KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:35 2014 Check: 00 .. Name: ENSTTRP00000012238/1-889 Len: 1059 Check: 8178 Weight: 1.00 Name: ENSP00000231188/1-877 Len: 1059 Check: 3392 Weight: 1.00 Name: ENSBTAP00000021547/1-879 Len: 1059 Check: 6663 Weight: 1.00 Name: bmy_03340T0/1-870 Len: 1059 Check: 8405 Weight: 1.00 Name: BACU002922/1-806 Len: 1059 Check: 5317 Weight: 1.00 // 1 50 ENSTTRP00000012238/1-889 PDLPS----- -------WPL FV-------- ---------- ---------- ENSP00000231188/1-877 MARPRRAREP L--LVALLPL AW-LAQAGLA RAAGSVRLAG GLTLGGLFPV ENSBTAP00000021547/1-879 PRPPPAAPEP MAGVPALLPL LLALAQAGVV GAAGSVRLAG GLTLGGLFPV bmy_03340T0/1-870 ---------- MAGVLALLPL LLALAQAGVA GAAGSVRLAG GLTLGGLFPV BACU002922/1-806 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012238/1-889 ---------- ---------- ---------- AVPACPQL-P NVPVLGPHCP ENSP00000231188/1-877 HARGAAGRAC GQLKKEQGVH RLEAMLYALD RVNADPELLP GVRLGARLLD ENSBTAP00000021547/1-879 HARGAAGRAC GQLKKEQGVH RLEAMLYALD RVNADPELLP GVRLGARLLD bmy_03340T0/1-870 HARGAAGRAC GPLKKEQGVH RLEAMLYALD RVNADPELLP GVRLGARLLD BACU002922/1-806 ---------- ---------- ----MLYALD RVNADPELLP GVRLGARLLD 101 150 ENSTTRP00000012238/1-889 PCL------- ---------- -----GSLTS IHSPGVLP-- ---------- ENSP00000231188/1-877 TCSRDTYALE QALSFVQALI RGRGDGDEVG VRCPGGVPPL RPAPPERVVA ENSBTAP00000021547/1-879 TCSRDTYALE QALSFVQALI RGR-DGEEAA VRCPGGVPPL RTAPPERVVA bmy_03340T0/1-870 TCSRDTYALE QALSFVQALI RGRSDGDEAA VRCPGGVPPM RAAPPERVVA BACU002922/1-806 TCSRDTYALE QALSFVQALI RGRSDGDEAA VRCPGGVPPM RAAPPERVVA 151 200 ENSTTRP00000012238/1-889 ---------- ---------L QIPQISYAST APELSDSTRY DFFSRVVPPD ENSP00000231188/1-877 VVGASASSVS IMVANVLRLF AIPQISYAST APELSDSTRY DFFSRVVPPD ENSBTAP00000021547/1-879 VVGASASSVS IMVANVLRLF AIPQISYAST APELSDSTRY DFFSRVVPPD bmy_03340T0/1-870 VVGASASSVS IMVANVLRLF AIPQISYAST APELSDSTRY DFFSRVVPPD BACU002922/1-806 VVGASASSVS IMVANVLRLF AIPQISYAST APELSDSTRY DFFSRVVPPD 201 250 ENSTTRP00000012238/1-889 SYQAQAMVDI VRALGWNYVS TLASEGNYGE SGVDAFVQIS REAGELGALR ENSP00000231188/1-877 SYQAQAMVDI VRALGWNYVS TLASEGNYGE SGVEAFVQIS REAG------ ENSBTAP00000021547/1-879 SYQAQAMVDI VRALGWNYVS TLASEGNYGE SGVEAFVQIS REAG------ bmy_03340T0/1-870 SYQAQAMVDI VRALGWNYVS TLASEGNYGE SGVDAFVQIS REAG------ BACU002922/1-806 SYQAQAMVDI VRALGWNYVS TLASEGNYGE SGVDAFVQIS REAG------ 251 300 ENSTTRP00000012238/1-889 HEGPYRVCWT GHKQGRAGFM MGSLDGAPCG GPLEDSALPQ AVVVALSIKI ENSP00000231188/1-877 ---------- ---------- ---------- ---------- GVCIAQSIKI ENSBTAP00000021547/1-879 ---------- ---------- ---------- ---------- GVCIAQSIKI bmy_03340T0/1-870 ---------- ---------- ---------- ---------- GVCIAQSIKI BACU002922/1-806 ---------- ---------- ---------- ---------- GVCIAQSIKI 301 350 ENSTTRP00000012238/1-889 PREPKPGEFN KVIRRLMETP NARGIIIFAN EDDISPILTR RVLEAARQAN ENSP00000231188/1-877 PREPKPGEFS KVIRRLMETP NARGIIIFAN EDDI-----R RVLEAARQAN ENSBTAP00000021547/1-879 PREPKPGEFN KVIKRLMETP NARGIIIFAN EDDI-----R RVLEAARQAN bmy_03340T0/1-870 PREPKPGEFN KVIRRLMETP NARGIIIFAN EDDI-----R RVLEAARQAN BACU002922/1-806 PREPKPGEFN KVIRRLMETP NARGIIIFAN EDDI-----R RVLEAARQAN 351 400 ENSTTRP00000012238/1-889 LTSYFLWVGS DSWGAKISPI LNLEDVAVGA ITILPKRASI DGFDQYFMTR ENSP00000231188/1-877 LTGHFLWVGS DSWGAKTSPI LSLEDVAVGA ITILPKRASI DGFDQYFMTR ENSBTAP00000021547/1-879 LTGHFLWVGS DSWGAKISPV LNLEDVAVGA ITILPKRASI DGFDQYFMTR bmy_03340T0/1-870 LTSYFLWVGS DSWGAKISPI LNLEDVAVGA ITILPKRASI DGFDQYFMTR BACU002922/1-806 LTSYFLWVGS DSWGAKISPI LNLEDVAVGA ITILPKRASI DGFDQYFMTR 401 450 ENSTTRP00000012238/1-889 SLENNRRNIW FAEFWEE-FN CKLXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000231188/1-877 SLENNRRNIW FAEFWEENFN CKL------- -TSSGTQSDD STRKCTGEER ENSBTAP00000021547/1-879 SLENNRRNIW FAEFWEENFN CKL------- -TSSGTQSDD STRKCTGEER bmy_03340T0/1-870 SLENNRRNIW FAEFWEENFN CKL------- -TSSGTQSDD STRKCTGEER BACU002922/1-806 SLENNRRNIW FAEFWEENFN CKL------- -TSSGTQSDD STRKCTGEER 451 500 ENSTTRP00000012238/1-889 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG LCPAMEP-DG ENSP00000231188/1-877 IGRDSTYEQE GKVQFVIDAV YAIAHALHSM HQALCPGHTG LCPAMEPTDG ENSBTAP00000021547/1-879 IGRDSAYEQE GKVQFVIDAV YAIAHALHSM HQALCPGHTG LCPAMEPTDG bmy_03340T0/1-870 IGRDSAYEQE GKVQFVIDAV YAIAHALHSM HQALCPGHTG LCPAMEPTDG BACU002922/1-806 IGRDSAYEQE GKVQFVIDAV YAIAHALHSM HQALCPGHTG LCPAMEPTDG 501 550 ENSTTRP00000012238/1-889 RTLLQYIRCT FQWLNNIPLY VTQFAYPFIR WTLAFLPHFS YVNAAVNISV ENSP00000231188/1-877 RMLLQYIRA- ---------- ---------- ---------- ---------- ENSBTAP00000021547/1-879 RTLLQYIRA- ---------- ---------- ---------- ---------- bmy_03340T0/1-870 RTLLQYIRA- ---------- ---------- ---------- ---------- BACU002922/1-806 RTLLQYIRA- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000012238/1-889 QISLESLLSI ILGILEKELL DCVVILFNFL RNHHIIFHTD CIIFPPVKYG ENSP00000231188/1-877 ---------- ---------- ----VRFN-- ---------- ---------G ENSBTAP00000021547/1-879 ---------- ---------- ----VRFN-- ---------- ---------G bmy_03340T0/1-870 ---------- ---------- ----VRFN-- ---------- ---------G BACU002922/1-806 ---------- ---------- ----VRFN-- ---------- ---------G 601 650 ENSTTRP00000012238/1-889 SAGTPVMFNE NGDAPGRYDI FQYQVTNGSA GSGSYQAVGQ WAETLRLDVS ENSP00000231188/1-877 SAGTPVMFNE NGDAPGRYDI FQYQATNGSA SSGGYQAVGQ WAETLRLD-- ENSBTAP00000021547/1-879 SAGTPVMFNE NGDAPGRYDI FQYQATNGSA GSGSYQAVGQ WAETLRLD-- bmy_03340T0/1-870 SAGTPVMFNE NGDAPGRYDI FQYQVTNGSA GSGSYQAVGQ WAETLRLD-- BACU002922/1-806 SAGTPVMFNE NGDAPGRYDI FQYQVTNGSA GSGSYQAVGQ WAETLRLD-- 651 700 ENSTTRP00000012238/1-889 ARDELWAEAD PPSWGWESQV PVSPVSQVEA LQWSGDPREV PESQCSLPCG ENSP00000231188/1-877 ---------- ---------- -------VEA LQWSGDPHEV PSSLCSLPCG ENSBTAP00000021547/1-879 ---------- ---------- -------VEA LQWSGDPREV PESLCSLPCG bmy_03340T0/1-870 ---------- ---------- -------VEA LQWSGDPREV PESQCSLPCG BACU002922/1-806 ---------- ---------- -------VEA LQWSGDPREV PESQCSLPCG 701 750 ENSTTRP00000012238/1-889 PGERKKMVKG VPCCWHCEAC DGYRFQVDEF TCEACPGDMR PTHNHTGCRP ENSP00000231188/1-877 PGERKKMVKG VPCCWHCEAC DGYRFQVDEF TCEACPGDMR PTPNHTGCRP ENSBTAP00000021547/1-879 PGERKKMVKG VPCCWHCEAC DGYRFQVDEF TCEACPGHMR PTRNHTGCRP bmy_03340T0/1-870 PGERKKMVKG VPCCWHCEAC DGYRFQVDEF TCEACPRDMR PTRNHTGCRP BACU002922/1-806 PGERKKMVKG VPCCWHCEAC DGYRFQVDEF TCEACPRDMR PTRNHTGCRP 751 800 ENSTTRP00000012238/1-889 TPVVRLSWSS PWAAPPLLLA VLGIMATTTV VATFVRHNNT PIVRASGREL ENSP00000231188/1-877 TPVVRLSWSS PWAAPPLLLA VLGIVATTTV VATFVRYNNT PIVRASGREL ENSBTAP00000021547/1-879 TPVVRLSWSS PWAAPPLLLA VLGIMATTTV VATFVRHNNT PIVRASGREL bmy_03340T0/1-870 TPVVRLSWSS PWAAPPLLLA VLGIMATTTV VATFVRHNNT PIVRASGREL BACU002922/1-806 TPVVRLSWSS PWAAPPLLLA VLGIMATTTV VATFVRHNNT PIVRASGREL 801 850 ENSTTRP00000012238/1-889 SYVLLTGIFL IYTVTFLMVA EPGAAVCAAR RLFLGLGTTL SYSALLTKTN ENSP00000231188/1-877 SYVLLTGIFL IYAITFLMVA EPGAAVCAAR RLFLGLGTTL SYSALLTKTN ENSBTAP00000021547/1-879 SYVLLTGIFL IYAITFLMVA EPGAAVCATR RLFLGLGTSL SYSALLTKTN bmy_03340T0/1-870 SYVLLTGIFL IYTVTFLMVA EPGAAVCAAR RLFLGLGTTL SYSALLTKTN BACU002922/1-806 SYVLLTGIFL IYTVTFLMVA EPGAAVCAAR RLFLGLGTTL SYSALLTKTN 851 900 ENSTTRP00000012238/1-889 RIYRIFEQGK RSVTPPPFIS PTSQLVITFS FTSVQ----- -YFSVKHLSA ENSP00000231188/1-877 RIYRIFEQGK RSVTPPPFIS PTSQLVITFS LTSLQVVGMI AWLGARPPHS ENSBTAP00000021547/1-879 RIYRIFEQGK RSVTPPPFIS PTSQLVITFS LTSVQVVGVL AWLGAQPPHS bmy_03340T0/1-870 RIYRIFEQGK RSVTPPPFIS PTSQLVITFS FTSVQVVGVM AWLGAQPPHS BACU002922/1-806 RIYRIFEQGK RSVTPPPFIS PTSQLVITFS FTSVQVVGVM AWLGAQPPHS 901 950 ENSTTRP00000012238/1-889 SVSLGMLYEV ESEPWN---- ---------- YLGEGVWMLR TA-----HNP ENSP00000231188/1-877 VIDYEEQRTV DPEQARGVLK CDMSDLSLIG CLGYSLLLMV TCTVYAIKAR ENSBTAP00000021547/1-879 VIDYEEQRTV DPEQARGVLK CDMSDLSLIG CLGYSLLLMV TCTVYAIKAR bmy_03340T0/1-870 VIDYEEQRTV EPEQARGVLK CDMSDLSLVG CLGYSLLLMV TCTVYAIKAR BACU002922/1-806 VIDYEEQRTV EPEQAKGVLK CDMSDLSLVG CLGYSLLLMV TCTVYAIKAR 951 1000 ENSTTRP00000012238/1-889 GVSQT----- ---------- VVHLVMV--- YSKTRKA-RL HMLVKPAAGA ENSP00000231188/1-877 GVPETFNEAK PIGFTMYTTC IIWLAFVPIF FGTAQSAEKI YIQTTTLTVS ENSBTAP00000021547/1-879 GVPETFNEAK PIGFTMYTTC IIWLAFVPIF FGTAQSAEKI YIQTTTLTVS bmy_03340T0/1-870 GVPETFNEAK PIGFTMYTTC IIWLAFVPIF FGTAQSAEKI YIQTTTLTVS BACU002922/1-806 GVPETFNEAK PIGFTMYTTC IIWLAFVPIF FGTAQSAEKI YIQTTTLTVS 1001 1050 ENSTTRP00000012238/1-889 ATGMVAEGLG LSPNASTFQG AAALMRVLQM GKATNKVSEI CSLGIQGLLT ENSP00000231188/1-877 LSLSASVSLG MLYVPKTYVI LFHPEQNVQK RKRSLKATST VAAPPKGEDA ENSBTAP00000021547/1-879 LSLSASVSLG MLYVPKTYVI LFHPEQNVQK RKRSLKTTST VAAPPKGEDS bmy_03340T0/1-870 LSLSASVSLG MLYVPKTYVI LFHPEQNVQK RKRSLKTTST VAAPPKGEGT BACU002922/1-806 LSLSASVSLG MLYVPKTYVI LFHPEQNVQK RKRSLKTTST VAAPPKGEDT 1051 1100 ENSTTRP00000012238/1-889 SVNSLVMDE ENSP00000231188/1-877 EAHK----- ENSBTAP00000021547/1-879 EAPS----- bmy_03340T0/1-870 EAPK----- BACU002922/1-806 EAPK-----