KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:12:28 2014 Check: 00 .. Name: ENSP00000292586/1-343 Len: 381 Check: 9488 Weight: 1.00 Name: ENSBTAP00000020727/1-369 Len: 381 Check: 6521 Weight: 1.00 Name: bmy_03355T0/1-274 Len: 381 Check: 759 Weight: 1.00 Name: ENSTTRP00000004185/1-339 Len: 381 Check: 6924 Weight: 1.00 // 1 50 ENSP00000292586/1-343 MASLQRSRVL RCCSCRLFQA HQVKKSVKWT CKACGEKQSF LQAYGEGSGA ENSBTAP00000020727/1-369 MAPPQQARVL RCCCCSLFQA HQVKKSLKWT CKACGKKQSF LQAYGEGSGA bmy_03355T0/1-274 MAPPQRVRVL RCSCCRLFQA HQ-------- ---------- --AYGEGSGA ENSTTRP00000004185/1-339 MAPPQQVRVL RCSCCRLFQA HQVKKSLKWT CKACGEKQSF LRAYGEGSGA 51 100 ENSP00000292586/1-343 DCRRHVQKLN LLQGQVSELP LRSLEETVSA SEEENVGHQQ AGNVKQQEKS ENSBTAP00000020727/1-369 DCRRHVQKLN LLQGQISEMS LRSLGESISA NEEENVGPWQ AARASPQETL bmy_03355T0/1-274 DCRHHVQKLN LLQGQISEMS LRSPEESINA DEEENARPRQ PAPASLQH-- ENSTTRP00000004185/1-339 DCRHHVQKLN LLQGQISEMS LRSLEESINA DEEENARPRQ AVPAILQEKL 101 150 ENSP00000292586/1-343 QPSESRWLKY LEKDSQELEL EGTGVCFSKQ PSSKMEEPGP RFSQDLPRKR ENSBTAP00000020727/1-369 QPSKNRWLKY LERDSKELGL KGGGVCFNSQ PSSETEKPDP PFSTGLPRKR bmy_03355T0/1-274 ---------- ---------- ---------- ---------- -----FPSAR ENSTTRP00000004185/1-339 QPSKNRWLKY LERDSKE-QL EEGGVCFIRQ PSSKREKPDP PFSTGLPRKR 151 200 ENSP00000292586/1-343 KWSRSTVQPP CSRGVQDSGG SEVAWGPQK- ---------- ---------- ENSBTAP00000020727/1-369 KWNQSTVQPL CGPHVQDSRN CEVTLKSLKA RPLHPTWGAR SSPDCSTWDL bmy_03355T0/1-274 KWSQSTVQPP CSPNVQDSRN CEVTLKSLK- ---------- ---------- ENSTTRP00000004185/1-339 KWSQSTVQPP CSPNIQDSRN CEVTLKSLK- ---------- ---------- 201 250 ENSP00000292586/1-343 ---------- ---GQAGLTW KVKQGSSPCL QENSADCSAG ELRGPGKELW ENSBTAP00000020727/1-369 PCISEELPPS FTQDRAGLAG KGRESS---- ---REDLDTT ELV-PRGEPP bmy_03355T0/1-274 ---------- ---DHTGLTG KVKEGSS--- ---REDWDTR ELVVPRGEPP ENSTTRP00000004185/1-339 ---------- ---DHTGLTG KVKEGSS--- ---REDWDTR ELVVPPGEPP 251 300 ENSP00000292586/1-343 SPIQQVTATS SKWAQFVLPP RKSSHVDSEQ PRSLQRDPRP AGPAQAKQGT ENSBTAP00000020727/1-369 CPAQQVRTMS -KWEQCL--- GNSSHLDTEP LTPLQRGLRP IQAAQAEQGA bmy_03355T0/1-274 CLAQQVRTMS PKWEQFLPPL GNSSYLETEP LTPLQRGPRP ARAARAEQGT ENSTTRP00000004185/1-339 CPAQQVRTVS PKWEQFLPPL GNSSHLDTEP LTPLQRGPRP ARAARTEQGT 301 350 ENSP00000292586/1-343 PRAQASRE-G LSRPTAAVQL PRATHPVTSG SERPCGKTSW DAR--TPWAE ENSBTAP00000020727/1-369 PRAQTPREGG LCRLPGARQS PQTTHTPMPG PKWLCGRIPE QSQGIGPWAE bmy_03355T0/1-274 PRTQTPREGG LCRTPGALQP PQATHTPTPG PKRLCGKTPE QSGGTGPWAE ENSTTRP00000004185/1-339 PRTQTPRE-G LCRTLGALQL PQATHTPTPG PKRLCGKTPE QSGGTGPWAE 351 400 ENSP00000292586/1-343 GGPLVLEAQN PRP-TRLCDL FITGEDFDDD V ENSBTAP00000020727/1-369 GVPLVKGMQA RSSLMRLCDL FKTGEDFDDD L bmy_03355T0/1-274 GGPLVKGMQE PSSLVRLCDL FKTGEDFDDD L ENSTTRP00000004185/1-339 GGALVKGMQE PSSLLRLYDL FKTGEDFDDH L