KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:13:39 2014 Check: 00 .. Name: ENSTTRP00000003627/1-575 Len: 664 Check: 5746 Weight: 1.00 Name: bmy_14307T0/1-371 Len: 664 Check: 4518 Weight: 1.00 Name: BACU004277/1-461 Len: 664 Check: 8995 Weight: 1.00 Name: ENSP00000320646/1-576 Len: 664 Check: 3812 Weight: 1.00 Name: ENSBTAP00000021234/1-586 Len: 664 Check: 8281 Weight: 1.00 // 1 50 ENSTTRP00000003627/1-575 ---------- ---------- ---------- ---------- ---------- bmy_14307T0/1-371 MGAVNTQPPV PRGRDDRSWG TFAPGTRGAV PRRGTRLGAG RGVRAQPRFR BACU004277/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000320646/1-576 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000021234/1-586 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000003627/1-575 ---------- ---------- ------TLPR VVMSLRRLAW AL--ACWWPD bmy_14307T0/1-371 FRFRPGKEEE REPGLRRYQQ LASAAAMLPR VGMSLRRLAW AWPGPCWWPV BACU004277/1-461 ---------- ---------- ------MLPR VGMSLRRLAW AWPGPCWWPA ENSP00000320646/1-576 ---------- ---------- ------MLPH VVLTFRRLGC AL-ASCRL-A ENSBTAP00000021234/1-586 ---------- ---------- -----MPLPY VGMALRRLAW AV-ASCRL-A 101 150 ENSTTRP00000003627/1-575 LRRCRGRGAL HTAPAARSDS STLGFRRALG FGDRIALVDQ HGSHTYKDLY bmy_14307T0/1-371 PRRCRRRGAL HTAPATRSDS SALGFHRALG FGDRIALVDQ HGSHTYKDLY BACU004277/1-461 PPRCRRRGAL HTAPAARSDS SALGFHRALG FGDRLALVDQ HGGHTYKDLY ENSP00000320646/1-576 PARHRGSGLL HTAPVARSDR SAPVFTRALA FGDRIALVDQ HGRHTYRELY ENSBTAP00000021234/1-586 PWTRGASGPL HSAPAARSDC SAPVFIRAPA FGDRLALIDQ HGRHTYKDLY 151 200 ENSTTRP00000003627/1-575 SRSLCLSREI CRLRGCADRD LREERVSLLC SNDVSFVVAQ WATWMSGGIA bmy_14307T0/1-371 SRSLCLSREI CRLRGRADGD LREERVSLLC SNDVSFVVAQ WATWMSGGIA BACU004277/1-461 SRSLCLSREI CRLRGRADGD LREERVSLLC GNDVSFVVAQ WATWMSGGIA ENSP00000320646/1-576 SRSLRLSQEI CRLCGCVGGD LREERVSFLC ANDASYVVAQ WASWMSGGVA ENSBTAP00000021234/1-586 LRSLRLSREI CQLRACADGD LREERVSLLC SNDVSFVVAQ WAAWMSGGVA 201 250 ENSTTRP00000003627/1-575 VPLCRKHPQA QLEYFIRDSR SSVVLAGPEH VELLSPVVQK LGVPLLPLPP bmy_14307T0/1-371 VPLCRKHPRA QLEYFIQDSR SSVVLAGPEH VALLSPVVQK LGVPLLPLPP BACU004277/1-461 VPLCRKHPRA QLEYFIQDSR SSVVLAGPEH VELLSPVVQK LGVPLLPLPP ENSP00000320646/1-576 VPLYRKHPAA QLEYVICDSQ SSVVLASQEY LELLSPVVRK LGVPLLPLTP ENSBTAP00000021234/1-586 VPLYRKHPRA QLEYFIQDSR SSVVLAGPEH VELLSPVAQK LGVPLLPLPP 251 300 ENSTTRP00000003627/1-575 AVYHGAAEDP GEGRLPEWDW RDRGAMIIYT SGTTGRPKGV LSTHQNIRAV bmy_14307T0/1-371 AVYHGAAEDP GEGRVPEWDW RDRGAMIIYT SGTTGRPKGV LSTHHNIRAV BACU004277/1-461 AVYHGATEDP GEGRVPEWDW RDRGAMIIYT SGTTGRPKGV LSTHHNIRAV ENSP00000320646/1-576 AIYTGAVEEP AEVPVPEQGW RNKGAMIIYT SGTTGRPKGV LSTHQNIRAV ENSBTAP00000021234/1-586 TVYHGVAEDP EEGLVLERNW RDRGAMIIYT SGTTGRPKGV LSTHDNIRAV 301 350 ENSTTRP00000003627/1-575 VTGLVRKWAW TKDDVILHVL PLHHVHGVVN KLLCPLWVGA TCVMLPEFSA bmy_14307T0/1-371 VTGLVRK--- ---------- ---------- ---------- ---------- BACU004277/1-461 VSAL------ ---------- ---------- ---------- ---------- ENSP00000320646/1-576 VTGLVHKWAW TKDDVILHVL PLHHVHGVVN ALLCPLWVGA TCVMMPEFSP ENSBTAP00000021234/1-586 VTGLVHKWAW TKDDVILHVL PLHHVHGVVN KLLCPLWVGA TCVMLPEFSA 351 400 ENSTTRP00000003627/1-575 QLVWEKFLSS DTPRINVFMA VPTIYSKLMD YYDKHFTHPH VQDFVRAVCE bmy_14307T0/1-371 ---------- ---------- ---------- ---------- ---------- BACU004277/1-461 ---------- ---------- ---------- ---------- ---------- ENSP00000320646/1-576 QQVWEKFLSS ETPRINVFMA VPTIYTKLME YYDRHFTQPH AQDFLRAVCE ENSBTAP00000021234/1-586 QLVWEKFLSS EAPQINVFMA VPTIYSKLMD YYDKHFTQPH VQDFVRAVCE 401 450 ENSTTRP00000003627/1-575 EKIRLMVSGS AALPLPVLEK WKGITGHTLL ERYGMTEIGM ALSNPLTAA- bmy_14307T0/1-371 ---------- ---------- ---------- ---------- ---------- BACU004277/1-461 ---------- ---------- -----GAASR EVYAVSQQAS PSSS------ ENSP00000320646/1-576 EKIRLMVSGS AALPLPVLEK WKNITGHTLL ERYGMTEIGM ALSGPLTTAV ENSBTAP00000021234/1-586 EKIRLMVSGS AALPLPVLEK WKGITGHTLL ERYGMTEIGM ALSNPLTAA- 451 500 ENSTTRP00000003627/1-575 RLPGSVGTPL PGVEVRIVSE NLQKDGYPYV VHAEGNEEDT KVTPGFEEKE bmy_14307T0/1-371 ---------- ---------- ---------- ---------- ---------- BACU004277/1-461 HGRCSVGTPL PGVEVRIVSE SLQKDGYPYV VHAEGNEEDT KVTPGFEEKE ENSP00000320646/1-576 RLPGSVGTPL PGVQVRIVSE NPQREACSYT IHAEGDERGT KVTPGFEEKE ENSBTAP00000021234/1-586 RLPGSVGTPL PGVEVRIVSE NPQKDSSPYL IHAEGSEENT KVTPGFEEKE 501 550 ENSTTRP00000003627/1-575 GELLVRGPSV FREYWDKPEE TKTAFTSDGW FKTXXXXXXX XXXXXXXXXX bmy_14307T0/1-371 ---------- ---------- ---------W AWTKDDVILH ---------- BACU004277/1-461 GELLVRGPSV FREYWDKPEE TKTAFTSDGW FKTGDTAVFK DGSYWIRGRT ENSP00000320646/1-576 GELLVRGPSV FREYWNKPEE TKSAFTLDGW FKTGDTVVFK DGQYWIRGRT ENSBTAP00000021234/1-586 GELLVRGPSV FREYWDKPEE TKAAFTSDGW FKTGDTVVFK DGCYWIRGRT 551 600 ENSTTRP00000003627/1-575 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXV AVIGVPDVTW GQRVTAVVTL bmy_14307T0/1-371 ---------- ---------- ---------- ---------- ------VLPL BACU004277/1-461 SVDIIKSGGY KVSALEVERL LLAHPSITDV AVIGVPDVTW GQRVTAVVTL ENSP00000320646/1-576 SVDIIKTGGY KVSALEVEWH LLAHPSITDV AVIGVPDMTW GQRVTAVVTL ENSBTAP00000021234/1-586 SVDIIKSGGY KVSALEVERL LLAHPSITDV AVIGVPDMTW GQRVTAVVTL 601 650 ENSTTRP00000003627/1-575 QEGHSLSHRE LKEWASGVLA PYAVPSELLL VEEIPRNQMG KVNKQDLVRQ bmy_14307T0/1-371 HHVHGVVNK- -------LLC PLWVGATCVM LPEFSAQLVC SSRRGVAWRP BACU004277/1-461 QEGHSLSHRE LKEWASGFLA PYAVPSELLL VEEIPRNQMG KVNKQDLVRQ ENSP00000320646/1-576 REGHSLSHRE LKEWARNVLA PYAVPSELVL VEEIPRNQMG KIDKKALIRH ENSBTAP00000021234/1-586 QEGHSLSHRE LKEWARGVLA PYAVPSELLL VEEIPRNQMG KVNKRDLVRQ 651 700 ENSTTRP00000003627/1-575 LPAR------ ---- bmy_14307T0/1-371 LRRR---AAE ---- BACU004277/1-461 LYPRDWGAPE TGRQ ENSP00000320646/1-576 FHPS------ ---- ENSBTAP00000021234/1-586 LYPHEKGAPE AGSQ