KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:23 2014 Check: 00 .. Name: ENSTTRP00000002800/1-429 Len: 592 Check: 8573 Weight: 1.00 Name: BACU012576/1-554 Len: 592 Check: 9727 Weight: 1.00 Name: ENSP00000417653/1-439 Len: 592 Check: 1529 Weight: 1.00 Name: bmy_22517T0/1-457 Len: 592 Check: 6054 Weight: 1.00 Name: ENSBTAP00000023325/1-423 Len: 592 Check: 4020 Weight: 1.00 // 1 50 ENSTTRP00000002800/1-429 ---------- ---------- -------MAV NLSRNGP--- ---------- BACU012576/1-554 MRMPAVFHWQ ATITGPNDSP YQGGVFFLTI HFPTDYPFKP PKGGVVPISV ENSP00000417653/1-439 ---------- ---------- -------MAA NLSRNGP--- ---------- bmy_22517T0/1-457 ---------- ---------- -------MAV NLSRNGP--- ---------- ENSBTAP00000023325/1-423 ---------- ---------- -------MAV NLSRNGP--- ---------- 51 100 ENSTTRP00000002800/1-429 -------ALQ EAYEQVVNGK S--------- ---PTDXXXX XXXXXXXXXX BACU012576/1-554 PDVGVLRAVR KKWQRISEQE EVLSGLAGHK KFLVQSGALF TYEGNSNDIR ENSP00000417653/1-439 -------ALQ EAYVRVVTEK S--------- ---PTDWALF TYEGNSNDIR bmy_22517T0/1-457 -------ALR EAYEQVVNEK S--------- ---PTDWALF TYEGNSNDIR ENSBTAP00000023325/1-423 -------ALL EAYQQVVNEK S--------- ---STDWALF TYEGNSNDIR 101 150 ENSTTRP00000002800/1-429 XXXXXXGGLE EMVEELNSGK VMYAFCRVKD PNSGLPKFVL INWTGEGVND BACU012576/1-554 VAGTGEGGLE EMVEELNSGK VMYAFCRVKD PNSGLPKFVL INWTGEGVND ENSP00000417653/1-439 VAGTGEGGLE EMVEELNSGK VMYAFCRVKD PNSGLPKFVL INWTGEGVND bmy_22517T0/1-457 VAGTGEGGLE EMAEELNSGK VMYAFCRVKD PNSGLPKFVL INWTGEGVND ENSBTAP00000023325/1-423 VAGTGEGGLE EMVEELNSGK VMYAFCRVKD PNSGLPKFVL INWTGEGVND 151 200 ENSTTRP00000002800/1-429 VRKGACANHV STMASFLKXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU012576/1-554 VRKGACANHV STMASFLKGA HVTINARAEE DVEPECIMQK VARASGANYT ENSP00000417653/1-439 VRKGACASHV STMASFLKGA HVTINARAEE DVEPECIMEK VAKASGANYS bmy_22517T0/1-457 VRKGACANHV STMASFLKGA HVTINARAEE DVEPECIMQK VARASGANYT ENSBTAP00000023325/1-423 VRKGACANHV STMAGFLKGA HVTINARAEE DVEPECIMQK VARASGANYT 201 250 ENSTTRP00000002800/1-429 XXXXXXXXXX XXXXXXXGSV YQKTNAVSEI KRVGKDSFWA KAEKEEENRK BACU012576/1-554 FHREGSRFQD TGPQAPVGSV YQKTNAVSEI KRVGKDSFWA KAEKEEENRR ENSP00000417653/1-439 FHKESGRFQD VGPQAPVGSV YQKTNAVSEI KRVGKDSFWA KAEKEEENRR bmy_22517T0/1-457 FHRESSRFQD TGPQAPVGSV YQKTNAVSEI KRVGKDSFWA KAEKEEENRK ENSBTAP00000023325/1-423 FHKESSRFQD TGPQAPVGSV YQKTNAVSEI KRVGKDSFWA KAEKEEENRR 251 300 ENSTTRP00000002800/1-429 LEEKRRAEEE RRRLEQERRE RELREAALRE QRHQQQGGEA GPHS------ BACU012576/1-554 LEEGRRAEEE RQRLERERRE RELREAALRE QRYQEQGGEA GPQSAETEWG ENSP00000417653/1-439 LEEKRRAEEA QRQLEQERRE RELREAARRE QRYQEQGGEA SPQS------ bmy_22517T0/1-457 LEEKRRAEEE RQRLERERRE RELREAALRE QRYGGQGGEA GPE------- ENSBTAP00000023325/1-423 LEEKRRAEEE RQQLEQERRE RELREAALRE QRYQEQGGEA GLQ------- 301 350 ENSTTRP00000002800/1-429 ---------- ---------R KYE-QQEVLS RSGEEQ---- ---------- BACU012576/1-554 SRPRLSLQKE EENRRLEEKR RAEEERQRLE RERRERELRE AALREQRYQE ENSP00000417653/1-439 ---------- ---------R TWEQQQEVVS RNRNEQ---- ---------- bmy_22517T0/1-457 ---------- ---------R KWE-PREALS RNREEQ---- ---------- ENSBTAP00000023325/1-423 ---------- ---------R KYE-QHEVLS RNREEQ---- ---------- 351 400 ENSTTRP00000002800/1-429 ---------- ---EPVCPQP AHPREIFKQK ERAVSTTPIS SPQPXXXXXX BACU012576/1-554 QGGEAGPQSS SLCEPVCPQP AHPREIFKQK ERAVSTTSIS SPQPVLHTAP ENSP00000417653/1-439 ---------G STCASLQESA VHPREIFKQK ERAMSTTSIS SPQPGKLRSP bmy_22517T0/1-457 ---------- ---------P AHPREIFKQK ERAVSTTSIS SPQPGKLRSP ENSBTAP00000023325/1-423 ---------- ---------P AHPREIFKQK ERAMSTTSIS SPQPGKLKSP 401 450 ENSTTRP00000002800/1-429 --------XX XXXXXXXXXX XXXXXXXXXX XXXXXP---- ---------- BACU012576/1-554 KGLLGVYDVC VTCVQREVFL QLLHVSVRSL HDSRCP---- ---------- ENSP00000417653/1-439 ---------- --FLQKQLTQ PETHFGREPA AAISRP---- ---------- bmy_22517T0/1-457 ---------- --FLQKQLPP PETPLSRESA HATSRPGAGK ALGCPVGGWG ENSBTAP00000023325/1-423 ---------- --FLQKQLTQ PDTPISRESP HATSRP---- ---------- 451 500 ENSTTRP00000002800/1-429 ---------- ---------- ------AEPV PSALPCSVPA EEEAVYEEPP BACU012576/1-554 ---------- ---------- RTDLR-KEPA PSAPPCSVPV EEEAVYEEPP ENSP00000417653/1-439 ---------- ---------- RADLPAEEPA PSTPPCLVQA EEEAVYEEPP bmy_22517T0/1-457 WEGDVACPLP SPGSERAVSS HADLR-EEPV PSAPPCSVPV EEEAVYEEPP ENSBTAP00000023325/1-423 ---------- ---------- RADLR-EEPV PSIPPCSVQV EEEAVYEEPP 501 550 ENSTTRP00000002800/1-429 EQETLYEEPS MVQQQDTSSE RIDHY---PG LSGKGLCARA LYDYQAADET BACU012576/1-554 EQETLYEEPP VVQQQDTSSE RIDHY---PG LSGKGLCARA LYDYQAADET ENSP00000417653/1-439 EQETFYEQPP LVQQQGAGSE HIDHHIQGQG LSGQGLCARA LYDYQAADDT bmy_22517T0/1-457 EQETLYEEPP VVQQQDASSE RIDHY---PG LSGKGLCARA LYDYQAADET ENSBTAP00000023325/1-423 EQETFYEEPP AVQQQDASSE PIDHY---PG LSGKGLCARA LYDYQAADET 551 600 ENSTTRP00000002800/1-429 EISFDPENLI TGIEVIDEGW WRGYGPDGHF GMFPANYVEL IE BACU012576/1-554 EISFDPENLI TGIEVIDEGW WRGYGPDGHF GMFPANYVEL IE ENSP00000417653/1-439 EISFDPENLI TGIEVIDEGW WRGYGPDGHF GMFPANYVEL IE bmy_22517T0/1-457 EISFDPENLI TGIEVIDEGW WRGYGPDGHF GMFPANYVEL IE ENSBTAP00000023325/1-423 EISFDPENLI TGIEVIDEGW WRGYGPDGHF GMFPANYVEL IE