KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:22:38 2014 Check: 00 .. Name: bmy_15897T0/1-668 Len: 1083 Check: 5915 Weight: 1.00 Name: ENSP00000367177/1-1070 Len: 1083 Check: 2331 Weight: 1.00 Name: ENSBTAP00000024190/1-1070 Len: 1083 Check: 4253 Weight: 1.00 Name: BACU012155/1-716 Len: 1083 Check: 4030 Weight: 1.00 Name: ENSTTRP00000008664/1-1068 Len: 1083 Check: 175 Weight: 1.00 // 1 50 bmy_15897T0/1-668 MSHWRLRFPT DTLHRAGLGS LLLLLLL--- -LVSGSCTET VNFLTYEEEA ENSP00000367177/1-1070 ---------M SPVRRWGSPC LFPLQLFSLC WVLSVAQSKT VRYSTFEEDA ENSBTAP00000024190/1-1070 ---------M SPARRGGSPC LFPLQLFSLC WVLSVAQSKT VRYSTFEEDA BACU012155/1-716 ---------M SPARRGGIPC LFPLQLFSLC WVLSVAQSKT VRYSTFEEDA ENSTTRP00000008664/1-1068 ---------M SPARRGGIPC LFPLQLFSLC WVLSVAQSKT VRYSTFEEDA 51 100 bmy_15897T0/1-668 LGTSIGVMSD HILFNSQREV PGQFRLVK-F NSSLIQVQEG DGQLTVGDAG ENSP00000367177/1-1070 PGTVIGTLAE DLHMKVSGDT S--FRLMKQF NSSLLRVREG DGQLTVGDAG ENSBTAP00000024190/1-1070 PGTVIGTLAE DLHMKVSGDT S--FRLMKQF NSSLIRVREG DGQLTVGDAG BACU012155/1-716 PGTVIGTLAE DLHMKVSGDT S--FRLMKQF NSSLIRVREG DGQLTVGDAG ENSTTRP00000008664/1-1068 PGTVIGTLAE DLHMKVSGDT S--FRLMKQF NSSLIRVREG DGQLTVGDAG 101 150 bmy_15897T0/1-668 LDLERLCGQ- -----AFDVV SFWQERFRLV HVEVEVRDVN HHAPRFPRAQ ENSP00000367177/1-1070 LDRERLCGQA PQCVLAFDVV SFSQEQFRLV HVEVEVRDVN DHAPRFPRAQ ENSBTAP00000024190/1-1070 LDRERLCGQA PQCVLAFDVV SFSQEQFRLV HVEVSVRDIN DHAPRFPRAQ BACU012155/1-716 LDRERLCGQA PQCVLAFDVV SFSQEQFRLV HVEVEVRDVN DHAPRFPRAQ ENSTTRP00000008664/1-1068 LDRERLCGQA PQCVLAFDVV SFSQEQFRLV HVEVEVRDVN DHAPRFPRAQ 151 200 bmy_15897T0/1-668 IPVEVSEGAA VGTRIPLEVP VDEDVSANGL QSVRLAEPHR PFRVELQTRA ENSP00000367177/1-1070 IPVEVSEGAA VGTRIPLEVP VDEDVGANGL QTVRLAEPHS PFRVELQTRA ENSBTAP00000024190/1-1070 IPVEVSEGAA VGTRIPLEVP VDEDVGANGL QSVRLAEPHS PFRVELQTRA BACU012155/1-716 IPVEVSEGAA VGTRIPLEVP VDEDVGANGL QSVRLAEPHS PFRVELQTRA ENSTTRP00000008664/1-1068 IPVEVSEGAA VGTRIPLEVP VDEDVGANGL QSVRLAEPHS PFRVELQTRA 201 250 bmy_15897T0/1-668 DGAQCADLVL LQELDRESQA AYNLELVAQD GGRPPRSATA ALSVRVLDAN ENSP00000367177/1-1070 DGAQCADLVL LQELDRESQA AYSLELVAQD GGRPPRSATA ALSVRVLDAN ENSBTAP00000024190/1-1070 DGAQCADLVL LQELDRESQA TYSLGLVAQD GGRPPRSATA ALSVRVLDAN BACU012155/1-716 DGAQVAD--- ---------- ---------- ---------- ---------- ENSTTRP00000008664/1-1068 DGAQCADLVL LQELDRESQA AYNLELVAQD GGRPPRSATA ALSVRVLDAN 251 300 bmy_15897T0/1-668 DHSXAFPQGA VAEVELAEDA PVGSLLLDLD AADPDEGPNG DVVFAFGSRT ENSP00000367177/1-1070 DHSPAFPQGA VAEVELAEDA PVGSLLLDLD AADPDEGPNG DVVFAFGART ENSBTAP00000024190/1-1070 DHSPAFPQGA VAEVELAEDA PVGSLLLDLD AADPDEGPNG DVVFAFGART BACU012155/1-716 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008664/1-1068 DHSPAFPQGA VAEVELAEDA PVGSLLLDLD AADPDEGPNG DVVFAFGSRT 301 350 bmy_15897T0/1-668 PXEARRLFRL DPRSGRLTLA GPVDYERQDT YELDVRAQDR GPGPRAATCK ENSP00000367177/1-1070 PPEARRLFRL DPRSGRLTLA GPVDYERQDT YELDVRAQDR GPGPRAATCK ENSBTAP00000024190/1-1070 PPEARRLFRL DPRSGRLTLA GPVDYERQDT YELDVRAQDR GPGPRAATCK BACU012155/1-716 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008664/1-1068 PPEARRLFRL DPRSGRLTLA GPVDYERQDT YELDVRAQDR GPGPRAATCK 351 400 bmy_15897T0/1-668 VIVRIRDVND NAPDIAITPL AAPGAPVASX F--AAAAAAX GGADATSSSG ENSP00000367177/1-1070 VIVRIRDVND NAPDIAITPL AAPGAPATSP FAAAAAAAAL GGADASSPAG ENSBTAP00000024190/1-1070 VIVRLRDVND NAPDISITPL AAPGAPAASP F--PAAAAAL GGAEATSSTG BACU012155/1-716 ---------- ---------- ---------- ---------- ----ATSSTG ENSTTRP00000008664/1-1068 VIVRIRDVND NAPDIAITPL AAPGAPVASP F--AAAAAAL GGADATSSTG 401 450 bmy_15897T0/1-668 PGTPEAGAIS LVPEGAARES LVALVSTSDR DSGANGQVRC ALYGHEHFRL ENSP00000367177/1-1070 AGTPEAGATS LVPEGAARES LVALVSTSDR DSGANGQVRC ALYGHEHFRL ENSBTAP00000024190/1-1070 PGTPEAGAVS LVPEGAARES LVALVSTSDR DSGANGQVRC ALYGHEHFRL BACU012155/1-716 PGTPEAGAIS LVPEGAARES LVALVSTSDR DSGANGQVRC ALYGHEHFRL ENSTTRP00000008664/1-1068 PGTPEAGAIS LVPEGAARES LVALVSTSDR DSGANGQVRC ALYGHEHFRL 451 500 bmy_15897T0/1-668 QPAYAGSYLV VTAGSLDRER IAEYNLTLVA EDRGAPPLRT VRPYLVRVSD ENSP00000367177/1-1070 QPAYAGSYLV VTAASLDRER IAEYNLTLVA EDRGAPPLRT VRPYTVRVGD ENSBTAP00000024190/1-1070 QPAYAGSYLV VTAASLDRER ISEYNLTLVA EDRGAPPLRT VRPYTVRVGD BACU012155/1-716 QPAYAGSYLV VTAGSLDRER IAEYNLTLVA EDRGAPPLRT VRPYLVRVSD ENSTTRP00000008664/1-1068 QPAYAGSYLV VTAGSLDRER IAEYNLTLVA EDRGAPPLRT VRPYLVRVSD 501 550 bmy_15897T0/1-668 ENDNEPLFTR PVYEVSVREN NPPGAYLATV AARDPDLGRN GQVTYRLLEA ENSP00000367177/1-1070 ENDNAPLFTR PVYEVSVREN NPPGAYLATV AARDRDLGRN GQVTYRLLEA ENSBTAP00000024190/1-1070 ENDNAPLFTR PVYEVSVREN NPPGAYLATV AARDPDLGRN GQVTYRLLEA BACU012155/1-716 ENDNEPLFTR PVYEVSGREN NPPGAYLATV AARDPDLGRN GQVTYRLLEA ENSTTRP00000008664/1-1068 ENDNEPLFTR PVYEVSVREN NPPGAYLATV AARDPDLGRN GQVTYRLLEA 551 600 bmy_15897T0/1-668 ---------- ---------- ---------- EELAELRLGL EALDGGSPPL ENSP00000367177/1-1070 EVGRAGGAVS TYVSVDPATG AIYALRSFDY ETLRQLDVRI QASDGGSPQL ENSBTAP00000024190/1-1070 EVGRAGGAVS TYVSVDPATG AIYALRSFDY ETLRQLDVRI QASDGGSPQL BACU012155/1-716 EVGRAGGAVS TYVSVDPATG AIYALRSFDY ETLRQLDVRI QASDGGSPQL ENSTTRP00000008664/1-1068 EVGRAGGAVS TYVSVDPATG AIYALRSFDY ETLRQLDVRI QASDGGSPQL 601 650 bmy_15897T0/1-668 RGRAVVRLHV EDQNDHAPRL VTPPLVSDSA QAPLPRDAPL GYLLTRLQAR ENSP00000367177/1-1070 SSSALVQVRV LDQNDHAPVL VHPAPANGSL EVAVPGRTAK DTVVARVQAR ENSBTAP00000024190/1-1070 SSSALVQVRV LDQNDHAPIL VHPAPANGSL EVAVPGRTAK DTAVARVQAR BACU012155/1-716 SSSALVQVRV LDQNDHAPVL VHPAPANGSL EVAVPGRTAT DTAVARVQAR ENSTTRP00000008664/1-1068 SSSALVQVRV LDQNDHAPVL VHPAPANGSL EVAVPGRTAR DTAVARVQAR 651 700 bmy_15897T0/1-668 DADQDLNAEL TYIQLR---- ---------- ---------- ---------- ENSP00000367177/1-1070 DADEGANGEL AFELQQQEPR EAFAIGRRTG EILLTGDLSQ EPPGRVFRAL ENSBTAP00000024190/1-1070 DADEGANGEL AFDLLQQEPR EAFAIGRRTG EIVLTGDLSQ EPPGRVFRAL BACU012155/1-716 DADEGANGEL AFDLLQQEPR EAFAIGSRTG EIVLTGDLSQ EPPGRVFRAL ENSTTRP00000008664/1-1068 DADEGANGEL AFDLLQQEPR EAFAIGSRTG EIVLTGDLSQ EPPGRVFRAL 701 750 bmy_15897T0/1-668 ---------- ---------- ---------- ---------- ---------- ENSP00000367177/1-1070 LVISDGGRPP LTTTATVSFV VTAGGGRGPA APASAGSPER SRPPGSRLGV ENSBTAP00000024190/1-1070 LVISDGGRPP LSTTATVSFV VTAGGGRGLA SPAGAGNPER SRPPGSRLAT BACU012155/1-716 LVISDGGRPP LSTTATVSFV ---------- ---------- ---------- ENSTTRP00000008664/1-1068 LVVSDGGRPP LSTTAAVSFV VTAGGGRGLV SPASAANSER SRPPGSRLAT 751 800 bmy_15897T0/1-668 ---------- ---------- ---------- ---------- ---------- ENSP00000367177/1-1070 SGSVLQWDTP LIVIIVLAGS CTLLLAAIIA IATTCNRRKK EVRKGGALRE ENSBTAP00000024190/1-1070 SGPALQWDTP LIIIIVLAGS CTLLLAAIIA IATTCNRRKK EVRKGGPRRE BACU012155/1-716 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008664/1-1068 SGPALQWDTP LIVIIVLAGS CTLLLAAIIA IATXXXXXXX XXXXXXXXXX 801 850 bmy_15897T0/1-668 ---------- ---------- ---------- ---------- ---------- ENSP00000367177/1-1070 ERPGAAGGGA SAPGSPEEAA RGAGPRPNMF DVLTFPGTGK APFGSPAADA ENSBTAP00000024190/1-1070 ERPGAAGGVA SAPGSPEEAA RGAGPRPNMF DVLTFPGSGK APFGSPAADA BACU012155/1-716 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008664/1-1068 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 851 900 bmy_15897T0/1-668 ---------- ---------- ---------- ---------- ---------- ENSP00000367177/1-1070 PPPAV-AAAE VPGSEGGSAT GESACHFEGQ QRLRGAHAEP YGASPGFGKE ENSBTAP00000024190/1-1070 PPPAVAAAAE VPGSEGGGAT GESACHFEGQ QRLRGAHAEP YGASPGFGKE BACU012155/1-716 ---------- ---------- ---------- ---------P YGASPGFGKE ENSTTRP00000008664/1-1068 XXXXX-XXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXASPGFG-E 901 950 bmy_15897T0/1-668 ---------- ---------- ---------- ---------- ---------- ENSP00000367177/1-1070 PAPPVAVWKG HSFNTISGRE AEKFSGKDSG KGDSDFNDSD SDISGDALKK ENSBTAP00000024190/1-1070 PAPPVAVWKG HSFNTISGRE AEKFSGKDSG KGDSDFNDSD SDISGDALKK BACU012155/1-716 PAPPVAVWKG HSFNTISGRE AEKFSGKDSG KGDSDFNDSD SDVSGDALKK ENSTTRP00000008664/1-1068 PAPPVAVWKG HSFNTISGRE AEKFSGKDSG KGDSDFNDSD SDISGDALKK 951 1000 bmy_15897T0/1-668 ---------- ----SDC--- ---------- ---GPGALAL HPATGELSLQ ENSP00000367177/1-1070 DLINHMQSGL WACTAECKIL GHSDRCWSPS CS-GPNAHPS PHPPAQMSTF ENSBTAP00000024190/1-1070 DLINHMQSGL WACTAECKIL GHSDRCWSPS CAGGPSTHAS THPPAQMSTF BACU012155/1-716 DLINHMQSGL WACTAECKIL GHSDRCWSPS CAGGPSTHAS THPPAQMSTF ENSTTRP00000008664/1-1068 DLINHMQSGL WACTAECKIL GHSDRCWSPS CAGGPSTHAS THPPAQMSTF 1001 1050 bmy_15897T0/1-668 CRLSPQPADP LT-------- ---------- -AAVVVRDG- ---------- ENSP00000367177/1-1070 CKSTSLPRDP LRRDNYYQAQ LPKTVGLQSV YEKVLHRDYD RTVTLLSPPR ENSBTAP00000024190/1-1070 CKSTSLPRDP LRRDSYYQAQ LPKTVGLQSV YEKVLHRDYD RTATLLSPPR BACU012155/1-716 CKSTSLPRDP LRRDNYYQAQ LPKTVGLQSV YEKVLHRDYD RTVTLLSPPR ENSTTRP00000008664/1-1068 CKSTSLPRDP LRRDNYYQAQ LPKTVGLQSV YEKVLHRDYD RTVTLLSPPR 1051 1100 bmy_15897T0/1-668 -GRLTR---- ---------- ---------- --- ENSP00000367177/1-1070 PGRLPDLQEI GVPLYQSPPG RYLSPKKGAN ENV ENSBTAP00000024190/1-1070 PGRLPDLQEI GVPLYPSPPG RYLSPKKEAN ENV BACU012155/1-716 PGRLPDLQEI GVPLYQSSPG RYLSPKKEDN ENV ENSTTRP00000008664/1-1068 PGRLPDLQEI GVPLYESSPG RYLSPKKEDN ENV