KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:23:21 2014 Check: 00 .. Name: ENSTTRP00000012417/1-808 Len: 812 Check: 606 Weight: 1.00 Name: ENSP00000377380/1-731 Len: 812 Check: 978 Weight: 1.00 Name: ENSBTAP00000024486/1-762 Len: 812 Check: 9830 Weight: 1.00 Name: bmy_03883T0/1-782 Len: 812 Check: 9528 Weight: 1.00 Name: BACU008155/1-659 Len: 812 Check: 6960 Weight: 1.00 // 1 50 ENSTTRP00000012417/1-808 ---RREILTS RSGETERRGK EAWSESHHHP GPAPLVPGSS DWPQKXXXXX ENSP00000377380/1-731 ---------- ---------- ---------- ---------- ---------M ENSBTAP00000024486/1-762 ---------- ---------- ---------- ---------- ---------M bmy_03883T0/1-782 MSDRREARRE MEFRMWPFPQ PDSRKEARSF RSEVTGNRNI GACVTVPMTM BACU008155/1-659 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012417/1-808 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000377380/1-731 LSSRWWPSSW GILGLGPRSP PRGSQLCALY AFTYTGADGQ QVSLAEGDRF ENSBTAP00000024486/1-762 LSGRWWPSTW GNLGLGSRSP SRGSQLCALY AFTYTGADGR QVSLAEGDRF bmy_03883T0/1-782 LSSWWWPSTQ GNLGLGPRSP SQGSQLRALY AFTYTGADGR QVSLAEGDRF BACU008155/1-659 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000012417/1-808 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000377380/1-731 LLLRKTNSDW WLARRLEAPS TSRPIFVPAA YMIEESIPSQ SPTTVIPGQL ENSBTAP00000024486/1-762 LLLRKTNSDW WLARRLGAPS TSRPVFVPAA YMIEESSPSH SPTTITPSQS bmy_03883T0/1-782 LLLQKTNSDW WLVRRLGAPP ASRPIFIPAA YMTEEFSPSQ SPTTITPSQS BACU008155/1-659 ---------- ---------- ---------- -MTEEFSPSQ SPTTITPSQS 151 200 ENSTTRP00000012417/1-808 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000377380/1-731 LWTPGPKLFH GSLEE--LSQ ALPSRAQASS EQPPPLPRKM CRSVSTDNLS ENSBTAP00000024486/1-762 LWTHGPKLLP GSLEEMNLCQ EPPGRAQATS EQPPPLPPKM CRSVSVTNLR bmy_03883T0/1-782 LRTPGPKLFP GSLEETHLSQ ETPGRAQATS EQPPPLPPKM CRSISVTNLR BACU008155/1-659 LRTPGPKLFP GSLEETHLSQ ETPGRAQATS EQPPPLPPKM CRSISVTNLR 201 250 ENSTTRP00000012417/1-808 XXXXXXXXXX XXXXXPFQED LLTDADANMA RPQTFMSEPP VYCNLVDLRR ENSP00000377380/1-731 PSLLKPFQEG PSGRSLSQED LPSEASASTA GPQPLMSEPP VYCNLVDLRR ENSBTAP00000024486/1-762 PSLLKPFREG PSGRSLSQEN LLTKTDANVA RPQTLMSKAP VYCNLVDLRR bmy_03883T0/1-782 PSLLKNFQEG PSRRSLSQED LLTEAD---A RPQTFMSEPP VYCNLVDLRR BACU008155/1-659 PSLLKNFQEG PSRRSLSQED LLTEADVNMA RPQTFMSEPP VYCNLVDLRR 251 300 ENSTTRP00000012417/1-808 CPRSPPTSPA CPPLQRLDAW EQHLDPNFGR CFYINSLTGC KSWKPPRHTR ENSP00000377380/1-731 CPRSPPPGPA CPLLQRLDAW EQHLDPNSGR CFYINSLTGC KSWKPPRRSR ENSBTAP00000024486/1-762 CPRSPPSSPS CPPLQRLDAW EQHLDPNSGR CFYINSLTGC KSWKPPRHTR bmy_03883T0/1-782 CPRSPPTSPA CPPLQRLDAW EQHLDPNSGR CFYINSLTGC KSWKPPRHTR BACU008155/1-659 CPRSPPTSPA CPPLQRLDAW EQHLDPNSGR CFYINSLTGC KSWKPPRHTR 301 350 ENSTTRP00000012417/1-808 TREMNPGSME GPQTMNKDNG VLQPQAKDSE SGTGTPGLFD SQGSPSLCRL ENSP00000377380/1-731 S-ETNPGSME GTQTLKRNND VLQPQAKGFR SDTGTPEPLD PQGSLSLSQR ENSBTAP00000024486/1-762 TRETNPSSME GTQTLNRDNG ILQPQAKDEE SGPKTSELFD SQGSPYLCRR bmy_03883T0/1-782 TREMNPGSME GPQTMNRDNG VLQPQAKDSE SGTGTPGLFD SQGSPSLCRR BACU008155/1-659 TREMNPGSME GPQTMNRDNG VLQPQAKDSE SGTGTPGPFD SQGSPSLCRR 351 400 ENSTTRP00000012417/1-808 ASQLDPSDQP SALQSPRPLP QVLDDPHEVE RSGMLNMTKI AQGGRKLRKN ENSP00000377380/1-731 TSQLDPP--- -ALQAPRPLP QLLDDPHEVE KSGLLNMTKI AQGGRKLRKN ENSBTAP00000024486/1-762 TSQLDPG-KP SSLQCPRPLP TVLDDPHEVE KSGLLNMTKI AQGGRKLRKN bmy_03883T0/1-782 ASQLDPSDQP SALQSPRPLP QVLDDPHEVE RSGMLNMTKI AQGGRKLRKN BACU008155/1-659 ASQLDPSDQP SALQSPRSLP QVLDDPHEVE RSGMLNMTKI AQGGRKLRKN 401 450 ENSTTRP00000012417/1-808 WGPSWVVLAG NSLVFYREPP PTVPCTVWGP AGSRPESSVD LRGAALAHGR ENSP00000377380/1-731 WGPSWVVLTG NSLVFYREPP PTAPSSGWGP AGSRPESSVD LRGAALAHGR ENSBTAP00000024486/1-762 WGPSWVVLAG NSLVFYREPP PTAPATAWGP AGSRPESSVD LRGAALAHGR bmy_03883T0/1-782 WGPSWVVLAG NSLVFYREPP PIAPCTVWGP AGSRPESSVD LRGAALAHGR BACU008155/1-659 WGPSWVVLAG NSLVFYREPP PTAPCTVWGP AGSRPESSVD LRGAALAHGR 451 500 ENSTTRP00000012417/1-808 QLSSRRNVLH IRTVPGHEFL LQSDHEAELR AWHCALRAVI ERLVRWVG-G ENSP00000377380/1-731 HLSSRRNVLH IRTIPGHEFL LQSDHETELR AWHRALRTVI ERL------- ENSBTAP00000024486/1-762 HLSSRRHVLH IRTVPGHEFL LQSDQEAELR AWHSALRAVI ERLVRGVGVG bmy_03883T0/1-782 QLSSRRNVLH IRTVPGHEFL LQSDHEAELR AWHRALRAVI ERL------- BACU008155/1-659 QLSSRRNVLH IRTVPGHEFL LQSDHEAELR AWHRALRAVI ERL------- 501 550 ENSTTRP00000012417/1-808 GRTVTREAWA GRRSGDRENP LELRLSGSGP AELGELSAGE DEEVESEPVS ENSP00000377380/1-731 ---------- -----DRENP LELRLSGSGP A---ELSAGE DEEEESELVS ENSBTAP00000024486/1-762 GQKEWRRNCR MQGSWDRENP LEGRLSGSGP AELEELSPGE DEEEESEPVS bmy_03883T0/1-782 ---------- -----DRENP LELRLSGSGP AELGELSAGE DEEEESEPVS BACU008155/1-659 ---------- -----DRENP LELRLSGSGP AELGELSAGE DEEEESEPVS 551 600 ENSTTRP00000012417/1-808 KPLLRISSRR SSSRCPEGAE QNRVRNKLKR LIAKRPPLQT LQERGLLRDQ ENSP00000377380/1-731 KPLLRLSSRR SSIRGPEGTE QNRVRNKLKR LIAKRPPLQS LQERGLLRDQ ENSBTAP00000024486/1-762 KSLLRIGGRR SSSRCPETAE QNRVRNKLKR LIAKRPPLQT LQERGLLRDQ bmy_03883T0/1-782 KPLLRISGRR SSSRCPEGAE QNRVRNKLKR LIAKRPPLQT LQERGLLRDQ BACU008155/1-659 KPLLRISGRW SSSRCPEGAE QNRVRNKLKR LIAKRPPLQT LQERGLLRDQ 601 650 ENSTTRP00000012417/1-808 VFGCQLESLC QREGDTVPSF VRLCVAAVDK RGLNVDGIYR VSGNLAVVQK ENSP00000377380/1-731 VFGCQLESLC QREGDTVPSF LRLCIAAVDK RGLDVDGIYR VSGNLAVVQK ENSBTAP00000024486/1-762 VFGCQLESLC QREGDTVPSF VRLCVAAVDK RGLDVDGIYR VSGNLAVVQK bmy_03883T0/1-782 VFGCQLESLC QREGDTVPSF VRLCVAAVDK RGLNVDGIYR VSGNLAVVQK BACU008155/1-659 VFGCQLESLC QREGDTVPSF VRLCVAAVDK RGLNVDGIYR VSGNLAVVQK 651 700 ENSTTRP00000012417/1-808 LRFLVDRERA ITSDGRYMFP EQPGQEGRLD LDSAEWDDIH VITGALKLFL ENSP00000377380/1-731 LRFLVDRERA VTSDGRYVFP EQPGQEGRLD LDSTEWDDIH VVTGALKLFL ENSBTAP00000024486/1-762 LRFLVDRERA ITSDGRYMFP EQPGQEGRLD LDSAEWDDIH VITGALKLFL bmy_03883T0/1-782 LRFLVDRERA ITSDGRYVFP EQPGQEGRLD LDSAEWDDIH VITGALKLFL BACU008155/1-659 LRFLVDRERA ITSDGRYVFP EQPGQEGRLD LDSAEWDDIH VITGALKLFL 701 750 ENSTTRP00000012417/1-808 RELPQPLVPP LLLPHFRAAL ALSESEQRLS QIQELISSMP KPNHDTLQYL ENSP00000377380/1-731 RELPQPLVPP LLLPHFRAAL ALSESEQCLS QIQELIGSMP KPNHDTLRYL ENSBTAP00000024486/1-762 RELPQPLVPS LLLPDFRAAV ALTESEQCLS QIQELISSMP KPNHDTLRYL bmy_03883T0/1-782 RELPQPLVPP LLLPHFRAAL -----EQRLS QIQELISSMP KPNHDTLQYL BACU008155/1-659 RELPQPLVPP LLLPHFRAAL ALSESEQRLS QLQELISSMP KPNHDTLQYL 751 800 ENSTTRP00000012417/1-808 LEHLCRVIAH SDKNRMTSHN LGIVFGPTLF RPEQETSDPA AHALYPGQLV ENSP00000377380/1-731 LEHLCRVIAH SDKNRMTPHN LGIVFGPTLF RPEQETSDPA AHALYPGQLV ENSBTAP00000024486/1-762 LEHLCRVIAH SDKNRMTPHN LGIVFGPTLF RPEQETSDPV AHVLYPGQVV bmy_03883T0/1-782 LEHLCRVIAH SDKNRMTSHN LGIVFGPTLF RPEQETSDPA AHALYPGQLV BACU008155/1-659 LEHLCRVIAH SDKNRMTSHN LGIVFGPTLF RPEQETSDPA AHALYPGQLV 801 850 ENSTTRP00000012417/1-808 QLMLTDYTSL FR ENSP00000377380/1-731 QLMLTNFTSL FP ENSBTAP00000024486/1-762 QLMLTNFTRV FP bmy_03883T0/1-782 QLMLTDFTSL FR BACU008155/1-659 QLMLTDFTSL FR