bmy_04684T0/1-585 SPHCDPSSRA HPSPSFTLFT CSCGTDFCNA NYSHLPRLGS PGTPGSQGPK ENSTTRP00000009096/1-576 SPHCDPSPRA HPSPSFTLFT CSCGTDFCNA NYSHLPHLGS PGTPGSQGPK 151 200 ENSP00000257863/1-573 AAPGESIWM- ALVLLGLFLL LLLLLGSIIL ALLQRKNYRV RGEPV----- ENSBTAP00000024657/1-476 AISGESTWI- ALLLLGL-LL LLLLLSSSIL ALLQRKACRE RGGPE----- BACU008077/1-648 AIPGSHPGCG SQVGAGA-QV RM-------R ALLQRKGCRA HGGPEPGPGP bmy_04684T0/1-585 AIPGESIWM- ALVLLGL-LL LLLLLSNIIL ALLQRKACPV HGGPE--PGP ENSTTRP00000009096/1-576 AIPGESIWT- ALVLLGL-LL LLLLLSNIIL ALLQRKACPV HGGPE--PGP 201 250 ENSP00000257863/1-573 -PEPRPDSGR DWSVELQELP ELCFSQVIRE GGHAVVWAGQ LQGKLVAIKA ENSBTAP00000024657/1-476 -PEPESDSGR DWSAELPELP ELCFSQVIRE GGHAVVWAGQ LQGKLVAIKA BACU008077/1-648 EPEPEPHSGR DWSAELPELP ELCFSQVIRE GGHAVVWAGR LQGKLVAIKA bmy_04684T0/1-585 EPEPEPHSGR DWSAELPELP ELCFSQVIRE GGHAVVWAGR LQGKLVAIKA ENSTTRP00000009096/1-576 EPEPEPHSGR DWSAELPELP ELCFSQVIRE GGHAVVWAGR LQGKLVAIKA 251 300 ENSP00000257863/1-573 FPPRSVAQFQ AERALYELPG LQHDHIVRFI TASRGGPGRL LSGPLLVLEL ENSBTAP00000024657/1-476 FPLRAVAQFQ AERALYELPG LQHDHIVRFI TASRGCPGPL PCGPLLVLEL BACU008077/1-648 FPLRAVAQFQ AERALYGLPG LRHDHIVRLI TASRGSPGPL PCGPLLVLEL bmy_04684T0/1-585 FPLRAVAQFQ AERALYGLPG LRHDHIVRLI TASRGSPGPL PCGPLLVLEL ENSTTRP00000009096/1-576 FPLRAVAQFQ AERALYGLPG LRHDHIVRLI TASRGSPGPL PCGPLLVLEL 301 350 ENSP00000257863/1-573 HPKGSLCHYL TQYTSDWGSS LRMALSLAQG LAFLHEERWQ N--------- ENSBTAP00000024657/1-476 HPKGSLCHYL TQHTSDWGSS LRMALSLAQG LAFLHEERWQ D--------- BACU008077/1-648 HPKGSLCHYL AQHTSDWGSS LRMALSLAQG LAFLHEERWQ D--------- bmy_04684T0/1-585 HPKGSLCHYL AQHTSDWGSS LRMALSLAQG LAFLHEERWQ DGGLEGKDWV ENSTTRP00000009096/1-576 HPKXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X--------- 351 400 ENSP00000257863/1-573 ---------- -------GQY KPGIAHRDLS SQNVLIREDG SCAIGDLGLA ENSBTAP00000024657/1-476 ---------- -------GQY KPGIAHRDLS SQNVLVRDDG SCAIGDLGLA BACU008077/1-648 ---------- -------GQY KPGIAHRDLS SQNVLIRDDG SCAIGDLGLA bmy_04684T0/1-585 KKRKEEDPCP FNLASPTGQY KPGIAHRDLS SQNVLIRDDG SCAIGDLGLA ENSTTRP00000009096/1-576 ---------- -------XQY KPGIAHRDLS SQNVLIRDDG SCAIGDLGLA 401 450 ENSP00000257863/1-573 LVLPGLTQPP AWTPTQPQGP AAIMEAGTQR YMAPELLDKT LDLQDWGMAL ENSBTAP00000024657/1-476 LVLPGLAQPP TWAPSQPRGP AAIME----- ---------- ---------- BACU008077/1-648 LVLPGLAQPP TWAPTQPRGP AAIMEAGTQR YMAPELLDKT LDLQDWGTAL bmy_04684T0/1-585 LVLPGLAQPP TWAPTQPRGP AAIMEAGTQR YMAPELLDKT LDLQDWGTAL ENSTTRP00000009096/1-576 LVLPGLAQPP TWAPTQPRGP AAIMEAGTQR YMAPELLDKT LDLQDWGTAL 451 500 ENSP00000257863/1-573 RRADIYSLAL LLWEILSRCP DLRPDSSPPP FQLAYEAELG NTPTSDELWA ENSBTAP00000024657/1-476 ---------- ---------- ---------- ---------- ---------- BACU008077/1-648 RRADVYSLAL LLWEIMSRCP DLRPDSRPPP FQLAYEAELG STPTTCELWN bmy_04684T0/1-585 RRADVYSLAL LLWEIMSRCP DLRPDSRPPP FQLAYEAELG STPTTCELWT ENSTTRP00000009096/1-576 RRADVYSLAL LLWEIMSRCP DLRPDSRTPP FQLAYEAELG STPTTCELWT 501 550 ENSP00000257863/1-573 LAVQERRRPY IPSTWRCFAT DPDGLRELLE DCWDADPEAR LTAECVQQRL ENSBTAP00000024657/1-476 ---------- ---------- DPGGLRELLE DCWDADPEAR LTAECVQQRL BACU008077/1-648 LAVEERRRPH IPSTWGCFAT DPGGLRELLE DCWDADPEAR LTAECVQQRL bmy_04684T0/1-585 LAVEERRRPH IPSTWCCFAT DPGGLRELLE DCWDADPEAR LTAECVQQRL ENSTTRP00000009096/1-576 LAVEERRRPH IPSTWCCFAT DPGGLRELLE DCWDADPEAR LTAECVQQRL 551 600 ENSP00000257863/1-573 AALAHPQE-- ---------- -SHPFPESCP RG-------- ---------- ENSBTAP00000024657/1-476 AALASPEE-- ---------- -AHLFPEGCA QD-------- ---------- BACU008077/1-648 ASLALSKELT KDVEKMGAIF MDAPVSGGVG AAQSGNLMFV VGGVTDEFAA bmy_04684T0/1-585 ASLSRPQE-- ---------- -AHPFPQGCP HG-------- ---------- ENSTTRP00000009096/1-576 ASLARPQE-- ---------- -AHPFPQGCP HG-------- ---------- 601 650 ENSP00000257863/1-573 ---------- ----CPP--- ---------- ---------- -----LCPED ENSBTAP00000024657/1-476 ---------- ----CSL--- ---------- ---------- -----CCLED BACU008077/1-648 AQELLGYKGS NVVHCGALGT GQAVRIGYNT LLGGFRTTLM TKDLGLAQDS bmy_04684T0/1-585 ---------- ----CPP--- ---------- ---------- -----LCPED ENSTTRP00000009096/1-576 ---------- ----CPP--- ---------- ---------- -----LCPED 651 700 ENSP00000257863/1-573 CTSIPAPTIL PCRPQRSACH FSVQQGPCSR NPQPACTLSP V-------- ENSBTAP00000024657/1-476 HFSTP-PAIL PSRLQLSACH FTVQQGPFSR NPQPTWTTSP V-------- BACU008077/1-648 AVSTKSPILL GSQ-----AH QIYRMMHVKG YSEEACSSVF QFLREEETF bmy_04684T0/1-585 RLSTPPP--- --------CH ---------- --SPS----- --------- ENSTTRP00000009096/1-576 RLSSPPPAIL PRRPQLSVCH LSVQQGPRSR NPQPACTSSH V--------