KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:16:21 2014 Check: 00 .. Name: BACU011233/1-504 Len: 815 Check: 5348 Weight: 1.00 Name: ENSP00000245663/1-589 Len: 815 Check: 4015 Weight: 1.00 Name: ENSBTAP00000022163/1-589 Len: 815 Check: 8706 Weight: 1.00 Name: bmy_14495T0/1-686 Len: 815 Check: 756 Weight: 1.00 Name: ENSTTRP00000011598/1-466 Len: 815 Check: 7023 Weight: 1.00 // 1 50 BACU011233/1-504 -------MGL RLLPRPHPRL EQGQQRAGSA GNAPRIARPL AAQPGSP--- ENSP00000245663/1-589 MNNRKEDMEI TSHYRHLLRE LNEQRQHGVL CDVCVVVEGK VFKAHKNVLL ENSBTAP00000022163/1-589 MNNRKEDMEI ASHYRHLLRE LNEQRQHGVL CDVCVVVEGK VFKAHKNVLL bmy_14495T0/1-686 -------MEI ASHYRHLLHE LNEQRQHGVL CDVCVVVEGK VFKAHKNVLL ENSTTRP00000011598/1-466 MNSRREDMEI ASHYRHLLHE LNEQRQHGVL CDVCVVVEGK VFKAHKNVLL 51 100 BACU011233/1-504 PSSSWASDVR CAPDEVEAQT SDAQTHARRR PPPLPGNQAP WPRTHPDPWP ENSP00000245663/1-589 GSSRYFKTLY CQVQ----KT SEQATVTHLD IVTAQGFKAI IDFMYSAHLA ENSBTAP00000022163/1-589 GSSRYFKTLY CQVQ----KT SEQATVTHLD IVTAQGFKAI IDFMYSAHLA bmy_14495T0/1-686 GSSRYFKTLY CQVQ----KA SDQATVTHLD IVTAQGFKAI IDFMYSAHLA ENSTTRP00000011598/1-466 GSSRYFKTLY CQVQ----KA SDQATVTHLD IVTAQGFKAI IDFMYSAHLA 101 150 BACU011233/1-504 LKKP---PVC AWDPVLPSSP VAAGSVAHTL SRTEVEQAGQ PEPDASDELS ENSP00000245663/1-589 LTSRNVIEVM SAASFLQMTD IV--QACHDF IKAALDISIK --SDASDELA ENSBTAP00000022163/1-589 LTSRNVIEVM SAASFLQMTD IV--QACHDF IKAALDISIK --PDASDELE bmy_14495T0/1-686 LTSRNVIEVM SAASFLQMTD IV--QACHDF IKAALDISIK --PDASDELS ENSTTRP00000011598/1-466 LTSRNVIEVM SAASFLQMTD IV--QACHDF IKAALDISIK --PDASDELS 151 200 BACU011233/1-504 EFEVGAPPGS GADALISAVM AGRSISPWLA RRTSPANSSG DSAIASCHEG ENSP00000245663/1-589 EFEIGASSSS STEALISAVM AGRSISPWLA RRTSPANSSG DSAIASCHDG ENSBTAP00000022163/1-589 AFEVGAPPGG GADALISAVM AGRSISPWLA RRTSPANSSG DSAIASCHEG bmy_14495T0/1-686 EFEVGAPPGS GADALISAVM AGRSISPWLA RRTSPANSSG DSAIASCHEG ENSTTRP00000011598/1-466 EFEVGAPPSS GADALISAVM AGRSISPWLA RRTSPANSSG DSAIASCHEG 201 250 BACU011233/1-504 GSSYGKEDQE PKADGPDDLP SQPLWPGDMG CGPLHVKEEQ LSPTHYGGSE ENSP00000245663/1-589 GSSYGKEDQE PKADGPDDVS SQPLWPGDVG YGPLRIKEEQ VSPSQYGGSE ENSBTAP00000022163/1-589 GSSYGKEDQE PKTEGPDDLA SQPLWPGDVG CGPLHVKEEP LSPAHYGGSE bmy_14495T0/1-686 GSSYGKEDQE PKADGPDDLA SQPLWPGDVG CGPLHVKEEQ LSPTHYGGSE ENSTTRP00000011598/1-466 GSSCGKEDQE PKADGPADLS SQPLWPGDVG YGPLHIKEER LSPAHYGGSE 251 300 BACU011233/1-504 PPSAGDAAIQ NSFSEQAAGD GWQPTGRRKN RKNKDTVRHI TQHAEDDSRA ENSP00000245663/1-589 LPSAKDGAVQ NSFSEQSAGD AWQPTGRRKN RKNKETVRHI TQQVEDDSRA ENSBTAP00000022163/1-589 PPSAMDGTIQ NSFSEQTAGD GWQPTGRRKN RKNKDTVRHI TQQVEEDSRA bmy_14495T0/1-686 PPSAGDAAVQ NSFSEQAAGD GWQPTGRRKN RKNKDTVRHI TQRAEDDSRA ENSTTRP00000011598/1-466 PPSAGDGAAQ NSFSEQAAGD GWQPTGRRKN RKNKDTVRHI TQQVEDDSRA 301 350 BACU011233/1-504 GSPLPSFLPT SGWPFGSRDS ---------- ---------- ---------- ENSP00000245663/1-589 SSPVPSFLPT SGWPFSSRDS ---------- ---------- ---------- ENSBTAP00000022163/1-589 GSPLPSFLPT SGWPFSSRDS ---------- ---------- ---------- bmy_14495T0/1-686 GSPLPSPLPT PGWPFSRRDS KMSGIAWNSS GRPRGRARGA AVAPTPQQWP ENSTTRP00000011598/1-466 GSPLPSFLPT SGWPFSSRDS ---------- ---------- ---------- 351 400 BACU011233/1-504 ---NADLTVA EASSSDSRGE RPELYAHVDE GLLGGEGSYP GAPLTPEKDD ENSP00000245663/1-589 ---NADLSVT EASSSDSRGE RAELYAQVEE GLLGGEASYL GPPLTPEKDD ENSBTAP00000022163/1-589 ---NADLTIA EASSSDSRGE RPEFLAHVDE GLLGGEGSYL GAPLTPEKDD bmy_14495T0/1-686 SWGDADLTVA EASSSDSRGE RPELYAHVDE GLLGGEGSYP GAPLTPEKDD ENSTTRP00000011598/1-466 ---NADLTVA EASSSDSRGE RPELYAHVDE GLLGGEGSYL GAPLTPEKDD 401 450 BACU011233/1-504 ALHQATAVAN LRAALMSKNS LLALKADVLA DDSSLLLEYL PKGTHSLS-- ENSP00000245663/1-589 ALHQATAVAN LRAALMSKNS LLSLKADVLG DDGSLLFEYL PRGAHSLS-- ENSBTAP00000022163/1-589 ALHQATAVAN LRAALMSKNS LLALKADVLG EDSSLLLEYL PKGAHSLS-- bmy_14495T0/1-686 ALHQATAVAN LRAALMSKNS LLALKADVLA DDSSLLLEYL PKGTHSLSRR ENSTTRP00000011598/1-466 ALHQATAVAN LRAALMSKNS LLALKADVLA DDSSLLLEYL PKGTHSLS-- 451 500 BACU011233/1-504 ---------- ---------- ---------- ---------- ---------- ENSP00000245663/1-589 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022163/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14495T0/1-686 CPSDREAWAE GRAPPEVAPA ERCEDEAQSP QPWCALPATC EGDRVTKLAS ENSTTRP00000011598/1-466 ---------- ---------- ---------- ---------- ---------- 501 550 BACU011233/1-504 ---------- ---------- ---------- ---------- ---------- ENSP00000245663/1-589 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022163/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14495T0/1-686 FQKEHIVLAG VQLPWTRWAH VCGWLRMQGL QDPWPSSRAG GALAVFRADV ENSTTRP00000011598/1-466 ---------- ---------- ---------- ---------- ---------- 551 600 BACU011233/1-504 ---------- ---------- ---------- ---------- ---------- ENSP00000245663/1-589 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022163/1-589 ---------- ---------- ---------- ---------- ---------- bmy_14495T0/1-686 KTGVCAGGTG GRQVWGAVLL PRRPGGSGRA WWSDRKGDVE WGLPAGTLAY ENSTTRP00000011598/1-466 ---------- ---------- ---------- ---------- ---------- 601 650 BACU011233/1-504 ---------- ---------- ---------- LNEFTVIRKK FRCPYCSFSA ENSP00000245663/1-589 ---------- ---------- ---------- LNEFTVIRKK FKCPYCSFSA ENSBTAP00000022163/1-589 ---------- ---------- ---------- LNEFTVIRKK FRCPYCSFSA bmy_14495T0/1-686 SVAGSSSANS GDRHLCSAYR SMALALRRTE VNEFTVIRKK FRCPYCSFSA ENSTTRP00000011598/1-466 ---------- ---------- ---------- LNEFTVIRKK FRCPYCSFSA 651 700 BACU011233/1-504 MHQCILKRHM RSHTGERPYP CEICGKKFTR REHMKRHTLP LEGSEGLARS ENSP00000245663/1-589 MHQCILKRHM RSHTGERPYP CEICGKKFTR REHMKRHTLV HSKDKKYVCK ENSBTAP00000022163/1-589 MHQCILKRHM RSHTGERPYP CEICGKKFTR REHMKRHTLV HSKDKKYVCK bmy_14495T0/1-686 MHQCILKRHM RSHTGERPYP CEICGKKFTR REHMKRHTLR VPEALGLKCN ENSTTRP00000011598/1-466 MHQCILKRHM RSHTGERPYP CEICGKKFTR REHMKRHTL- ---------- 701 750 BACU011233/1-504 S--------- ---------- ---------- ---------- ---------- ENSP00000245663/1-589 VCSRVFMSAA SVGIRHGSRR HGVCTDCAGR GMAGPLDHGG GGGEGSPEAL ENSBTAP00000022163/1-589 LCSRVFMSAA SVGIKHGSRR HGVCADCAGG GGAGSLD--- GGGAEGSPEL bmy_14495T0/1-686 K--------- ---------- ---------- ---------- ---------- ENSTTRP00000011598/1-466 ---------- ---------- ---------- ---------- ---------- 751 800 BACU011233/1-504 ---------- ---------- ----GTGAAQ MNLLGQEVIE KVTIETGRQI ENSP00000245663/1-589 FPGDGPYLED PEDPRGEAEE ---LGEDDEG LAPEDALLAD DKDEEDSPRP ENSBTAP00000022163/1-589 FAGDGPYLED PEDPRGEGEE ELGEDEDDVG LAPEDTLLGD KEDDDSPRGP bmy_14495T0/1-686 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011598/1-466 ---------- ---------- ---------- ---------- ---------- 801 850 BACU011233/1-504 HQNTA----- ----- ENSP00000245663/1-589 RSPPGGPDKD FAWLS ENSBTAP00000022163/1-589 HSPTGGADKD FAWIS bmy_14495T0/1-686 ---------- ----- ENSTTRP00000011598/1-466 ---------- -----