KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:11:23 2014 Check: 00 .. Name: ENSTTRP00000013342/1-1185 Len: 1230 Check: 4741 Weight: 1.00 Name: ENSP00000362013/1-1200 Len: 1230 Check: 8163 Weight: 1.00 Name: ENSBTAP00000020376/1-1210 Len: 1230 Check: 5619 Weight: 1.00 Name: bmy_00079T0/1-1207 Len: 1230 Check: 511 Weight: 1.00 Name: BACU017985/1-1113 Len: 1230 Check: 606 Weight: 1.00 // 1 50 ENSTTRP00000013342/1-1185 ------MGDQ QLYKTNHVAH GGENLFYQQP PLGVHGGLNH NYGNTVPGAG ENSP00000362013/1-1200 ------MGDQ QLYKTNHVAH GSENLFYQQP PLGVHSGLNH NYGNAVTGGG ENSBTAP00000020376/1-1210 ------MGDQ QLYKTNHVAH GGENLFYQQP PLGVHGGLNH SYGNTVPGAG bmy_00079T0/1-1207 ------MGDQ QLYKTNHVAH GGENLFYQQP PLGVHGGLNH NYGNTVPGAG BACU017985/1-1113 MIKAGTMGDQ QLYKTNHVAH GGENLFYQQP PLGVHGGLNH NYGNTVPGAG 51 100 ENSTTRP00000013342/1-1185 MDAPQASPIS PHFPQDTRDG LGLPVGSKTL GQVDTSRQGG WAGHAGPGNH ENSP00000362013/1-1200 MDAPQASPIS PHFPQDTRDG LGLPVGSKNL GQMDTSRQGG WGSHAGPGNH ENSBTAP00000020376/1-1210 MDAPQASPIS PHFPQDTRDG LGLAVGSKNL GQVDTSRQGG WGGHAGPGNH bmy_00079T0/1-1207 MDAPQASPIS PHFPQDTRDG LGLPVGSKTL GQVDSSRQGG WAGHAGPGNH BACU017985/1-1113 MDAPQASPIS PHFPQDTRDG LGLPVGSKTL GQADSSRQGG WAGHAGPGNH 101 150 ENSTTRP00000013342/1-1185 VQLRGNLTNS NMMWGSPAQA EPTDGYQYTY SQASEIRTQK LTSGVLHKLD ENSP00000362013/1-1200 VQLRGNLANS NMMWGAPAQA EPTDGYQYTY SQASEIRTQK LTSGVLHKLD ENSBTAP00000020376/1-1210 VQLRGNLTNS NMMWGAPAQA EPTDGYQYTY SQASEIRTQK LTSGVLHKLD bmy_00079T0/1-1207 VQLRGNLTNS NMMWGSPAQA EPTDGYQYTY SQASEIRTQK LTSGVLHKLD BACU017985/1-1113 VQLRGNLTNS NMMWGSPAQA EPTDGYQYTY SQASEIRTQK LTSGVLHKLD 151 200 ENSTTRP00000013342/1-1185 SFTQVFANQN LRIQVNNMAQ VLHTQSAVMD GAPESALRQL LSQKPMEPPA ENSP00000362013/1-1200 SFTQVFANQN LRIQVNNMAQ VLHTQSAVMD GAPDSALRQL LSQKPMEPPA ENSBTAP00000020376/1-1210 SFTQVFANQN LRIQVNNMAQ VLHTQSAVMD GAPDSALRQL LSQKPMEAPA bmy_00079T0/1-1207 SFTQVFANQN LRIQVNNMAQ VLHTQSAVMD GAPESALRQL LSQKPMEPPA BACU017985/1-1113 SFTQVFANQN LRIQVNNMAQ VLHTQSAVMD GAPESALRQL LSQKPMETPA 201 250 ENSTTRP00000013342/1-1185 PALPSRYQQV PQQPHPGFTG GLSKPALQVG PHPGQGHPYY DYQQPLAQMP ENSP00000362013/1-1200 PAIPSRYQQV PQQPHPGFTG GLSKPALQVG QHPTQGHLYY DYQQPLAQVP ENSBTAP00000020376/1-1210 AALPSRYQQA SQQPHPGFTG GLSKPALQVG QHPSQGHLYY DYQQPLAQMP bmy_00079T0/1-1207 PALPSRYQQV PQQPHPGFTG GLSKPALQVG PHPSQGHPYY DYQQPLAQMP BACU017985/1-1113 PALPSRYQQV PQQPHPGFTG GLSKPALQVG PHPSQGHPYY DYQQPLAQMP 251 300 ENSTTRP00000013342/1-1185 VQGGQSLQAP QMLSQHMQQL QQHQYYPQQQ QQQAGQPRMS AQEMQP--PP ENSP00000362013/1-1200 VQGGQPLQAP QMLSQHMQQM QQHQYYPPQQ QQQAGQQRIS MQEIQT--QP ENSBTAP00000020376/1-1210 VQGGQSLQAP QMLSQHMQQL QPHQYYPPQQ QTHAGQQRVS MQEMQP-PPQ bmy_00079T0/1-1207 VQGGQSLQAP QMLSQHMQQL QQHQYYPQQQ QQQAGQPRMS VQEMQP-QQQ BACU017985/1-1113 VQGGQSLQAP QMLSQHMQQL QQHQYYPQQQ QQQAGQPRMS VQEMQPQQQQ 301 350 ENSTTRP00000013342/1-1185 QQICPAQPQ- ---------- QLQQRQGSMQ IPQYYQSSPM MQHLPESRQP ENSP00000362013/1-1200 QQIRPSQPQP PPQQQQPQQL QLQQRQGSMQ IPQYYQPQPM MQHLQEQQQQ ENSBTAP00000020376/1-1210 QQIRPPQPQP ---------- QPQPRQGSMQ IPQYYQSPPM IQPLPEPQQP bmy_00079T0/1-1207 QQIRPAQPQ- ---------- QLQQRQGSMQ IPQYYQSSPM MQHLPESRQP BACU017985/1-1113 QQIRPAQPQ- ---------- QLQQRQGSMQ IPQYYQSSPM IQHLPESRQP 351 400 ENSTTRP00000013342/1-1185 QMHLQPPAYH RDPHQYTPEQ AHAVQLIQLG SVPQYYYQEP QQPYGHPMYQ ENSP00000362013/1-1200 QMHLQPPSYH RDPHQYTPEQ AHTVQLIPLG SMSQYYYQEP QQPYSHPLYQ ENSBTAP00000020376/1-1210 QMHLQPSSYH RDPHQYTPEQ AHAVQLIQLG SMPQYYYQEP QQPYGHPVYQ bmy_00079T0/1-1207 QMHLQPPSYH RDPHQYTPEQ AHAVQLIQLG SVPQYYYQEP QQPYGHPMYQ BACU017985/1-1113 QMHLQPPSYH RDPHQYTPEQ AHAVQLIQLG SVPQYYYQEP QQPYGHPMYQ 401 450 ENSTTRP00000013342/1-1185 QSHLPQHQQP EDGQPKTYPS DRQAQAMLSS HGDLGPPDTG MGDPASSDLN ENSP00000362013/1-1200 QSHLSQHQQR EDSQLKTYSS DRQAQAMLSS HGDLGPPDTG MGDPASSDLT ENSBTAP00000020376/1-1210 QSHLPQHQQP EDGQPKTYPG DRQAQAMLSS HGDLGPPDTG MGDAASSDLN bmy_00079T0/1-1207 QSHLAQHQQP EDGQPKTYPS DRQAQAMLSS HGDLGPPDTG MSDPTSSDLN BACU017985/1-1113 QSHLPQHQQP EDGQPKAYPS DRQAQAMLSS HGDLGPPDTG MGDPASSDLN 451 500 ENSTTRP00000013342/1-1185 RVSSVLPHRP LLSPSGIHLN NMGPQHQQPS PSAVWPQMHL PDGRAQPGSP ENSP00000362013/1-1200 RVSSTLPHRP LLSPSGIHLN NMGPQHQQLS PSAMWPQMHL PDGRAQPGSP ENSBTAP00000020376/1-1210 RASSALPHRP LLSPGSIHLN NMGSQHQQLS PSAVWPQMHL PDGRAQPGSP bmy_00079T0/1-1207 RVSSALPHRP LLSPSGIHLN NMGPQHQQPS PSAVWPQMHL PDGRAQPGSP BACU017985/1-1113 RVSSALPHRP LLSPSGIHLN NMGPQHQQPS PSAVWPQMHL PDGRAQPGSP 501 550 ENSTTRP00000013342/1-1185 D-SSGQPKGV FGEQFDAKNK LTCSICLKEF KSLPALNGHM RSHGGMRASP ENSP00000362013/1-1200 E-SSGQPKGA FGEQFDAKNK LTCSICLKEF KNLPALNGHM RSHGGMRASP ENSBTAP00000020376/1-1210 ESSSGQPKGV FGEQFDAKNK LTCSICLKEF KSLPALNGHM RSHGGMRASP bmy_00079T0/1-1207 D-SSGQPKGL FGEQFDAKNK LTCSICLKEF KSLPALNGHM RSHGGMRASP BACU017985/1-1113 D-SSGQPKGV FGEQFDAKNK LTCSICLKEF KSLPALNGHM RSHGGMRASP 551 600 ENSTTRP00000013342/1-1185 SLKQEEGEKA PAPPHQ---P PLPPPPPPPQ LPPEAEGLTP MVMPVSVPVK ENSP00000362013/1-1200 NLKQEEGEKV LPPQPQPPLP PPPPPPPPPQ LPPEAESLTP MVMPVSVPVK ENSBTAP00000020376/1-1210 SLKQEEGEKA PAPPPQPQ-P PLPPPPPPPQ LPPEAESLTP MVMPVSVPVK bmy_00079T0/1-1207 SLKQEEGEKA PAPPPQP--P LPPPPPPPPQ LPPEAESLTP MVMPVSVPVK BACU017985/1-1113 SLKQ------ ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000013342/1-1185 LLPPKPSSQG FANSVAAAPS ARDKPASSMS DDEMPVL--- ---------- ENSP00000362013/1-1200 LLPPKPSSQG FTNSTVAAPS ARDKPASSMS DDEMPVL--- ---------- ENSBTAP00000020376/1-1210 LLPPKPSSQG FANSVAAAPS ARDKPASSMS DDEMPVLVRM TLSPPHSPQG bmy_00079T0/1-1207 LLPPKPSSQG FANSVAAAPS ARDKPASSMS DDEMPVLVRM TLSPPHSPQG BACU017985/1-1113 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000013342/1-1185 -------XXX XXXXXXXXXX XXXXXXXX-X XXXXXXXXXX XXXXXXXXXX ENSP00000362013/1-1200 -------EIP RKHQPSVPKA EEPLKTVQ-E KKKFRHRPEP LFIPPPPSYN ENSBTAP00000020376/1-1210 AAPNPPAEIP KKHQPGAAKA EEALRSAPAE KKKFRHRPEP LFIPPPPSYT bmy_00079T0/1-1207 AAPHPPAEIP KKHQPGLAKA EEALKTAP-E KKKFRHRPEP LFIPPPPSYT BACU017985/1-1113 -------EIP KKHQPGLAKA EEALKTAP-E KKKFRHRPEP LFIPPPPSYA 701 750 ENSTTRP00000013342/1-1185 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000362013/1-1200 PNPAASYSGA TLYQSQLRSP RVLGDHLLLD PTHELPPYTP PPMLSPVRQG ENSBTAP00000020376/1-1210 PNLAASHSGA TLYQSQLRSP RVLGDHLLLD PAHELPPYTP PPMLSPVRQG bmy_00079T0/1-1207 PNLAASYSGA TLYQSQLRSP RVLGDHLLLD PSHELPPYTP PPMLSPVRQG BACU017985/1-1113 PNLAASHSGA TLYQSQLRSP RVLGDHLLLD PSHELPPYTP PPMLSPVRQG 751 800 ENSTTRP00000013342/1-1185 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000362013/1-1200 SGLFSNVLIS GHGPGAHPQL PLTPLTPTPR VLLCRSNSID GSNVTVTPGP ENSBTAP00000020376/1-1210 SGLFSNVLIA GHGPGAHPQL PLTPLTPTPR VLLCRSNSID GSNLTVTPGP bmy_00079T0/1-1207 SGLFSNVLIS GHGAGAHPQL PLTPLTPTPR VLLCRPNSID GSNVTVTPGP BACU017985/1-1113 SGLFSNVLIS GHGASAQPQL PLTPLTPTPR VLLCRPNSID GSNVTVTPGP 801 850 ENSTTRP00000013342/1-1185 XXXXXXXXXR INIGLRFQAE IPELQDVSAL AQDTHKATLV WKPWPELENH ENSP00000362013/1-1200 GEQTVDVEPR INIGLRFQAE IPELQDISAL AQDTHKATLV WKPWPELENH ENSBTAP00000020376/1-1210 GEQTVDVEPR INIGLRFQAE IPELQDVSAL AQDTHRATLV WKPWPELENH bmy_00079T0/1-1207 GEQTVDVEPR INIGLRFQAE IPELQDVSAL AQDTHKATLV WKPWPELENH BACU017985/1-1113 GEQTVDVEPR INIGLRFQAE IPELQDVSAL AQDTHKATLV WKPWPELENH 851 900 ENSTTRP00000013342/1-1185 DFQQRVENLL NLCCSSALPG GGTNSEFALH SLFEAKGDVM AALEMLLXXX ENSP00000362013/1-1200 DLQQRVENLL NLCCSSALPG GGTNSEFALH SLFEAKGDVM VALEMLLLRK ENSBTAP00000020376/1-1210 DLQQRVENLL NLCCSSALPG GGTNSEFALH SLFEAKGDVM AALEMLLLRK bmy_00079T0/1-1207 DFQQRVENLL NLCCSSALPG GGTNSEFALH SLFEAKGDVM AALEMLLLRK BACU017985/1-1113 DFQQRVENLL NLCCSSALPG GGTNSEFALH SLFEAKGDVM AALEMLLLRK 901 950 ENSTTRP00000013342/1-1185 XXXXXXXXXX XXXXXXSDKW TSLERKLFNK ALATYNKDFI FVQKMVKSKT ENSP00000362013/1-1200 PVRLKCHPLA NYHYAGSDKW TSLERKLFNK ALATYSKDFI FVQKMVKSKT ENSBTAP00000020376/1-1210 PVRLKCHPLA NYHYAGSDKW TSLERKLFNK ALATYSKDFI FVQKMVKSKT bmy_00079T0/1-1207 PVRLKCHPLA NYHYAGSDKW TSLERKLFNK ALATYNKDFI FVQKMVKSKT BACU017985/1-1113 PVRLKCHPLA NYHYAGSDKW TSLERKLFNK ALATYNKDFI FVQKMVKSKT 951 1000 ENSTTRP00000013342/1-1185 VAQCVEYYYT WKKIMRLGRK HRTRLSEIID DCVTSEEDEE V-QEEEEDPE ENSP00000362013/1-1200 VAQCVEYYYT WKKIMRLGRK HRTRLAEIID DCVTSEEEEE LEEEEEEDPE ENSBTAP00000020376/1-1210 VAQCVEYYYT WKKIMRLGRK HRTRLSEIID DCVTSEEDEE V--EEEEDPE bmy_00079T0/1-1207 VAQCVEYYYT WKKIMRLGRK HRTRLSEIID DCVTSEEDEE V-QEEEEDPE BACU017985/1-1113 VAQCVEYYYT WKKIMRLGRK HRTRLSEIID DCVTSEEDEE V-QEEEEDPE 1001 1050 ENSTTRP00000013342/1-1185 EDRKSMREEE SELPKSPEPP PGPVLASAEG PPLQALGQPS GSFICEMPNC ENSP00000362013/1-1200 EDRKSTKEEE SEVPKSPEPP PVPVLAPTEG PPLQALGQPS GSFICEMPNC ENSBTAP00000020376/1-1210 EDRKSTREEE SELPKSPEPP QGPVLAPAEG PPLQALGQPS GSFICEMPNC bmy_00079T0/1-1207 EDRKSTREEE SELPKSPEPP PGPVLASAEG PPLQALGQPS GSFICEMPNC BACU017985/1-1113 EDRKSTREEE SELPKSPEPP PGPVLASAEG PPLQALGQPS GSFICEMPNC 1051 1100 ENSTTRP00000013342/1-1185 GAVFSSRQAL NGHARIHGGT NQVTKARGAV PSGKQKPGSA QSGYCSVKSS ENSP00000362013/1-1200 GAVFSSRQAL NGHARIHGGT NQVTKARGAI PSGKQKPGGT QSGYCSVKSS ENSBTAP00000020376/1-1210 GAVFSSRQAL NGHARIHGGT NQVTKARGTV PSGKQKPGSA QSGYCSVKSS bmy_00079T0/1-1207 GAVFSSRQAL NGHARIHGGT NQVTKARGAV PSGKQKPGSA QSGYCSVKSS BACU017985/1-1113 GAVFSSRQAL NGHARIHGGT NQVTKARGAV PSGKQKPGSA QSGYCSVKSS 1101 1150 ENSTTRP00000013342/1-1185 PSHSTTSGET DPTTIFPCKE CGKVFFKIKS RNAHMKTHRQ QEEQQRQKAQ ENSP00000362013/1-1200 PSHSTTSGET DPTTIFPCKE CGKVFFKIKS RNAHMKTHRQ QEEQQRQKAQ ENSBTAP00000020376/1-1210 PSHSTTSGET DPTTIFPCKE CGKVFFKIKS RNAHMKTHRQ QEEQQRQKAQ bmy_00079T0/1-1207 PSHSTTSGET DPTTIFPCKE CGKVFFKIKS RNAHMKTHRQ QEEQQRQKAQ BACU017985/1-1113 PSHSTTSGET DPTTIFPCKE CGKVFFKIKS RNAHMKTHRQ QEEQQRQKAQ 1151 1200 ENSTTRP00000013342/1-1185 KAAFAAEMAA TIERTTGPVG PPGLLPLDQL SLIKPIKDVD ILDDDVVQQL ENSP00000362013/1-1200 KAAFAAEMAA TIERTTGPVG APGLLPLDQL SLIKPIKDVD ILDDDVVQQL ENSBTAP00000020376/1-1210 KAAFAAEMAA TIERTTGPVG PQGLLPLDQL SLIKPIKDVD LLDDDVVQQL bmy_00079T0/1-1207 KAAFAAEMAA TIERTTGPVG PPGLLPLDQL SLIKPIKDVD ILDDDVVQQL BACU017985/1-1113 KAAFAAEMAA TIERTTGPVG PPGLLPLDQL SLIKPIKDVD ILDDDVVQQL 1201 1250 ENSTTRP00000013342/1-1185 GGVMEEAEVV DTGLLLDDQD SVLLQGDTEL ENSP00000362013/1-1200 GGVMEEAEVV DTDLLLDDQD SVLLQGDAEL ENSBTAP00000020376/1-1210 GGVMAEAEVV DTGLLLDDQA SVLLQGDTEL bmy_00079T0/1-1207 GGVMEEAEVV DTGLLLDDQD SVLLQGDTEL BACU017985/1-1113 GGVMEEAEVV DTGLLLDDQD SVLLQGDTEL