KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:17:24 2014 Check: 00 .. Name: ENSP00000364412/1-310 Len: 316 Check: 3434 Weight: 1.00 Name: bmy_20472T0/1-229 Len: 316 Check: 3732 Weight: 1.00 Name: ENSBTAP00000022431/1-310 Len: 316 Check: 3460 Weight: 1.00 Name: BACU018522/1-316 Len: 316 Check: 8664 Weight: 1.00 Name: ENSTTRP00000001631/1-310 Len: 316 Check: 104 Weight: 1.00 // 1 50 ENSP00000364412/1-310 MGDVLEQFFI LTGLLVCLAC LAKCVRFSRC VLLNYWKVLP KSFLRSMGQW bmy_20472T0/1-229 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022431/1-310 MKEALEQFFI FVGLLVCLVY LMKCVRFSKC IFLHFWKVLP RSFLKSVGEW BACU018522/1-316 MGEVLEQFFI FVGLLVCLVH LMKCVRFSKC IFLHFWKVSP RSFLKSMGQW ENSTTRP00000001631/1-310 MGEVLAQFFI FVGLLVCLVH LVKCVRFSKC IFLHFWKVSP RSFLKSMGQW 51 100 ENSP00000364412/1-310 AV--ITGAGD GIGKAYSFEL AKRGLNVVLI SRTLEKLEAI ATEIERTTGR bmy_20472T0/1-229 ---------- ---------L ARQGLNVVLI SRTPEKLQAI AAEIEWTIGS ENSBTAP00000022431/1-310 AV--ITGAGD GIGKAYSFEL ARQGFNVVLI SRTLEKLQAI AAEIELTIGS BACU018522/1-316 AAFPVCLSSP FWFSRPYPQL ARQGLNVVLI SRTLEKLQAI AAEIEWTIGS ENSTTRP00000001631/1-310 AX--XXXXXX XXXXXXXXXL ARQGLNVVLI SRTLEKLQAI AAEIEWTIGS 101 150 ENSP00000364412/1-310 SVKIIQADFT KDDIYEHIKE KLAGLEIGIL VNNVGMLPNL LPSHFLNAPD bmy_20472T0/1-229 SVKIIQADFT KDDIYEYIKE KLKDLEIGIL GNKIRSTFSV KEAPRTDSVV ENSBTAP00000022431/1-310 TVKIIQADFA KDDIYDYIKE KLKGLEIGIL VNNVGMLPNL LPSHFLNTSD BACU018522/1-316 SVKIIQADFT KDDIYEYIKE KLKDLEIGIL VNNVGMLPNL LPRHFLNTPD ENSTTRP00000001631/1-310 SVKIIQADFT KDDIYEYIKE KLKDLEIGIL VNNVGMLPNL LPRHFLNTPD 151 200 ENSP00000364412/1-310 EIQSLIHCNI TSVVKMTQLI LKHMESRQKG LILNISSGIA L----FPWPL bmy_20472T0/1-229 GVVSLIHCNI TSVVKMTQLI LKHMESRQKG LILNISSGVA L----FPWPL ENSBTAP00000022431/1-310 DIQSLIHCNI TSVVKMTQLI LKHMESRQKG LILNISSGVA L----FPWPL BACU018522/1-316 DIQSLIHCNI TSVVKMTQLI LKHMESRRKG LILNISSGVA LXXXXXPWPL ENSTTRP00000001631/1-310 DIQSLVHCNI TSVVKMTQLI LKHMESRRKG LILNISSGAA L----FPWPL 201 250 ENSP00000364412/1-310 YSMYSASKAF VCAFSKALQE EYKAKEVIIQ VLTPYAVSTA MTKYLNTNVI bmy_20472T0/1-229 YSTYSASKAF VCTFSKALQA EYKEKGIIIQ VLTPYAVSTP MTKYLNTNMI ENSBTAP00000022431/1-310 YSMYSASKAF VCTFSKALQA EYKDKGIIIQ VLTPYAISTP MTKYLSTNMI BACU018522/1-316 YSTYSASKAF VCTFSKALQA EYKEKGIIIQ VLTPYAVSTP MTKYLNTNMI ENSTTRP00000001631/1-310 YSTYSASKAF VCTFSKALQA EYKEKGIIIQ VLTPYAVSTP MTKYLNTNMI 251 300 ENSP00000364412/1-310 TKTADEFVKE SLNYVTIGGE TCGCLAHEIL AGFLSLIPAW AFYSGAFQRL bmy_20472T0/1-229 TKTADEFVKE SLNYVTIGDE TCGCLAHEIL -----VIDNF SF-------- ENSBTAP00000022431/1-310 TKTADEFVKE SLNYVTIGDE ICGCLTHEIL AVILSLIPSW AFYSSVFQKM BACU018522/1-316 TKTANEFVKE SLNYVTIGDE TCGCLAHEIL ASILSVIPSW AFYSSVFQKM ENSTTRP00000001631/1-310 TKTADEFVKE SLNYVTIGDE TCGCLAHEIL ASILSLIPSW AFYSSVFQKM 301 350 ENSP00000364412/1-310 LLTHYVAYLK LNTKVR bmy_20472T0/1-229 -LEAREDRQA GGPSRA ENSBTAP00000022431/1-310 LLTRYVDYLK KNANIR BACU018522/1-316 LLTRYMDYLK QNANIR ENSTTRP00000001631/1-310 LLTRYMDYLK QNANIT