KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:12:50 2014 Check: 00 .. Name: ENSP00000253354/1-484 Len: 524 Check: 4213 Weight: 1.00 Name: ENSBTAP00000020875/1-473 Len: 524 Check: 7527 Weight: 1.00 Name: ENSTTRP00000010302/1-481 Len: 524 Check: 8915 Weight: 1.00 Name: bmy_00549T0/1-335 Len: 524 Check: 511 Weight: 1.00 Name: BACU015563/1-468 Len: 524 Check: 6462 Weight: 1.00 // 1 50 ENSP00000253354/1-484 MAGPWTFTLL CGLLAATLIQ ATLSPTAVLI LGPKVIKE-- ---------- ENSBTAP00000020875/1-473 MAYPWTFTFL CGLLAANLVG ATLSPPVVLS LSTEVIKQ-- ---------- ENSTTRP00000010302/1-481 MASPRTFTFL CGLLAANLVG ATLSPPAVLS LGPEVIEQ-- ---------- bmy_00549T0/1-335 MASPRTFTFL CGLLTANLVG ATLSPPAVLS LGPEVIKQXQ VALSDVPSQP BACU015563/1-468 MASPRTFTFL CGLLAANLVG ATLSPPAVLS LSSEVIKQ-- ---------- 51 100 ENSP00000253354/1-484 ---------- ---------- --KLTQELKD HNATSILQQL PLLSAMREKP ENSBTAP00000020875/1-473 ---------- ---------- --MLAQKLKN HDVTNTLQQL PLLTAMEEES ENSTTRP00000010302/1-481 ---------- ---------- --RLTQKLKD HDAVDTLRQL PLLSAMKKES bmy_00549T0/1-335 GAPTKPSFLP LLLDPNPWDL SPVLTQKLKD HDAVNTLQQL PLLSAMKKEL BACU015563/1-468 ---------- ---------- --MLTQKLKD HDAINTLQQL PLLSAMK-ES 101 150 ENSP00000253354/1-484 AGGIPVLGSL VNTVLKHIIW LKVITANILQ LQVKPSANDQ ELLVKIPLDM ENSBTAP00000020875/1-473 SRGI--FGNL VKSILKHILW MKVTSASIGQ LQVQPLANGR QLMVKAPLDV ENSTTRP00000010302/1-481 AGGI--FGSL VRSILKHIVQ LKVTSASIHQ LQVQPLHDGR ELMINVPLDM bmy_00549T0/1-335 XGGI--FSSL VKSILKHIIW ---------- ---------- ---------- BACU015563/1-468 AGGI--FSRL VKSILKHIIW LKVTSASILQ LQVQPLDDGR ELMIHVPLDM 151 200 ENSP00000253354/1-484 VAGFNTPLVK TIVEFHMTTE AQATIRMDTS ASGPTRLVLS DCATSHGSLR ENSBTAP00000020875/1-473 VAGFNVPLFK TVVELHVEVE AQAIIHVETR EKDHARLVLS ECSNTGGSLR ENSTTRP00000010302/1-481 VAGFNTPLVK TIVELHMEVE AQAIIHVETS ERDHSRLVLS NCSNSHGRPR bmy_00549T0/1-335 ------PLVK TIVELHMEVE AQAIIHVETG ERDHTRL--- ---------- BACU015563/1-468 VAGFNTPLVK TIVELHMEVE AQAIIHVETG ERNHTRLVLS DCSNTRGRLR 201 250 ENSP00000253354/1-484 IQLLHKLSFL VNALAKQVMN LLVPSLPNLV KNQLCPVIEA SFNGMYADLL ENSBTAP00000020875/1-473 VSLLHKLSFL LKCLADKVIS LLTPALPKLV KSELCPVLKA GFEDMRGELL ENSTTRP00000010302/1-481 ISLLHKRSFL LNSLADKVIS LLVPALPKLV KSELCPVIEA AFEDMREDLL bmy_00549T0/1-335 ---------- ---------- ---------- ---LCPVIKA AFEDMRADLL BACU015563/1-468 ISLLHKLSFL LNSLADKVIR LLVPALPKLV KSELCPVIKA AFEDMCADLL 251 300 ENSP00000253354/1-484 QLVKVPISLS IDRLEFDLLY PAIKGDTIQL YLGAKLLDSQ GKVTKWFNNS ENSBTAP00000020875/1-473 NLTKVPMSLN SEHLKLDFIS PVIDHSVVHL ILGARLFNSE GKVTKLFNVA ENSTTRP00000010302/1-481 NLTNVPVSLN SDHLEFDFMS PAIDHNVVHL ILGAKLVDSE GKVTKLFNDS bmy_00549T0/1-335 NLTKVPVSLN SDHLEFDFMS PAIDHNVVHL ILGAKLVDSE GKVTKLFNDS BACU015563/1-468 NLTKVPVSLN SDHLEFDFMS PAIDHDVVHL ILGAKLVDSE GKVTKLFNDS 301 350 ENSP00000253354/1-484 AASLTMPTLD NIPFSLIVSQ DVVKAAVAAV LSPEEFMVLL DSVLPESAHR ENSBTAP00000020875/1-473 GDSLNLPTLN QTPFRLTVRK DVVVAIIAAL IHSGKLTVLL DYVLPEVARQ ENSTTRP00000010302/1-481 VDSLNLPSLY HSPFSLTMRK DIVNAAVAAL LPPEELMVLL DYVLPETARR bmy_00549T0/1-335 VDSLNLPSLH HTPFSLTMRK DVVNAAVAAL LPPGELMVLL DYVLPEMARR BACU015563/1-468 VDSLNLPSLH YTPFSLTMRK DVVNAAVAAL LPPEELMVLL DYVLPETARR 351 400 ENSP00000253354/1-484 LKSSIGLINE KAADKLGSTQ IVKILTQDTP EFFIDQGHAK VAQLIVLEVF ENSBTAP00000020875/1-473 LRSSIKVIDE TAAAQLGPTQ IVKIMSQTTP MLILDQGNAK VAQLIVLEIF ENSTTRP00000010302/1-481 LKSSIKVISE KAANQLGRTQ IVKILTQKTP ELLADQGHAK VAQLIMLEVF bmy_00549T0/1-335 LKSSIKVISE KAANQLGPTQ IVKILTQETP ELFVDQGNAK VAQLIMLEVF BACU015563/1-468 LKSSIKVISE KAANQLGPTQ IVKILTQENP ELFVDQGNAK VAQLIMLEVF 401 450 ENSP00000253354/1-484 PSSEALRPLF TLGIEASSEA QFYTKGDQLI LNLNNISSDR IQLMNSGIGW ENSBTAP00000020875/1-473 ATDKDSRPLF TLGIEASSDI QFYVEDGLLV FSFNEIRADR IHLMNSDIGV ENSTTRP00000010302/1-481 ATNEAYHPFF TLGIEATSEA QFYTRGDLLM LYFNKIXXXX XXXXXXXXXX bmy_00549T0/1-335 ATNEAYRPFF TLG------- ---------- ---------- ---------- BACU015563/1-468 ATNEAYRPFF TLGIEATSEA QFYTRGDLFM LNFNKISSDR IHLMNSAIGL 451 500 ENSP00000253354/1-484 FQPDVLKNII TEIIHSILLP NQNG------ KLRSGVPVSL VKALGFEAAE ENSBTAP00000020875/1-473 FNPKLLNNIT TKILTSILLP NENG------ KLRSGIPVSM VKNLGFKSIS ENSTTRP00000010302/1-481 XXPELLKDFT TKILASVLLP NENG------ KLRSGISVSM VKALGFEAVS bmy_00549T0/1-335 ---------- --IVSSVV-- ---------- ---------- ---------- BACU015563/1-468 FNPELLKDII TKILASVLLP NENESPGPVK KKEGGLLCQP PSDLHPETQA 501 550 ENSP00000253354/1-484 SSLTKDALVL TPASLWKPSS PVSQ ENSBTAP00000020875/1-473 LSLTKEALVV TQASS----- ---- ENSTTRP00000010302/1-481 WSLTEDALVV TPASS-NLSF PLSQ bmy_00549T0/1-335 ---------- ---------- ---- BACU015563/1-468 PSVHP----- ---------- ----