KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:11 2014 Check: 00 .. Name: BACU011244/1-625 Len: 687 Check: 575 Weight: 1.00 Name: ENSP00000359285/1-627 Len: 687 Check: 5125 Weight: 1.00 Name: ENSBTAP00000022855/1-614 Len: 687 Check: 3184 Weight: 1.00 Name: bmy_14481T0/1-625 Len: 687 Check: 8462 Weight: 1.00 Name: ENSTTRP00000001719/1-549 Len: 687 Check: 3297 Weight: 1.00 // 1 50 BACU011244/1-625 MELGGPGAPP PPLLPPLLLL LGAGFLP--- -----VSSHV ETRAHAEERL ENSP00000359285/1-627 MELGGPGAP- -RLLPPLLLL LGTGLLR--- -----ASSHV ETRAHAEERL ENSBTAP00000022855/1-614 MELGGPGTS- -PLPPLLLLL LGAGLLP--- -----VSSHA ETRAHAEERL bmy_14481T0/1-625 MELGGPGAPP PPLLPPLLLL LGAGFLPAAH LLVPAVSSHV ETRAHAEERL ENSTTRP00000001719/1-549 ---------- ---------- ---------- ------SSHV ETRAHAEERL 51 100 BACU011244/1-625 LKKLFSGYNK WSRPVANISD VVLVHFGLSI AQLIDVDEKN QMMTTNVWVK ENSP00000359285/1-627 LKKLFSGYNK WSRPVANISD VVLVRFGLSI AQLIDVDEKN QMMTTNVWVK ENSBTAP00000022855/1-614 LKKLFSGYNK WSRPVANISD AVLVHFGLSI AQLIDVDEKN QMMTTNVWVK bmy_14481T0/1-625 LKKLFSGYNK WSRPVANISD VVLVHFGLSI AQLIDVDEKN QMMTTNVWVK ENSTTRP00000001719/1-549 LKKLFSGYNK WSRPVANISD VVLVHFGLSI AQLIDVDEKN QMMTTNVWVK 101 150 BACU011244/1-625 QPQIITAVTT IKLGRQAQCG PLRRSPRSVA PRVGVTARRA GEPRAQGCPS ENSP00000359285/1-627 Q--------- -----EWHDY KLRWDP---A DYENVTSIR- -------IPS ENSBTAP00000022855/1-614 Q--------- -----EWHDY KLHWDP---A DYENVTSIR- -------IPS bmy_14481T0/1-625 Q--------- -----EWHDY KLRWDP---A DYENVTSIR- -------IPS ENSTTRP00000001719/1-549 Q--------- -----EWHDY KLRWDP---A DYENVTSIR- -------IPS 151 200 BACU011244/1-625 RARPLRSGGV YGGRGEESFR AAGAGHLAHH LSLPPSADGD FAVTHLTKAH ENSP00000359285/1-627 ---------- -----ELIWR P--------D IVLYNNADGD FAVTHLTKAH ENSBTAP00000022855/1-614 ---------- -----ELIWR P--------D IVLYNNADGD FAVTHLTKAH bmy_14481T0/1-625 ---------- -----ELIWR P--------D IVLYNNADGD FAVTHLTKAH ENSTTRP00000001719/1-549 ---------- -----ELIWR P--------D IVLYNNADGD FAVTHLTKAH 201 250 BACU011244/1-625 LFHDGRVQWT PPAIYKSSCS IDVTFFPFDQ QNCTMKFGSW TYDKAKIDLV ENSP00000359285/1-627 LFHDGRVQWT PPAIYKSSCS IDVTFFPFDQ QNCTMKFGSW TYDKAKIDLV ENSBTAP00000022855/1-614 LFHDGRVQWT PPAIYKSSCS IDVTFFPFDQ QNCTMKFGSW TYDKAKIDLV bmy_14481T0/1-625 LFHDGRVQWT PPAIYKSSCS IDVTFFPFDQ QNCTMKFGSW TYDKAKIDLV ENSTTRP00000001719/1-549 LFHDGRVQWT PPAIYKSSCS IDVTFFPFDQ QNCTMKFGSW TYDKAKIDLV 251 300 BACU011244/1-625 SMHSRVDQLD FWESGEWVIV DAVGTYNTRK YECCAEVYPD ITYAFVIRRL ENSP00000359285/1-627 NMHSRVDQLD FWESGEWVIV DAVGTYNTRK YECCAEIYPD ITYAFVIRRL ENSBTAP00000022855/1-614 SMHSRVDQLD FWDSGEWVIV DAVGTYNTRK YECCAEVYSD ITYAFIIRRL bmy_14481T0/1-625 SMHSRVDQLD FWESGEWVIV DAVGTYNTRK YECCAEVYPD ITYAFVIRRL ENSTTRP00000001719/1-549 SMHSHVDQLG FWESGEWVIV DAVGTYNTRK YECCAEVYPD ITYAFVIRRL 301 350 BACU011244/1-625 PLFYTVNLII PCLLISCLTV LVFYLPSECG EKITLCISVL LSLTVFLLLI ENSP00000359285/1-627 PLFYTINLII PCLLISCLTV LVFYLPSECG EKITLCISVL LSLTVFLLLI ENSBTAP00000022855/1-614 PLFYTINLII PCLLISCLTV LVFYLPSECG EKITLCISVL LSLTVFLLLI bmy_14481T0/1-625 PLFYTVNLII PCLLISCLTV LVFYLPSECG EKITLCISVL LSLTVFLLLI ENSTTRP00000001719/1-549 PLFYTVNLIA PCLLVSCLAV LVFYLPSECG EKVTLCVSVL LSLTVFLLLI 351 400 BACU011244/1-625 TEIIPSTSLV IPLISEYLLF TMIFVTLSIV ITVFVLNVHH RSASTHNMPH ENSP00000359285/1-627 TEIIPSTSLV IPLIGEYLLF TMIFVTLSIV ITVFVLNVHH RSPRTHTMPT ENSBTAP00000022855/1-614 TEIIPSTSLV IPLIGEYLLF TMIFVTLSII ITVFVLNVHH RSPRTHTMPA bmy_14481T0/1-625 TEIIPSTSLV IPLIGEYLLF TMIFVTLSII IAVFTLNVHH RSPRTHTMPA ENSTTRP00000001719/1-549 TEITPSTSLV IPLIGEYLLF TMTFVTLSIT ITVFVLNVHH RSPRTHTMPA 401 450 BACU011244/1-625 WVRVVFLGCV SRWLLISRPL ---------- ---------- ---------P ENSP00000359285/1-627 WVRRVFLDIV PRLLLMKRPS VVKDNCRRLI ESMHKMASAP RFWPEPEGEP ENSBTAP00000022855/1-614 WVRRVFLDIV PRLLFMKRPS VVKDHCRRLI ESMHKAASTP HFWPEPQGEP bmy_14481T0/1-625 WVRRVFLDVV PRLLFMKRPS VVKDNCRRLL ESVHKAAGAP RFWPEPRGEP ENSTTRP00000001719/1-549 WVRRVFLDVV PRLLFMKRPS AVKDNCRRLV GSVHEAAGAP RFWPEPRGEP 451 500 BACU011244/1-625 PLELRDP--- -PDQKLC--- -------PSY RWLETNVDAE EREEEEEGRW ENSP00000359285/1-627 PATSGTQSLH PPSPSFCVPL DVPAEPGPSC KSPSDQLPPQ QPLEAEKAS- ENSBTAP00000022855/1-614 A--------- -RSPSLTCGV DQPIKPQPAR TTPSDQVPTL QPSETEKAS- bmy_14481T0/1-625 ELRSTGPA-- -PSPTPSCGP DQPGKPQPAC TSPSDQASAL QPSEAEKAS- ENSTTRP00000001719/1-549 ELRSRGPA-- -PSPTPSCGP D-----RPAC TSPSDQASAL RPSEAEKAG- 501 550 BACU011244/1-625 ACA--GHSSP FT-----GLA KARSLSVQHV SGPSEVADGG VRCRSQSIQY ENSP00000359285/1-627 PHPSPGPCRP PHGTQAPGLA KARSLSVQHM SSPGEAVEGG VRCRSRSIQY ENSBTAP00000022855/1-614 PCLSPGPCRP LTGTQAPGLT KSRSLSVQHV SSPSKAVEDG VRCRSRSIQY bmy_14481T0/1-625 PCPSPGPCRP ------PGLA KARSLSVQHV SGPSEVAEGG VRCRSQSIQY ENSTTRP00000001719/1-549 PCPSPGPCRP PTGTRAPGLA KARSLSVQHV SGPSEVAEGG VRCRSQSIQY 551 600 BACU011244/1-625 CVPREEAASP ADRPADGSPA SLTTAPPAEL PPPDQASPCK CKCRKEAE-- ENSP00000359285/1-627 CVPRDDAAPE ADGQAAGALA SRNT-HSAEL PPPDQPSPCK CTCKKEPSSV ENSBTAP00000022855/1-614 CGPREEAASP AAHLADSSPS SPTKAPSAEL PPPDQAASCK CQCRKEPG-- bmy_14481T0/1-625 CVPGEEAASP ADRPADGSPA SLTTAPSAEL PPPDQASPCK CKCRKEAE-- ENSTTRP00000001719/1-549 CAPREEAASP ADRPADGSPA SLTTAPSAEL LPPDQASPCK CKCRTEAE-- 601 650 BACU011244/1-625 APNAALKAPG TGAPP--LPL SPALARAVEG VQYIADHLRA EDMDFSVRQD ENSP00000359285/1-627 SPSATVKTRS TKAPPPHLPL SPALTRAVEG VQYIADHLKA EDTDFSVKED ENSBTAP00000022855/1-614 APNATLKTSS TRAPP--LPL SPALARAVEG VQYIADHLKA EDTDFSVKED bmy_14481T0/1-625 APNAALKAPG TRAPP--LPL SPALARAVEG VQYIADHLKA EDTDFSVKQD ENSTTRP00000001719/1-549 APNAALKAPG AGTPP--QPL SPALARAVEG VQYIADHLKA EDMDFS---- 651 700 BACU011244/1-625 WKYVAMVIDR IFLWVFILVC LLGTVGLFLP PWLAGMI ENSP00000359285/1-627 WKYVAMVIDR IFLWMFIIVC LLGTVGLFLP PWLAGMI ENSBTAP00000022855/1-614 WKYVAMVIDR IFLWVFIIVC LLGTAGLFLP PWLAGMI bmy_14481T0/1-625 WKYVAMVIDR IFLWVFILVC LLGTVGLFLP PWLAGMI ENSTTRP00000001719/1-549 ---------- ---------- ---------- -------