KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:21:09 2014 Check: 00 .. Name: bmy_13533T0/1-727 Len: 961 Check: 4601 Weight: 1.00 Name: BACU011453/1-662 Len: 961 Check: 4434 Weight: 1.00 Name: ENSTTRP00000008848/1-663 Len: 961 Check: 9269 Weight: 1.00 Name: ENSBTAP00000023605/1-484 Len: 961 Check: 2203 Weight: 1.00 // 1 50 bmy_13533T0/1-727 MAFLRKVSAV PSPGPGRGAG TNSGKCRRRC GEGRGAALVV GGCEDEWYLG BACU011453/1-662 ---------- -------MLG WKSGRSRIMD GP-------- ---------- ENSTTRP00000008848/1-663 ---------- ---------- -MTIRHQ--- ---------- ---------- ENSBTAP00000023605/1-484 ---------- ---------- -MTIRHQ--- ---------- ---------- 51 100 bmy_13533T0/1-727 ECKARKCGIA LCHGRVFRGW GNWLGRRGGQ EFGDGKAGSE RGSRTGGFAR BACU011453/1-662 ELWAAGFGLN FVGGEGWRG- ---------- ---------- ---------I ENSTTRP00000008848/1-663 ---------- ---GQQYRP- ---------- ---------- ---------R ENSBTAP00000023605/1-484 ---------- ---GQQYRP- ---------- ---------- ---------R 101 150 bmy_13533T0/1-727 PAGGLTLSVF AEKPFDVLKS GTNKTSFERK DEITAEQGGG QLGNHVEEGM BACU011453/1-662 PEG------- ---------- ------FEQK DEITAEQGGG QLGNRVEEGV ENSTTRP00000008848/1-663 MAF------- ---------- ------LRKI EALVKDMQDP EMGVRVQN-- ENSBTAP00000023605/1-484 MAF------- ---------- ------LRKI EALVKDMQDP DTGVRVQN-- 151 200 bmy_13533T0/1-727 EVGEALTVAK CFCFAGSDVL QWITQRLWVS SLEAQNLGNF IVKYGYIYPL BACU011453/1-662 EVGEALTVAK CFCFAGSDVL QWITQRLWVS SLEAQNLGNF IVKYGYIYPL ENSTTRP00000008848/1-663 --QKVAVISV PHAMTXXXXX XXXXXXXXXX XXXAQNLGNF IVKYGYIYPL ENSBTAP00000023605/1-484 --QKVTVVSI PHAMTGSDVL QWISQRLWIS GLEAQNLGNF IVKYGYIYPL 201 250 bmy_13533T0/1-727 QDPRNLVLKP DSSLYRFQTP YFWPTQQWPA EDTDYAIYLA KRNIKKKGVL BACU011453/1-662 QDPRNLVLKP DSSLYRFQTP YFWPTQQWPA EDTDYAIYLT KRNIKKKGVL ENSTTRP00000008848/1-663 QDPKNLVLKP DNSLYRFQTP YFWPTQQWPA EDTDYAIYLA KRNIKKRGIL ENSBTAP00000023605/1-484 QDPRNLTLKP DSSLYRFQTP YFWPTQQWPA EDVDYAIYLA KRNIKKKGIL 251 300 bmy_13533T0/1-727 EEYEKEDYNF LNKTINYKWD FVVMQAKEQY RAGKERKTAD RYALDCQEKA BACU011453/1-662 EEYEKEDYNF LNKKINYKWD FVIMQAKEQY RAGKERKKAD RYALDCQEKA ENSTTRP00000008848/1-663 EEYEKENYNF LNKKINYKWD FVIMQAKEQY RAGKERNKAD RYALDRQEKA ENSBTAP00000023605/1-484 EEYEKENYNF LNKKINYKWD FVIMQAREQY RAGKERNKVD RCALDCQEKA 301 350 bmy_13533T0/1-727 YWLVHRCP-- ---------- ---------- ---------- ---------- BACU011453/1-662 YWLVHRCPVG TSGLWKLQRP GQRWDVNTPL SDTLLPWEVH PRVGPSLSSS ENSTTRP00000008848/1-663 YWLVHRCP-- ---------- ---------- ---------- ---------- ENSBTAP00000023605/1-484 YWLVHRCP-- ---------- ---------- ---------- ---------- 351 400 bmy_13533T0/1-727 ---------P GMNDVLDYGL DRVTNPNEDQ LSFSCLHSGC PGALRRTKNR BACU011453/1-662 SSKSRLLTLP GMNDVLDYGL DRVSNPNEDQ RGFPPATYGI GQVASFPPSP ENSTTRP00000008848/1-663 ---------P GMNDVLDYGL DRVTDPSEVQ V--------- ---------- ENSBTAP00000023605/1-484 ---------P GASRILDTGL LVVQNRVE-- ---------- ---------- 401 450 bmy_13533T0/1-727 NPPAH----- -GAPPSSPRP ARVTASLGPS VPCLSGLRGE GPEDGACVQE BACU011453/1-662 IPFQTFCRRY AAPLKRSGKN KKVVGEMEPR --GLSSAQNC KPRALVYLSG ENSTTRP00000008848/1-663 ---------- --------KQ KQTVVSVR-- ---------- --KEIMYYRQ ENSBTAP00000023605/1-484 ---------- --------QQ KQTVVSVR-- ---------- --KEIMYYRQ 451 500 bmy_13533T0/1-727 ALGVQRCRIA ASFREDLSVS GQMIKSHKHH RAQQG---GC GVGRCPRPGV BACU011453/1-662 MVLLYQTLVA VG-----RLR GRIVKYSEQF SSNDAIMSGC ---------- ENSTTRP00000008848/1-663 ALL--RSTVK SS-----VSL GGIVKYSEQF SSNDAIMSGC ---------- ENSBTAP00000023605/1-484 ALM--RSTVK SS-----VSL GGIVKYSEQF SSNDAIMSGC ---------- 501 550 bmy_13533T0/1-727 THFLKLMAAG RW---GTQPW EEPARARACV PRFPVVLPT- LRFTPWLARL BACU011453/1-662 ------LPSN PWVTDDTQFW DLNAKL---- ----VEIPTK MRVERWAFNF ENSTTRP00000008848/1-663 ------LPSN PWVTDDTQFW DLNAKL---- ----VEFPTR MRVERWAFNF ENSBTAP00000023605/1-484 ------LPSN PWITDDTQFW DLNAKL---- ----VDIPTK MRVERWAFNF 551 600 bmy_13533T0/1-727 SALFAQIPAW LPDPRVPAHP SLGLPRLCPL SPQGLLGHGL DPSC------ BACU011453/1-662 SEL------- IRDPK----- --GRQSFQYF LKKEFSGENW PPGMVHRGVR ENSTTRP00000008848/1-663 SEL------- IRDPK----- --GRQSFQYF LKKEFSGENL ---------- ENSBTAP00000023605/1-484 SEL------- IRDPK----- --GRQSFQHF LRKEFSGENL ---------- 601 650 bmy_13533T0/1-727 -------PVT VICSLHLGFR AGKLAAELCK QDLVASLFGQ LCKRSVPVVA BACU011453/1-662 TTGGWENPLE KLEGKGVGRQ LTFLLGPEAQ TLWLRLFLAP GARRWINIDG ENSTTRP00000008848/1-663 --GFWE-ACE DLKYGDQSK- ----VKEKAE EIY-KLFLAP GARRWINIDG ENSBTAP00000023605/1-484 --GFWE-ACE DLKYGDQSK- ----VKEKAE EIY-KLFLAP GARRWINIDG 651 700 bmy_13533T0/1-727 KCVTGMKDKE VTSSQVDQLL RKPGFVHAFQ GATNVYFLFY HEVAFFELLR BACU011453/1-662 KTM------D ITVRGLKHPH R-----YVLD AAQTHIYMLM KKDSYARYLK ENSTTRP00000008848/1-663 KTM------D ITVKGLKHPH R-----YVLD AAQTHIYMLM KKDSYARYLK ENSBTAP00000023605/1-484 KTM------D ITVKGLKHPH R-----YVLD AAQTHIYMLM KKDSYARYLK 701 750 bmy_13533T0/1-727 SVCVCQTTPS TQSPKRIAKS RRELKY--KH FKTLKLEIMT PEIKVLSRSQ BACU011453/1-662 SPIYKEMLAR SVEPQETTKR RSSLPFMRRP LRSSPSPVIL RQLEEEAKAR ENSTTRP00000008848/1-663 SPVYKEMLAR AVEPQETTKR SSSLRFMRRT LRFSPSPVIL RQLEK-AKAR ENSBTAP00000023605/1-484 SPIYKEMLAK AIEPQGTTRK SSSLPFMRRH LRSSPSPVIL RQLEEEAKAR 751 800 bmy_13533T0/1-727 TTLSRLEMSV ---------- ---------- ---------- ---------- BACU011453/1-662 EAATTVDITQ ---------- ---------- ---------- ---------- ENSTTRP00000008848/1-663 EA-HTVDITQ TDQRAAPSPH LTVYTGAPLP PSPSSPRSPR CRSPRRPFPS ENSBTAP00000023605/1-484 EAATTVDITQ ---------- ---------- ---------- ---------- 801 850 bmy_13533T0/1-727 ---------- ---------- ---------- ---------- ---------- BACU011453/1-662 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008848/1-663 PGRFLRRPSS TVCPSPIKVA LEGSPGEEPK REAARGRSDA ETGGASADSR ENSBTAP00000023605/1-484 ---------- ---------- ---------- ---------- ---------- 851 900 bmy_13533T0/1-727 ---------- ---------- ---------- ---------- ---------- BACU011453/1-662 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008848/1-663 PRAPPKARVA LSLGRFLRRG CLASPVFARL SPRCPPVPHG KVQPLGEAGR ENSBTAP00000023605/1-484 ---------- ---------- ---------- ---------- ---------- 901 950 bmy_13533T0/1-727 ---------L VTGRRISCEK QAHKNNLRMQ NETQRGLERR DLRMMFQIRP BACU011453/1-662 ---------- -----IKMDV PMGSGTCLMD SEDTGTGERS DQAIEKEVIC ENSTTRP00000008848/1-663 QLPRPRSRRA ANFFQIKMDV PTGSGTCLVD PEDTRTGERS DQAIEKEVIC ENSBTAP00000023605/1-484 ---------- ---------- -------VMS KLDRRSQLRK E--------P 951 1000 bmy_13533T0/1-727 SFIPR----- - BACU011453/1-662 PWESLAEGKA S ENSTTRP00000008848/1-663 PWESLR---- - ENSBTAP00000023605/1-484 P--PK----- -