KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:19:45 2014 Check: 00 .. Name: bmy_03304T0/1-823 Len: 837 Check: 8882 Weight: 1.00 Name: ENSTTRP00000009212/1-615 Len: 837 Check: 3629 Weight: 1.00 Name: ENSP00000232974/1-747 Len: 837 Check: 2833 Weight: 1.00 Name: ENSBTAP00000023089/1-567 Len: 837 Check: 8568 Weight: 1.00 // 1 50 bmy_03304T0/1-823 MLLVEKTTDS PAAEFSLVED VALHFACLMG RLNEQRLFQP DLCDVDLVLV ENSTTRP00000009212/1-615 ---------- ---------- --------MG RLNEQRLFQP DLCDVDLVLV ENSP00000232974/1-747 ---------- ---------- --------MG RLNEQRLFQP DLCDVDLVLV ENSBTAP00000023089/1-567 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_03304T0/1-823 PQRSVFPAHK GVLAAYSQFF HSLFTQNKQL QRVELSLEAL APGGLQQILN ENSTTRP00000009212/1-615 PQRSVFPAHK GVLAAYSQFF HSLFTQNKQL QRVELSLEAL APGGLQQILN ENSP00000232974/1-747 PQRSVFPAHK GVLAAYSQFF HSLFTQNKQL QRVELSLEAL APGGLQQILN ENSBTAP00000023089/1-567 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_03304T0/1-823 FIYTSKLLVN AANVHEVLSA ASLLQMADIA ASCQELLDAR SLGPPGPGAV ENSTTRP00000009212/1-615 FIYTSKLLVN AANVHEVLSA ASLLQMADIA ASCQELLDAR SLGTPGPGAV ENSP00000232974/1-747 FIYTSKLLVN AANVHEVLSA ASLLQMADIA ASCQELLDAR SLGPPGPGTV ENSBTAP00000023089/1-567 ---------- ---------- -----MADIA ASCQELLDAR SLGPPGPGAV 151 200 bmy_03304T0/1-823 ALAQPAASCT PAAPPYYCDI KQEADAPGLP KIYAREGPDP YSVRVEDGAG ENSTTRP00000009212/1-615 ALAQPAASCT PAAPPYYCDI KQEADAPGLP KIYAREGPDP YSVRVEDGAG ENSP00000232974/1-747 ALAQPAASCT PAAPPYYCDI KQEADTPGLP KIYAREGPDP YSVRVEDGAG ENSBTAP00000023089/1-567 ALAQPAAGCT PAAPTYYCDI KQEADAPGLP KIYAREGPDP YSVRVEDGAG 201 250 bmy_03304T0/1-823 ATGGTVPATI GPAQPFFKEE EKEGGVEEAG RPPASLCKLE GGEELEEELG ENSTTRP00000009212/1-615 ATGGTVPATI GPAQPFFK-E EKEGGVEEAG RPPASLCKLE GGEELEEELG ENSP00000232974/1-747 TAGGTVPATI GPAQPFFK-E EKEGGVEEAG GPPASLCKLE GGEELEEELG ENSBTAP00000023089/1-567 ATGGTVPAAL GPAQPFFK-E EKEGGVEEAG GPPASLCKLE GGEELEEELG 251 300 bmy_03304T0/1-823 GSGAYGHREQ SQIIVEVNLN NQTLHVSTGP EGKPGAATGP ATMVLGGEDG ENSTTRP00000009212/1-615 GSGTYSHREQ SQIIVEVNLN NQTLHVSTGP EGKPGAATGP ATMVLGGEDG ENSP00000232974/1-747 GSGTYSRREQ SQIIVEVNLN NQTLHVSTGP EGKPGAGPSP ATVVLGREDG ENSBTAP00000023089/1-567 GSGTYSRREQ SQIIVEVNLN NQTLHVSTGP EGKPGAATGP ATMVLGREDG 301 350 bmy_03304T0/1-823 LQRHSEEEEA DEEEEEEEEE EEEEGGGSGG EEEEEEEEEG GSQGEEDEEE ENSTTRP00000009212/1-615 LQRHSEDEEA DEEEEEEEEE EEEEGGGSGG GEEEEEDE-- ---------- ENSP00000232974/1-747 LQRHSDEEEE DDEEEEEE-E EEEEGGGSG- -REEEEEEEG GSQGEEEEEE ENSBTAP00000023089/1-567 LQRHSEEEED DEEEEEEEDE EEEEGGGSGA -EEEEEDEEG GSQ------- 351 400 bmy_03304T0/1-823 EEEGHSEPDQ EEEQEEGHSE PDQESSEEEE EGEEEEEDGG AGGRQGPGGR ENSTTRP00000009212/1-615 ---------- ---------- ---------- ---------- ---------- ENSP00000232974/1-747 EDGHSEQEEE EEEEEEEGPS EQDQESSEEE EGEEGEAGGK QGPR---GSR ENSBTAP00000023089/1-567 ---------- ---------- ---------- ---------- ---------- 401 450 bmy_03304T0/1-823 GSGADPPPHS RMATRSA--- RRRGLPEPEE AGRQGGKRPK PPAGVAPAPA ENSTTRP00000009212/1-615 ---------- ---------- ---------- ---------- ---------- ENSP00000232974/1-747 SSRADPPPHS HMATRSRENA RRRGTPEPEE AGRRGGKRPK PPPGVASASA ENSBTAP00000023089/1-567 ---------- RRMRRMR--- RRKGTASKR- --RKRRRKRK GTASRIRRAQ 451 500 bmy_03304T0/1-823 RGPQAADGLG AKVKLEEKQH HPCQKCPRVF NNRWYLEKHM NVTHSRMQIC ENSTTRP00000009212/1-615 ---------- --------QH HPCQKCPRVF NNRWYLEKHM NVTHSRMQIC ENSP00000232974/1-747 RGPPATDGLG AKVKLEEKQH HPCQKCPRVF NNRWYLEKHM NVTHSRMQIC ENSBTAP00000023089/1-567 RRRKAADGLG AKVKLEEKQH HPCQKCPRVF NNRWYLEKHM NVTHSRMQIC 501 550 bmy_03304T0/1-823 DQCGKRFLLE SELLLHRQTD CERNIQ---- ------LWSL HEHNKIVHGY ENSTTRP00000009212/1-615 DQCGKRFLLE SELLLHRQTD CERNIQCVTC GKAFKKLWSL HEHNKIVHGY ENSP00000232974/1-747 DQCGKRFLLE SELLLHRQTD CERNIQCVTC GKAFKKLWSL HEHNKIVHGY ENSBTAP00000023089/1-567 DQCGKRFLLE SELLLHRQTD CERNIQCVTC GKAFKKLWSL HEHNKIVHGY 551 600 bmy_03304T0/1-823 AEKKFSCEIC EKKFYTMAHV RKHMVAHTKD MPFTCETCGK SFKRSMSLKV ENSTTRP00000009212/1-615 AEKKFSCEIC EKKFYTMAHV RKHMVAHTKD MPFTCETCGK SFKRSMSLKV ENSP00000232974/1-747 AEKKFSCEIC EKKFYTMAHV RKHMVAHTKD MPFTCETCGK SFKRSMSLKV ENSBTAP00000023089/1-567 AEKKFSCEIC EKKFYTMAHV RKHMVAHTKD MPFTCETCGK SFKRSMSLKV 601 650 bmy_03304T0/1-823 HSLQHSGEKP FRCENCNERF QYKYQLRSHM SIHIGHKQFM CQWCGKDFNM ENSTTRP00000009212/1-615 HSLQHSGEKP FRCEXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000232974/1-747 HSLQHSGEKP FRCENCNERF QYKYQLRSHM SIHIGHKQFM CQWCGKDFNM ENSBTAP00000023089/1-567 HSLQHSGEKP FRCENCNERF QYKYQLRSHM SIHIGHKQFM CQWCGKDFNM 651 700 bmy_03304T0/1-823 KQYFDEHMKT HTGEKPYICE ICGKSFTSRP NMKRHRRTHT GEKPYPCDVC ENSTTRP00000009212/1-615 XXXXXXXXXX XXXEKPYICE ICGKSFTSRP NMKRHRRTHT GEKPYPCDVC ENSP00000232974/1-747 KQYFDEHMKT HTGEKPYICE ICGKSFTSRP NMKRHRRTHT GEKPYPCDVC ENSBTAP00000023089/1-567 KQYFDEHMKT HTGEKPYICE ICGKSFTSRP NMKRHRRTHT GEKPYPCDVC 701 750 bmy_03304T0/1-823 GQRFRFSNML KAHKEKCFPP PAVRAAPDPA SPAAALPHRC QPRREAEHQQ ENSTTRP00000009212/1-615 GQRFRFSNML KAHKEKCFRV SHPLAG-DSA PAAPGLP--- ---------- ENSP00000232974/1-747 GQRFRFSNML KAHKEKCFRV SHTLAG-DGV PAAPGLP--- ---------- ENSBTAP00000023089/1-567 GQRFRFSNML KAHKEKCFRV SHPMAS-DGA PAAPGLP--- ---------- 751 800 bmy_03304T0/1-823 LTACCTGPRT LHSSWSGAGG ATPPEL-AGH ALPGAPDPGG CAGWQHPELA ENSTTRP00000009212/1-615 ---------- ---------- PAPPQ--ALP LLPGLPQ--- ---------- ENSP00000232974/1-747 ---------- ---------- PTQPQAHALP LLPGLPQ--- -------TLP ENSBTAP00000023089/1-567 ---------- ---------- PAPPQ--ALP LLPGLPQ--- -------TLP 801 850 bmy_03304T0/1-823 EDTSLPSAPF QRLLEAFTFC LFVCFLEVKE NEKRGNS ENSTTRP00000009212/1-615 ---TLPPPP- ---------P LFPTAASPGG RLNTNN- ENSP00000232974/1-747 PPPHLPPPP- ---------P LFPTTASPGG RMNANN- ENSBTAP00000023089/1-567 PPPHLPPPP- ---------P LFP------- -------