KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:14:23 2014 Check: 00 .. Name: ENSP00000307746/1-1512 Len: 1521 Check: 7060 Weight: 1.00 Name: bmy_14181T0/1-1141 Len: 1521 Check: 6512 Weight: 1.00 Name: ENSBTAP00000021480/1-1512 Len: 1521 Check: 3697 Weight: 1.00 Name: BACU013034/1-637 Len: 1521 Check: 9202 Weight: 1.00 Name: ENSTTRP00000008048/1-1511 Len: 1521 Check: 6599 Weight: 1.00 // 1 50 ENSP00000307746/1-1512 MSVNISTAGK GVDPNTVDTY DSGDDWEIGV GNLIIDLDAD LEKDRQKFEM bmy_14181T0/1-1141 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021480/1-1512 MSVNISTAGK GVDPNTVDTY DSGDDWEIGV GNLIIDLDAD LEKDRQKFEM BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 MSVNISTAGK GVDPNTVDTY DSGDDWEIGV GNLIIDLDAD LEKDRQKFEM 51 100 ENSP00000307746/1-1512 NNSTTTTSSS NSKDCGGPAS SGAGATAALA DGLKFASVQA SAPQGNSHKE bmy_14181T0/1-1141 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021480/1-1512 NNSTNTTSSG NSKDCGGLAS SGAGAPAALA DGLKFASVQP SAPQGNSHKE BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 NNSTNTTSSS NSKDCGGLAS SGAGATAALA DGLKFASVQP SAPQGNSHKE 101 150 ENSP00000307746/1-1512 TSKSKVKRSK TSKDANKSLP SAALYGIPEI SSTGKRQEVQ GRPGEATGMN bmy_14181T0/1-1141 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021480/1-1512 TSKSKVKRSK TSKDANKSLP SAALYGIPEI SGTGKRQEVQ GRPGEATGMN BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 TSKSKVKRSK TSKDANKSLP SAALYGIPEI SGTGKRQEVQ GRPGEATGMN 151 200 ENSP00000307746/1-1512 SALGQSVS-- SGGSGNPNSN STSTSTSAAT AGAGSCGKSK EEKPGKSQSS bmy_14181T0/1-1141 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021480/1-1512 SALGQSVSGG GGGGGNPNSN STSTGTSAAT AGAASCGKSK EEKPGKSQSS BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 SALGQSVS-- GGGGGNPNSN STSAGTSAAT AGTASCGKSK EEKPGKSQSS 201 250 ENSP00000307746/1-1512 RGAKRDKDAG KSRKDKHDLL QGHQNGSGSQ APSGGHLYGF GAKSNGGGAS bmy_14181T0/1-1141 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021480/1-1512 RGAKRDKDAG KSRKDKHDLL QGHQNGSGSQ APSGGHLYGF GAKSNGGGAS BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 RGAKRDKDAG KSRKDKHDLL QGHQNGSGSQ APSGG-LYGF GAKSNGGGAS 251 300 ENSP00000307746/1-1512 PFHCGGTGSG SVAAAGEVSK SAPDSGLMGN SMLVKKEEEE EESHRRIKKL bmy_14181T0/1-1141 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021480/1-1512 PFHCGGTGSG SVTAAGEVSK SAPDSGLMGN SMLVKKEEEE EESHRRIKKL BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 PFHCGGTGSG SVAAAGEVSK SAPDSGLMGN SMLVKKEEEE EESHRRIKKL 301 350 ENSP00000307746/1-1512 KTEKVDPLFT VPAPPPPISS SLTPQILPSY FSPSSSNIAA PVEQLLVRTR bmy_14181T0/1-1141 ---------- ------VICA NLGPSSFP-- ---------- ---------- ENSBTAP00000021480/1-1512 KTEKVDPLFT VPAPPPPIAS SLTPQLLPSY FSPSSSNIAA PVEQLLVRTR BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 KTEKVDPLFT VPAPPPPISS SLTPQILPSY FSPSSSNIAA PVEQLLVRTR 351 400 ENSP00000307746/1-1512 SVGVNTCEVG VVTEPECLGP CEPGTSVNLE GIVWHETEEG VLVVNVTWRN bmy_14181T0/1-1141 ---------- ---------- ---------- ------TPAG VLVVNVTWRN ENSBTAP00000021480/1-1512 SVGVNTCEVG VVTEPECLGP CEPGTSVNLE GIVWHETEEG VLVVNVTWRN BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 SVGVNTCEVG VVTEPECLGP CEPGTSVNLE GIVWHETEEG VLVVNVTWRN 401 450 ENSP00000307746/1-1512 KTYVGTLLDC TKHDWAPPRF CESPTSDLEM RGGRGRGKRA RSAAAAPGSE bmy_14181T0/1-1141 KTYVGTLLDC TKHDWAPPRF CESPTSDLEM RGGRGRGKRA RSTAAAPGSE ENSBTAP00000021480/1-1512 KTYVGTLLDC TKHDWAPPRF CESPTSDLEM RGGRGRGKRA RSTAAAPGSE BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 KTYVGTLLDC TKHDWAPPRF CESPTSDLEM RGGRGRGKRA RSTAAAPGSE 451 500 ENSP00000307746/1-1512 ASFTESRGLQ NKNRGGANGK GRRGSLNASG RRTPPNCAAE DIKASPSSTN bmy_14181T0/1-1141 ASFTESRGLQ NKNRGGANGK GRRGSLNASG RRTPPNCAAE DIKASPSSTN ENSBTAP00000021480/1-1512 ASFTESRGLQ NKNRGGANGK GRRGSLNASG RRTPPNCAAE DIKASPSSTN BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 ASFTESRGLQ NKNRGGANGK GRRGSLNASG RRTPPNCAAE DIKASPSSTN 501 550 ENSP00000307746/1-1512 KRKNKPPMEL DLNSSSEDNK PGKRVRTNSR STPTTPQGKP ETTFLDQGCS bmy_14181T0/1-1141 KRKNKPPMEL DLNSSSEDNK PGKRVRTNSR STPTTPQGKP ETTFLDQGCS ENSBTAP00000021480/1-1512 KRKNKPPMEL DLNSSSEDSK PGKRVRTNSR STPTTPQGKP ETTFLDQGCS BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 KRKNKPPMEL DLNSSSEDSK PGKRVRTNSR STPTTPQGKP ETTFLDQGCS 551 600 ENSP00000307746/1-1512 SPVLIDCPHP NCNKKYKHIN GLRYHQAHAH LDPENKLEFE PDSEDKISDC bmy_14181T0/1-1141 SPVLIDCPHP NCNKKYKHIN GLRYHQAHAH LDPENKLEFE PDSEGKISDC ENSBTAP00000021480/1-1512 SPVLIDCPHP NCNKKYKHIN GLRYHQAHAH LDPENKLEFE PDSEDKISDC BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 SPVLIDCPHP NCNKKYKHIN GLRYHQAHAH LDPENKLEFE PDSEGKISDC 601 650 ENSP00000307746/1-1512 EEGLSNVALE CSEPSTSVSA YDQLKAPASP GAGNPPGTPK GKRELMSNGP bmy_14181T0/1-1141 EEALSNVALE CSEPSTSVST YEQVKAPVSP GSGNPPGTPK GKRELMSNGP ENSBTAP00000021480/1-1512 EEALSNVALE CSEPSTSVST YEQVKAPVSP GSGNPPGTPK GKRELLSNGP BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 EEALSNVALE CSEPSTSVST YEQVKAPVSP GSGNPPGTPK GKRELMSNGP 651 700 ENSP00000307746/1-1512 GSIIGAKAGK NSGKKKGLNN ELNNLPVISN MTAALDSCSA ADGSLAAEMP bmy_14181T0/1-1141 GSVIGSKPGK NSGKKKGLNS DLSNLPVISN MTATVDSCSA ADGSLAAEMP ENSBTAP00000021480/1-1512 GSVIGAKAGK NSGKKKGLNN DLNNLPVISN MTATLDSCSA VDGSLTVEMP BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 GSVIGSKPGK NSGKKKGLNS DLNNLPVISN MTATVDSCSA ADGSSAAEMP 701 750 ENSP00000307746/1-1512 KLEAEGLIDK KNLGDKEKGK KATNCKTDKN LSKLKSARPI APAPAPTPPQ bmy_14181T0/1-1141 KLEAEGLIDK KTLGEKEKGK KANSCKMDKN LSKLKSARPI APAPAPTPPQ ENSBTAP00000021480/1-1512 KLEAEGLIDK KTLGEKEKGK KANNCKMDKN LSKLKTARPI APAPAPTPPQ BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 KLEAEGLIDK KNLGEKEKGK KANSCKMDKN LSKLKSARPI APAPAPTPPQ 751 800 ENSP00000307746/1-1512 LIAIPTATFT TTTTGTIPGL PSLTTTVVQA TPKSPPLKPI QPKPTIMGEP bmy_14181T0/1-1141 LIAIPTAAFT GTTTGTIPGL PSLTTTAVQA TPKSPPLKPI QPKPTIMGEP ENSBTAP00000021480/1-1512 LIAIPTAAFP STTTGTIPGL ----TTVVQA TPKSPPLKPI QPKPTIMGEP BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 LIAIPTAAFT GTTTGTIPGL PSLTTTAVQA TPKSPPLKPI QPKPTIMGEP 801 850 ENSP00000307746/1-1512 ITVNPALVSL KDKKKKEKRK LKDKEGKETG SPKMDAKLGK LEDSKGASKD bmy_14181T0/1-1141 VTVNPALVSL KDKKKKEKRK LKDKEGKETG SPKTDAKLVK LEDAKGAGRD ENSBTAP00000021480/1-1512 ITVNPALVSL KDKKKKEKRK LKDKEGKETG SPKMDAKLGK LEDAKGTGKD BACU013034/1-637 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008048/1-1511 VTVNPALVSL KDKKKKEKRK LKDKEGKETG SPKTDAKLGK LEDAKGAGRD 851 900 ENSP00000307746/1-1512 LPGHFLKDHL NKNEGLANGL SESQESRMAS IKAEADKVYT FTDNAPSPSI bmy_14181T0/1-1141 VSGHFLKDHL NKNEGLANGL SESQESRMAS IKAEADKVYT FTDNAPSPSI ENSBTAP00000021480/1-1512 LSGHFLKDHL SKNEGLANGL SESQESRMAS IKAEADKVYT FTDNAPSPSI BACU013034/1-637 ---------- ---------- -------MAS IKAEADKVYT FTDNAPSPSI ENSTTRP00000008048/1-1511 VSGHFLKDHL NKNEGLANGL SESQESRMAS IKAEADKVYT FTDNAPSPSI 901 950 ENSP00000307746/1-1512 GSASRLECST LVNGQAPMAP LHVLTQNGAE SSAAKTSSPA YSDISDAADD bmy_14181T0/1-1141 GSASRMECSA LVNGQAPVAP LHVLTQNGAE SSAAKTSSPA YSDISDAADD ENSBTAP00000021480/1-1512 GSASRMECST LVNGQAPMAP LHVLTQNGAE SSAAKTSSPA YSDISDAADD BACU013034/1-637 GSASRMECSA LVNGQAPVAP LHVLTQNGAE SSAAKTSSPA YSDISDAADD ENSTTRP00000008048/1-1511 GSASRMECSA LVNGQVPVAP LHVLTQNGAE SSAAKTSSPA YSDISDAADD 951 1000 ENSP00000307746/1-1512 GGSDSRSEGM RSKASSPSDI ISSKDSVVKG HSSTTAQSSQ LKESHSPYYH bmy_14181T0/1-1141 GGSDSRSEGV RSKASSPSDI LSSKDGVVKG HSSTTAQSSQ MKESHSPYYH ENSBTAP00000021480/1-1512 GGSDSRSEGV RSKTSSPSDI LSSKDGSVKG HSSTTAQSSQ MKESHSPYYH BACU013034/1-637 GGSDSRSEGV RSKASSPSDI LSSKDGVVKG HSSTTAQSSQ MKESHSPYYH ENSTTRP00000008048/1-1511 GGSDSRSEGV RSKASSPSDI LSSKDGVVKG HSSTTAQSSQ MKESHSPYYH 1001 1050 ENSP00000307746/1-1512 SYDPYYSPSY MHPGQVGAPA AGNSGSTQGM KIKKESEEDA EKKDKAEQLD bmy_14181T0/1-1141 GYDPYYSPSY MHPGQVGASV AGNGGSAQGM KIKKESEEDA EKKDKAEQLE ENSBTAP00000021480/1-1512 GYDPYYSPSY MHPGQMGASV AGNGGSTQGM KIKKESEEEA DKKDKAEQLE BACU013034/1-637 GYDPYYSPSY MHPGQVGAPV AGNGGSAQGM KIKKESEEDA EKKDKAEQLE ENSTTRP00000008048/1-1511 GYDPYYSPSY MHPGQVGAPV AGNGGSAQGM KIKKESEEDA DKKDKAEQLE 1051 1100 ENSP00000307746/1-1512 SKKVDHNSAS LQPQHQSVIT QRHPALAQSL YYGQYAYGLY MDQKSLMATS bmy_14181T0/1-1141 AKKVDHNSAS LQPQHQSVIT QRHPALAQSL YYGQYAYGLY MDQKSLMATS ENSBTAP00000021480/1-1512 AKKVDHNPAS LQPQHQSVIT QRHPALAQSL FYGQYAYGLY MDQKSLMATS BACU013034/1-637 AKKVDHNSAS IQPQHQSVIT QRHPALAQSL YYGQYAYGLY MDQKSLMATS ENSTTRP00000008048/1-1511 AKKVDHNSAS LQPQHQSVIT QRHPALAQSL YYGQYAYGLY MDQKSLMATS 1101 1150 ENSP00000307746/1-1512 PAYRQQYEKY YEDQRLAEQK MAQTGRGDCE RKSELPLKEL GKEETKQKNM bmy_14181T0/1-1141 PAYRQQYEKY YEDQRLAEQK MAQTGRGDCE RKNELPLKEL GKEDSKQKNM ENSBTAP00000021480/1-1512 PAYRQQYEKY YEDQRLAEQK MAQTGRGDCE RKNELPLKEL GKEDSKQKNM BACU013034/1-637 PAYRQQYEKY YEDQRLAEQK MAQTGRGDCE RKNELPLKEL GKEDSKQKNM ENSTTRP00000008048/1-1511 PAYRQQYEKY YEDQRLAEQK MAQTGRGDCE RKNELPLKEL GKEDSKQKNM 1151 1200 ENSP00000307746/1-1512 PSATISKAPS TPEPNKNHSK LGPSVPNKTE ETGKSQLLSN HQQQLQADSF bmy_14181T0/1-1141 PSATISKAPS TPEPNKNHSK LGPSVPNKSE ETGKSQLLSN HQQQLQADSF ENSBTAP00000021480/1-1512 PSATVSKAPS TPEPNKNHSK LGPSVPNKTE ETGKSQLLSS HQQQLQADSF BACU013034/1-637 PSATISKAPS TPEPNKNHSK LGPSVPNKSE ETGKSQLLSN HQQQLQADSF ENSTTRP00000008048/1-1511 PSATISKAPS TPEPNKNHSK LGPSVPNKSE ETGKSQLLSN HQQQLQADSF 1201 1250 ENSP00000307746/1-1512 KAKQMENHQL IKEAVEMKSV MDSMKQTGVD PTSRFK--QD PDSRTWHHYV bmy_14181T0/1-1141 KAKQMENHQL IKEAVEMKSV MDSMKQTGVD PTSRFK--QD PDSRTWHHYV ENSBTAP00000021480/1-1512 KAKQMENHQL IKEAVEMKSV MDSMKQTGVD PTSRFKQNQD PDTRTWHHYV BACU013034/1-637 KAKQMENHQL IKEAVEMKSV MDSMKQTGVD PTSRFK--QD PDSRTWHHYV ENSTTRP00000008048/1-1511 KAKQMENHQL IKEAVEMKSV MDSMKQTGVD PTSRFK--QD PDSRTWHHYV 1251 1300 ENSP00000307746/1-1512 YQPKYLDQQK SEELDREKKL KEDSPRKTPN KESGVPSLPV SLTSIKEEPK bmy_14181T0/1-1141 YQPKYLDPQK SEELDREKKL KEDSPRKTPT KEGGVPSLPV SLTSIKEEPK ENSBTAP00000021480/1-1512 YQPKYLDPQK SEELDREKKL KEDSPRKTPN KESGVPSLPV SLTSIKEEPK BACU013034/1-637 YQPKYLDPQK SEELDREKKL KEDSPRKTPT KEGGVPSLPV SLTSIKEEPK ENSTTRP00000008048/1-1511 YQPKYLDPQK SEELDREKKL KEDSPRKTPN KEGGVPSLPV SLTSIKEEPK 1301 1350 ENSP00000307746/1-1512 EAKHPDSQSM EESKLKNDDR KTPVNWKDSR GTRVAVSSPM SQHQSYIQYL bmy_14181T0/1-1141 EAKRPDSQSL DESKLKNDDR KTPVSWKDSR GARVAVSSPM SQHQSYIQYL ENSBTAP00000021480/1-1512 EAKRPDSQSL DEGKLKNDDR KTPVNWKDSR GTRVAVSSPM SQHQSYIQYL BACU013034/1-637 EAKRPDSQSL DESKLKNDDR KTPVSWKDSR GARVAVSSPM SQHQSYIQYL ENSTTRP00000008048/1-1511 EAKRPDSQSL DESKLKNDDR KTPVNWKDSR GARVAVSSPM SQHQSYIQYL 1351 1400 ENSP00000307746/1-1512 HAYPYPQMYD PSHPAYRAVS PVLMHSYPGA YLSPGFHYPV YGKMSGREET bmy_14181T0/1-1141 HAYPYPQMYD PSHPAYRAVS PVLMHSYPGA YLSPGFHYPV YGKMSGREEA ENSBTAP00000021480/1-1512 HAYPYPQMYD PSHPAYRAVS PVLMHSYPGA YLSPGFHYPV YGKMSGREEA BACU013034/1-637 HAYPYPQMYD PSHPAYRAVS PVLMHSYPGA YLSPGFHYPV YGKMSGREEA ENSTTRP00000008048/1-1511 HAYPYPQMYD PSHPAYRAVS PVLMHSYPGA YLSPGFHYPV YGKMSGREEA 1401 1450 ENSP00000307746/1-1512 EKVNTSPSVN TKTTTESKAL DLLQQHANQY RSKSPAPVEK ATAEREREAE bmy_14181T0/1-1141 EKVNTSPSIT TKTTTESKAL DLLHQHASQY RSKSPAPVEK ASAEREREAE ENSBTAP00000021480/1-1512 EKVNTSPSIN TKTATESKAL DLLQQHANQY RSKSPAPVEK ASAEREREAE BACU013034/1-637 EKVNTSPSIT TKTTTESKAL DLLHQHASQY RSKSPAPVEK ASAEREREAE ENSTTRP00000008048/1-1511 EKVNTSPSIT TKTTTESKAL DLLHQHASQY RSKSPAPVEK SSAEREREAE 1451 1500 ENSP00000307746/1-1512 RERDRHSPFG QRHLHTHHHT HVGMGYPLIP GQYDPFQ--- --GLTSAALV bmy_14181T0/1-1141 RERDRHSPFG QRHLHTHHHT HVGMGYPLIP GQYDPFQENN KIGNVRCHVT ENSBTAP00000021480/1-1512 RERDRHSPFG QRHLHTHHHT HVGMGYPLIP GQYDPFQ--- --GLTSAALV BACU013034/1-637 RERDRHSPFG QRHLHTHHHT HVGMGYPLIP GQYDPFQ--- --GLTSAALV ENSTTRP00000008048/1-1511 RERDRHSPFG QRHLHTHHHT HVGMGYPLIP GQYDPFQ--- --GLTSAALV 1501 1550 ENSP00000307746/1-1512 ASQQVAAQAS ASGMFPGQRR E bmy_14181T0/1-1141 GSHGEALYTD ISSMVLI--- - ENSBTAP00000021480/1-1512 ASQQVAAQAS ASGMFPAQRR E BACU013034/1-637 ASQQVAAQAS ASGMFPAQRR E ENSTTRP00000008048/1-1511 ASQQVAAQAS ASGMFPAQRR E