KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:11:36 2014 Check: 00 .. Name: bmy_14152T0/1-1198 Len: 1404 Check: 4620 Weight: 1.00 Name: ENSBTAP00000020443/1-628 Len: 1404 Check: 8253 Weight: 1.00 Name: BACU014291/1-621 Len: 1404 Check: 7244 Weight: 1.00 Name: ENSTTRP00000011757/1-665 Len: 1404 Check: 7297 Weight: 1.00 // 1 50 bmy_14152T0/1-1198 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000020443/1-628 ---------- ---------- ---------- -------SRR YGQYTMNQEV BACU014291/1-621 ---------- ---------- ---------- ---------- -----MNQEI ENSTTRP00000011757/1-665 MSWLSSSQGV VLTAYHPSGK DQALGGNHGK GGEEATTSRR YGQYTMNQEI 51 100 bmy_14152T0/1-1198 ---------- ---------- ---MNFLA-- -------DDK KSSVEI---- ENSBTAP00000020443/1-628 TKVTERPPFD RSGSQDSLDE LSMEAYWTEL ENIKKSHENR QDDQEVVVVK BACU014291/1-621 TKVIERPPFD RSSSQDSLDE LSMEDYWTEL ENIKKSSENR QEDQEVVVVK ENSTTRP00000011757/1-665 TKVVERPPFD RSSSQDSLDE LSMEDYWTEL ENIKKSSENR QEDQEVVVVK 101 150 bmy_14152T0/1-1198 ----DQVKSF SFAEVALPSL ---------- ---------- ---------- ENSBTAP00000020443/1-628 EPDGNDLDSY WLREAGLSNL FGETAGDPQE SMVFLSTLTR TQAAAVQKRV BACU014291/1-621 EPDEGELEEE WLKEAGLSNL FGEAAGDPQE SMVFLSTLTR TQAAAVQKRV ENSTTRP00000011757/1-665 EPDEGELEEE WLKEAGLSNL FGEAAGDNQE SMVFLSTLTR TQAAAVQKRV 151 200 bmy_14152T0/1-1198 ---------- ---------- --------SQ RTEP------ ---------- ENSBTAP00000020443/1-628 ETVSQTLRKK NKQYQVPDVR DIFAQQTGSK EKEAPDGTES QSVGTDENKY BACU014291/1-621 ETVSQTLRKK NKQYQVPDVR DIFAQQRGSK EREPPDGRES QSVRTDENKY ENSTTRP00000011757/1-665 ETVSQTLRKK NKQYQVPDVR DIFAQQRGSK EREPPDGAES QSVRTDENKY 201 250 bmy_14152T0/1-1198 -------SSL LTQQKRLDSL ---------- ---------E TIADSKEGS- ENSBTAP00000020443/1-628 RGKDDQASHL GVGGKELTPL VPEEAPASET DINLEVSFAE QAVSQKESSR BACU014291/1-621 QGKDDQASSL VVGEKELTPL VPEEAPASET DINLEVSFAE QAVNQKESSR ENSTTRP00000011757/1-665 QGKDDQASSL VVGGKELTPL VPEEAPVSET DINLEVSFAE QAVNQKESSR 251 300 bmy_14152T0/1-1198 ---------- ----SFRLPK DKTGTTKIGD LAPQDMKKVC HLALIELTAL ENSBTAP00000020443/1-628 EKIQRSRGDD ATLLTYRVPK DKTGTTRIGD LAPQDMKKVC HLALIELTAL BACU014291/1-621 EKIQRSKEDD ALLPSFRLPK DKTGTTKIGD LAPQDMKKVC HLALIELTAL ENSTTRP00000011757/1-665 EKIQRSKGDD ALLPSFRLPK DKTGTTKIGD LAPQDMKKVC HLALIELTAL 301 350 bmy_14152T0/1-1198 YDVLGVELKQ LKAVKIKTKD SGLFCVPLTV LLEQDQKKVP GTRIPLIFQK ENSBTAP00000020443/1-628 YDVLGIELKQ QKAVKIKTRD SGLFCVPLTV LLEQDQKKVP GTRIPLIFQK BACU014291/1-621 YDVLGVELKQ LKAVKIKTKD SGLFCVPLTV LLEQDQKKVP GTRIPLIFQK ENSTTRP00000011757/1-665 YDVLGVELKQ QKAVKIKTKD SGLFCVPLTV LLEQDQKKVP GTRIPLIFQK 351 400 bmy_14152T0/1-1198 MLNLGLYLLR MPNSERSSVY TQLISRIEEG GLETEGLLRI PGAAVRIKGR ENSBTAP00000020443/1-628 ---------- ---------- --LISRIEEG GLETEGLLRI PGVAVRIK-- BACU014291/1-621 ---------- ---------- --LISRIEEG GLETEGLLRI PGAAVRIK-- ENSTTRP00000011757/1-665 ---------- ---------- --LISRIEEG GLETEGLLRI PGAAVRIK-- 401 450 bmy_14152T0/1-1198 MINSTRVLEN LCQELEAKFY EGTFNWESVK QHDAASLLKF FIRELPQPLL ENSBTAP00000020443/1-628 ---------N LCQELEAKFY EGTFNWESVK QHDAASLLKL FIRELPQPLL BACU014291/1-621 ---------N LCQELEAKFY EGTFNWEGVK QHDAASLLKL FIRELPQPLL ENSTTRP00000011757/1-665 ---------N LCQELEAKFY EGTFNWESVK QHDAASLLKL FIRELPQPLL 451 500 bmy_14152T0/1-1198 SVEYLKAFQA VQNLPTKKQQ LQALNLLVIL LPDANRDTLK GHSPQRKHSS ENSBTAP00000020443/1-628 SVEYLKAFQA VQNLPTRKQQ LQALNLLVIL LPDANRDTLK ---------- BACU014291/1-621 SVEYLKAFQA VQNLPTKKQQ LQALNLLVIL LPDANRDTLK ---------- ENSTTRP00000011757/1-665 SVEYLKAFQA VQNLPTKKQQ LQALNLLVIL LPDANRDTLK ---------- 501 550 bmy_14152T0/1-1198 SSGCVNQWSS FEDKAHWIWL ADCDLKALFL FQALLEFLQR VVDNKEKNKM ENSBTAP00000020443/1-628 ---------- ---------- ---------- --ALLEFLQR VVDNKEKNKM BACU014291/1-621 ---------- ---------- ---------- --ALLEFLQR VVDNKEKNKM ENSTTRP00000011757/1-665 ---------- ---------- ---------- --ALLEFLQR VVDNKEKNKM 551 600 bmy_14152T0/1-1198 TVMNVAMVMA PNLFMYHTLG LKSSEQREFV MAAGIAHIMH LLIKYQKLLW ENSBTAP00000020443/1-628 TVMNVAMVMA PNLFMYHTLG LKSGEQREFV MAAGIANIMH LLIRYQKLLW BACU014291/1-621 TVMNVAMVMA PNLFMYHTLG LKSSEQREFV MAAGIAHIMH LLIKYQKLLW ENSTTRP00000011757/1-665 TVMNVAMVMA PNLFMYHTLG LKSSEQREFV MAAGIANIMH LLIKYQKLLW 601 650 bmy_14152T0/1-1198 TVPVSSCLLI PKFIVNQVRK QNTENHRKDK KAMKKLLKKM AYDREKYEKQ ENSBTAP00000020443/1-628 T--------I PKFIVNQVRK QNTENQRKDK KAMKKLLKKM AYDREKYEKQ BACU014291/1-621 T--------I PKFIVNQVRK QNTENHRKDK KAMKKLLKKM AYDREKYEKQ ENSTTRP00000011757/1-665 T--------I PKFIVNQVRK QNTENHRKDK KAMKKLLKKM AYDREKYEKQ 651 700 bmy_14152T0/1-1198 DKSANDGEKI YPGNNYRTTK KVEDNVKYYG YVLTSESKKK LYIYERTVLH ENSBTAP00000020443/1-628 DKSAND---- ---------- ---------- ---------- ---------- BACU014291/1-621 DKSAND---- ---------- ---------- ---------- ---------- ENSTTRP00000011757/1-665 DKSAND---- ---------- ---------- ---------- ---------- 701 750 bmy_14152T0/1-1198 MEKKSVSLIF CHSPEESWSW QQCGVDSGSF VAKVVCLVTA LFRIPSLVSL ENSBTAP00000020443/1-628 ---------- ---------- ---------- ---------- ---------- BACU014291/1-621 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011757/1-665 ---------- ---------- ---------- ---------- ---------- 751 800 bmy_14152T0/1-1198 NSSDPEHCCR MEYATRSSGG GREQRKADVP QGVIRVQAPH LSKVSMAIQL ENSBTAP00000020443/1-628 ---------- ---------- ------ADVP QGVIRVQAPH LSKVSMAIQL BACU014291/1-621 ---------- ---------- ------ADVP QGVIRVQAPH LSKVSMAIQL ENSTTRP00000011757/1-665 ---------- ---------- ------ADVP QGVIRVQAPH LSKVSMAIQL 801 850 bmy_14152T0/1-1198 TEELRASDVL ARFLSQE-RD IRDVGLLASV YSVSHRISSP QSNIQLFCQN ENSBTAP00000020443/1-628 TEELKASDVL ARFLSQE-SG V--------- ---------- -------AQT BACU014291/1-621 TEELRASDVL ARFLSQESSG V--------- ---------- -------AQT ENSTTRP00000011757/1-665 TEELRASDVL ARFLSQE-SG V--------- ---------- -------AQT 851 900 bmy_14152T0/1-1198 FSNFNTELHI LGIKHGFLLR PIQNVATLNK GERCLDDDTY MKDLYQLNPN ENSBTAP00000020443/1-628 LKNGEVFLYE IG---G---- --------NI GERCLDDNTY MKDLYQLNPN BACU014291/1-621 LKNGEVFLYE IG---G---- --------NI GERCLDDDTY MKDLYQLNPN ENSTTRP00000011757/1-665 LKNGDVFLYE IG---G---- --------NI GERCLDDDTY MKDLYQLNPN 901 950 bmy_14152T0/1-1198 AEWSTVRVIL LGMTQSYEQA FIRLVCTFFL TILISHLLIS RWHCWSGIPS ENSBTAP00000020443/1-628 AEW------- ---------- ---------- ---------- ---------- BACU014291/1-621 AEW------- ---------- ---------- ---------- ---------- ENSTTRP00000011757/1-665 AEW------- ---------- ---------- ---------- ---------- 951 1000 bmy_14152T0/1-1198 QLNLEVLKVN LSSEYAVKTQ CQASARQLGK NSMDLSLRSL IVKIHLRTAA ENSBTAP00000020443/1-628 ---------- ---------- ---------- ---------- ---------- BACU014291/1-621 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011757/1-665 ---------- ---------- ---------- ---------- ---------- 1001 1050 bmy_14152T0/1-1198 AEGNYSGHAS FILILVFMLR QGKEFTFFII KKLLDITSYD DGNGDDAVLM ENSBTAP00000020443/1-628 ---------- ---------- --------VI K--------- ---------- BACU014291/1-621 ---------- ---------- --------VI K--------- ---------- ENSTTRP00000011757/1-665 ---------- ---------- --------VI K--------- ---------- 1051 1100 bmy_14152T0/1-1198 EPEQVQSRTR SDGLWDAISD DSEPSTLGDE LLLAHSLYCV NSSKRIKKQY ENSBTAP00000020443/1-628 ---------- ---------- -SKPS----- ---------- ---------- BACU014291/1-621 ---------- ---------- -SKPS----- ---------- ---------- ENSTTRP00000011757/1-665 ---------- ---------- -SKPS----- ---------- ---------- 1101 1150 bmy_14152T0/1-1198 LKNSWIHFLN IADKEREQWI RRENSTRNES LFLLRLKLPT TRGIIGACFY ENSBTAP00000020443/1-628 ---------- ---------- ---------- ---------- ---------- BACU014291/1-621 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011757/1-665 ---------- ---------- ---------- ---------- ---------- 1151 1200 bmy_14152T0/1-1198 WGQEVKGQGT AFTAPSECCT RSRKFVDCPC ILTCPKYNNS HLLTLVNYLT ENSBTAP00000020443/1-628 ---------- ---------- ---------- ---------- ---------- BACU014291/1-621 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011757/1-665 ---------- ---------- ---------- ---------- ---------- 1201 1250 bmy_14152T0/1-1198 IEAKQGGIEM MSSKAFAYKV NFIYAFWVYP KKFLLDFVVM LEFPKNRAPP ENSBTAP00000020443/1-628 ---------- ---------- ---------- ---------- ---------- BACU014291/1-621 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011757/1-665 ---------- ---------- ---------- ---------- ---------- 1251 1300 bmy_14152T0/1-1198 EVNCQVFFPV EAQLAKQCQW PFPFLQPPGL KGRSLLTFVS VVQCKQENGM ENSBTAP00000020443/1-628 ---------- ---------- ---------- ---------- ---------- BACU014291/1-621 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011757/1-665 ---------- ---------- ---------- ---------- ---------- 1301 1350 bmy_14152T0/1-1198 RFTDESPKTS TYFFSRDSGK GRSSKSRFFF LFTYISDNSH CSKQLISLIV ENSBTAP00000020443/1-628 ---------- ---------- ---------- ---------- ---------- BACU014291/1-621 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011757/1-665 ---------- ---------- ---------- ---------- ---------- 1351 1400 bmy_14152T0/1-1198 QSTFLKKADN LVGMGVWKKS NEKYSAFFMI ANLDKLCPYK FMSHFRMWIL ENSBTAP00000020443/1-628 ---------- ---------- ---------- ---------- ---------- BACU014291/1-621 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011757/1-665 ---------- ---------- ---------- ---------- ---------- 1401 1450 bmy_14152T0/1-1198 YGQL ENSBTAP00000020443/1-628 ---- BACU014291/1-621 ---- ENSTTRP00000011757/1-665 ----