KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:15:25 2014 Check: 00 .. Name: ENSP00000228740/1-611 Len: 632 Check: 5606 Weight: 1.00 Name: ENSBTAP00000021833/1-611 Len: 632 Check: 3393 Weight: 1.00 Name: ENSTTRP00000005746/1-610 Len: 632 Check: 848 Weight: 1.00 Name: bmy_13868T0/1-603 Len: 632 Check: 6042 Weight: 1.00 Name: BACU000953/1-611 Len: 632 Check: 3231 Weight: 1.00 // 1 50 ENSP00000228740/1-611 MPEIVDTCSL ASPASVCRTK HLHLRCSVDF TRRTLTGTAA LTVQSQEDNL ENSBTAP00000021833/1-611 MPEVVDTCSL ASPASVCQTK HLHLRCSIDF TRRVLSGTAA LTIQSQEDNL ENSTTRP00000005746/1-610 MPEVVDTCSL ASPASVCRTK HLHLRCSVDF TRRVLIGTAA LTVQSQEDNL bmy_13868T0/1-603 MPEVVDACSL ASPVSVCRTK HLHLRCSVDF TRRVLTGTAA LTVQSQEDNL BACU000953/1-611 MPEVVDACSL ASPVSVCRTK HLHLRCSVDF TRRVLTGTAA LTVQSQEDNL 51 100 ENSP00000228740/1-611 RSLVLDTKDL TIEKVVINGQ EVKYALGERQ SYKGSPMEIS LPIALSKNQE ENSBTAP00000021833/1-611 RSLILDTKDL TIEKVVINGQ EVKYTLGERQ SYKGSPIEIS LPIALCKNQE ENSTTRP00000005746/1-610 RSLTLDTKDL TIEKVVINGQ EVKYALGERQ SYKGSPMEIS LPIALCKNQE bmy_13868T0/1-603 RSLILDTKDL TIEKVVINGQ EVKYALGERQ SYKGSPMEIS LPIALCKNQE BACU000953/1-611 RSLILDTKDL TIEKVVINGQ EVKYALGERQ SYKGSPVEIS LPIALCKNQE 101 150 ENSP00000228740/1-611 IVIEISFETS PKSSALQWLT PEQTSGKEHP YLFSQCQAIH CRAILPCQDT ENSBTAP00000021833/1-611 IVIEISFETS PKSSALQWLT PEQTSGKEHP YLFSQCQAIH CRAILPCQDT ENSTTRP00000005746/1-610 IVIEISFETS PKSSALQWLT PEQTSGKEHP YLFSQCQAIH CRAVLPCQDT bmy_13868T0/1-603 IVIEISFETS PKSSALQWLT PEQTSGKEHP YLFSQCQAIH CRAILPCQDT BACU000953/1-611 IVIEISFETS PKSSALQWLT PEQTSGKEHP YLFSQCQAIH CRAILPCQDT 151 200 ENSP00000228740/1-611 PSVKLTYTAE VSVPKELVAL MSAIRDGETP DPEDPSRKIY KFIQKVPIPC ENSBTAP00000021833/1-611 PSVKLTYSAE VSVPKELVAL MSAIRDGEAP DPEDPNRKIY RFSQKVPIPC ENSTTRP00000005746/1-610 PSVKLTYSSE VSVPKELVAL MSAIRDGEAP DPEDASRKIY RFSQKVPIPC bmy_13868T0/1-603 PS-------- VSVPKELVAL MSAIRDGEAP DPEDTSRKIY RFSQKVPIPC BACU000953/1-611 PSVKLTYSAE VSVPKELVAL MSAIRDGEAP DPEDTSRKIY RFSQKVPIPC 201 250 ENSP00000228740/1-611 YLIALVVGAL ESRQIGPRTL VWSEKEQVEK SAYEFSETES MLKIAEDLGG ENSBTAP00000021833/1-611 YLIALVVGAL ESRQIGPRTL VWSEKEQVEK SAYEFSETES MLKIAEDLGG ENSTTRP00000005746/1-610 YLIALVVGAL ESRQIGPRTL VWSEKEQVEK SAYEFSETES MLKIAEDLGG bmy_13868T0/1-603 YLIALVVGAL ESRQIGPRTL VWSEKEQVEK SAYEFSETES MLKIAEDLGG BACU000953/1-611 YLIALVVGAL ESRQIGPRTL VWSEKEQVEK SAYEFSETES MLKIAEDLGG 251 300 ENSP00000228740/1-611 PYVWGQYDLL VLPPSFPYGG MENPCLTFVT PTLLAGDKSL SNVIAHEISH ENSBTAP00000021833/1-611 PYIWGQYDLL VLPPSFPYGG MENPCLTFVT PTLLAGDKSL SNVIAHEISH ENSTTRP00000005746/1-610 PYIWGQYDLL VLPPSFPYGG MEHPCLTFVT PTLLAGDKSL SNVIAHEISH bmy_13868T0/1-603 PYIWGQYDLL VLPPSFPYGG MEHPCLTFVT PTLLAGDKSL SNVIAHEISH BACU000953/1-611 PYIWGQYDLL VLPPSFPYGG MEHPCLTFVT PTLLAGDKSL SNVIAHEISH 301 350 ENSP00000228740/1-611 SWTGNLVTNK TWDHFWLNEG HTVYLERHIC GRLFGEKFRH FNALGGWGEL ENSBTAP00000021833/1-611 SWTGNLVTNK TWDHFWLNEG HTVYLERHIC GRLFGEKFRH FHALGGWGEL ENSTTRP00000005746/1-610 SWTGNLVTNK TWDHFWLNEG HTVYLERHIC GRLFGEKFRH FHALGGWGEL bmy_13868T0/1-603 SWTGNLVTNK TWDHFWLNEG HTVYLERHIC GRLFGEKFRH FHALGGWGEL BACU000953/1-611 SWTGNLVTNK TWDHFWLNEG HTVYLERHIC GRLFGEKFRH FHALGGWGEL 351 400 ENSP00000228740/1-611 QNSVKTFGET HPFTKLVVDL TDIDPDVAYS SVPYEKGFAL LFYLEQLLGG ENSBTAP00000021833/1-611 QNSIKTFGET HPFTKLVVDL TNTDPDVAYS SVPYEKGFAL LFYLEQLLGG ENSTTRP00000005746/1-610 QNSIKTFGET HPFTK-VVDL TNVDPDVAYS SVPYEKGFAL LFYLEQLLGG bmy_13868T0/1-603 QNSIKTFGET HPFTKLVVDL TNVDPDVAYS SV-------- ---------- BACU000953/1-611 QNSIKTFGET HPFTKLVVDL TNVDPDVAYS SVPYEKGFAL LFYLEQLLGG 401 450 ENSP00000228740/1-611 PEIFLGFLKA YVEKFSYKSI TTDDWKDFLY SYFKDKVDVL NQVDWNAWLY ENSBTAP00000021833/1-611 PEVFLGFLKA YVEKFSYKSI TTDNWKDFLY SHFKDKVDIL NQVDWNTWLY ENSTTRP00000005746/1-610 PEVFLGFLKA YVEKFSYKSI TTDDWKDFLY SHFKDKVDIL NQVDWNAWLY bmy_13868T0/1-603 ---FLGFLKA YVEKFSYKSI TTDDWKDFLY SYFKDKVDAL NQVDWNAWLY BACU000953/1-611 PEVFLGFLKA YVEKFSYKSI TTDDWKDFLY SHFKDKVDTL NQVDWNAWLY 451 500 ENSP00000228740/1-611 SPGLPPIKPN YDMTLTNACI ALSQRWIT-- ---------- ---------A ENSBTAP00000021833/1-611 SPGLPPVKPN YDMTLTNACI SLSQRWIT-- ---------- ---------A ENSTTRP00000005746/1-610 SPGLPPVKPN YDMTLTNACI ALSQRWIT-- ---------- ---------G bmy_13868T0/1-603 SPGLPPVKPN YDMTLTNACI ALSQRWITIN QYVLLNRTRM AVIRQHLLQG BACU000953/1-611 SPGLPPVKPN YDMTLTNACI ALSQRWIT-- ---------- ---------G 501 550 ENSP00000228740/1-611 KEDDLNSFNA TDLKDLSSHQ LNEFLAQTLQ RAPLPLGHIK RMQEVYNFNA ENSBTAP00000021833/1-611 KDDDLNSFSS ADLKDFSSHQ VNEFLAQMLQ NAPLPLGHIK RMQEVYNFNA ENSTTRP00000005746/1-610 KEDDLNSFSS ADLKDFSSHQ VNEFLAQMLQ KAPLPLGHIK RMQEVYNFNA bmy_13868T0/1-603 KEDDLNSFSS ADLKDFSSHQ VNEFLAQMLQ KAPLPLGHIK RMQEVYNFNA BACU000953/1-611 KEDDLNSFSS ADLKDFSSHQ VNEFLAQMLQ KAPLPLGHIK RMQEVYNFNA 551 600 ENSP00000228740/1-611 INNSEIRFRW LRLCIQSKWE DAIPLALKMA TEQGRMKFTR PLFKDLAAFD ENSBTAP00000021833/1-611 INNSEIRFRW LRLCIQSKWE EAIPLALKMA TEQGRMKFTR PLFKDLAAFD ENSTTRP00000005746/1-610 INNSEIRFRW LRLCIQSKWE EAIPLALKMA TEQGRMKFTR PLFKDLAAFD bmy_13868T0/1-603 INNSEIRFRW LRLCIQSKWE EAIPLALKMV TEQGRMKFTR PLFKDLAAFD BACU000953/1-611 INNSEIRFRW LRLCIQSKWE EAIPLALKMA TEQGRMKFTR PLFKDLAAFD 601 650 ENSP00000228740/1-611 KSHDQAVRTY QEHKASMHPV TAMLVGKDLK VD ENSBTAP00000021833/1-611 KSHDQAIRTY KEHKASMHPV TAMLVGKDLK VD ENSTTRP00000005746/1-610 KSHDQAIRTY QEHKACMHPV TAMLVGKDLK VD bmy_13868T0/1-603 KSHDQAIRTY QEHKACMHPV TAMLVGKDLK VD BACU000953/1-611 KSHDQAIRTY QEHKACMHPV TAMLVGKDLK VD