KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:17:17 2014 Check: 00 .. Name: ENSTTRP00000004054/1-482 Len: 687 Check: 5441 Weight: 1.00 Name: ENSP00000407545/1-634 Len: 687 Check: 6425 Weight: 1.00 Name: bmy_14332T0/1-634 Len: 687 Check: 3616 Weight: 1.00 Name: ENSBTAP00000022387/1-634 Len: 687 Check: 3056 Weight: 1.00 // 1 50 ENSTTRP00000004054/1-482 QDGGGRGPGC GSGRRVRGGG PGARGPRPPR PPSSFPCSCG WGGTPSLHTM ENSP00000407545/1-634 ---------- ---------- ---------- ---------- ---------M bmy_14332T0/1-634 ---------- ---------- ---------- ---------- ---------M ENSBTAP00000022387/1-634 ---------- ---------- ---------- ---------- ---------M 51 100 ENSTTRP00000004054/1-482 EPSPLSPSGA ALPLPLSLAP PPLPLPAAAV VHVSFPEVTS ALLESLNQQR ENSP00000407545/1-634 EPSPLSPSGA ALPLPLSLAP PPLPLPAAAV VHVSFPEVTS ALLESLNQQR bmy_14332T0/1-634 EPSPLSPSGA ALPLPLSLAP PPLPLPAAAV VHVSFPEVTS ALLESLNQQR ENSBTAP00000022387/1-634 EPSPLSPSGA ALPLPLSLAP PPLPLPAAAV VHVSFPEVTS ALLESLNQQR 101 150 ENSTTRP00000004054/1-482 LQGQLCDVSI RVQGREFRAH RAVLAASSPY FHDQVLLKGM TSISLPSVMD ENSP00000407545/1-634 LQGQLCDVSI RVQGREFRAH RAVLAASSPY FHDQVLLKGM TSISLPSVMD bmy_14332T0/1-634 LQGQLCDVSI RVQGREFRAH RAVLAASSPY FHDQVLLKGM TSISLPSVMD ENSBTAP00000022387/1-634 LQGQLCDVSI RVQGREFRAH RAVLAASSPY FHDQVLLKGM TSISLPSVMD 151 200 ENSTTRP00000004054/1-482 PGAFETVLAS AYTGRLSMAA ADIVNFLTVG SVLQMWHIVD KCTELLREGR ENSP00000407545/1-634 PGAFETVLAS AYTGRLSMAA ADIVNFLTVG SVLQMWHIVD KCTELLREGR bmy_14332T0/1-634 PGAFETVLAS AYTGRLSMAA ADIVNFLTVG SVLQMWHIVD KCTELLREGR ENSBTAP00000022387/1-634 PGAFETVLAS AYTGRLSMAA ADIVNFLTVG SVLQMWHIVD KCTELLREGR 201 250 ENSTTRP00000004054/1-482 ASATTTTITT AAATSVTVPG AGVTSGSGGT VAPATVGSVR FHASSRASEN ENSP00000407545/1-634 ASAT-TTITT AAATSVTVPG AGVPSGSGGT VAPATMGSAR SHASSRASEN bmy_14332T0/1-634 ASATTTTITT AAATSVTVPG AGVPSGSGGT VAPATVGSVR FHASSRASEN ENSBTAP00000022387/1-634 ASASATTVTT AAATSVTVPG AGVPSGSGGT VAPATVSSVR SHASSRASEN 251 300 ENSTTRP00000004054/1-482 QSPSSSNYFS PRESTDFSSS AQEAFAASAV GSRERQGGGP VFPAPVVGSG ENSP00000407545/1-634 QSPSSSNYFS PRESTDFSSS SQEAFAASAV GSGERRGGGP VFPAPVVGSG bmy_14332T0/1-634 QSPSSSNYFS PRESTDFSSS SQEAFAASAV GSGERRGGGP VFPAPVVGSG ENSBTAP00000022387/1-634 QSPSSSNYFS PRESTDFSSS SQEAFAASAV GSGERRTGGP VFPAPVVGSG 301 350 ENSTTRP00000004054/1-482 GATSGKLLLE ADELCDDGGD GRGAVVPGAG LRRPTYAPPS IVPQKHWVYV ENSP00000407545/1-634 GATSGKLLLE ADELCDDGGD GRGAVVPGAG LRRPTYTPPS IMPQKHWVYV bmy_14332T0/1-634 GATSGKLLLE ADELCDDGGD GRGAVVPGAG LRRPTYAPPS IVPQKHWVYV ENSBTAP00000022387/1-634 GATSGKLLLE ADELCDDGGD GRGAVVPGAG LRRPTYTPPS IVPQKHWVYV 351 400 ENSTTRP00000004054/1-482 KRGGNCPAPA PLVPQDPDLE EDEEEEDLVL TCEDDEDEEL GGGSGVPPGG ENSP00000407545/1-634 KRGGNCPAPT PLVPQDPDLE EEEEEEDLVL TCEDDEDEEL GGSSRVPVGG bmy_14332T0/1-634 KRGGNCPAPA PLVPQDPDLE EDEEEEDLVL TCEDDEDEEL GGGSGVPAGG ENSBTAP00000022387/1-634 KRGGNCPASA PLAPQDPDLE EEEEEEDLVL TCEDDEDEEL GGGSGVPARG 401 450 ENSTTRP00000004054/1-482 GSEATLSICD VWTLSDPPDK GEEQVNFCES SNDFGPYEGG GTAAGFDESR ENSP00000407545/1-634 GPEATLSISD VRTLSEPPDK GEEQVNFCES SNDFGPYEGG GPVAGLDDSG bmy_14332T0/1-634 GPEATLSISD VRTLSEPPDK GEEQVNFCES SNDFGPYEGG GPGAGLDDSG ENSBTAP00000022387/1-634 GPEATLSISD VRTLSEPPDK GEEQVNFCES SNDFGPYEGG GPGAGLDDSG 451 500 ENSTTRP00000004054/1-482 GPTPSSYALS NSRGLLHPLD M-CNQILVLP SST------- ---------- ENSP00000407545/1-634 GPTPSSYAPS HPPRPLLPLD MQGNQILVFP SSSSSSSSQ- APGQPPGNQA bmy_14332T0/1-634 GPTPSSYAPS HPSRPLLPLD MQGNQILVFP SSSSSSSSSQ APGQPPGNQA ENSBTAP00000022387/1-634 GPTPSSYAPA HPPRPLLPLD MQGNQILIFP SSSSSSSSS- ---QPPGNQA 501 550 ENSTTRP00000004054/1-482 ---------- ---------- ---------- ---------- ---------- ENSP00000407545/1-634 EHGAVTVGGT SVGSLGVPGS VGGVPGGTGS GDGNKIFLCH CGKAFSHKSM bmy_14332T0/1-634 EHGAVTLGST SAGALGMPGG TGGAPGGTGS GDGNKIFLCH CGKAFSHKSM ENSBTAP00000022387/1-634 EHGAVTLGGT LAGALGGPGG TGGTPGGTGS GDGNKIFLCH CGKAFSHKSM 551 600 ENSTTRP00000004054/1-482 ---------- ---------- ---------- ---------- ---------- ENSP00000407545/1-634 RDRHVNMHLN LRPFDCPVCN KKFKMKHHLT EHMKTHTGLK PYECGVCAKK bmy_14332T0/1-634 RDRHVNMHLN LRPFDCPVCN KKFKMKHHLT EHMKTHTGLK PYECGVCAKK ENSBTAP00000022387/1-634 RDRHVNMHLN LRPFDCPVCN KKFKMKHHLT EHMKTHTGLK PYECSVCAKK 601 650 ENSTTRP00000004054/1-482 ---------- ---------- ---------- ---------- ---------- ENSP00000407545/1-634 FMWRDSFMRH RGHCERRHRL -GGVGAVPGP -GTPTGPSLP SKRESPGVGG bmy_14332T0/1-634 FMWRDSFMRH RGHCERRHRL -GGGGG-AGP -GGTTGPALQ PKRESP-GGG ENSBTAP00000022387/1-634 FMWRDSFMRH RGHCERRHHL GGGGGGGPGP GGGPSGPALQ PKRESPCGGG 651 700 ENSTTRP00000004054/1-482 ---------- ---------- ---------- ------- ENSP00000407545/1-634 GSGDEASAAT PPSSRRVWSP PRVHKVEMGF GGGGGAN bmy_14332T0/1-634 GSGDEASGAT PPSSRRVWSP PSVHKVEMGF SGGGGAN ENSBTAP00000022387/1-634 GSGDEASGAT PPSSRCVWSP LSVHKVEMGF SGGGGAN