KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:11:00 2014 Check: 00 .. Name: ENSTTRP00000007560/1-436 Len: 514 Check: 4824 Weight: 1.00 Name: ENSBTAP00000020298/1-479 Len: 514 Check: 5467 Weight: 1.00 Name: bmy_00205T0/1-451 Len: 514 Check: 7711 Weight: 1.00 Name: BACU006954/1-451 Len: 514 Check: 7777 Weight: 1.00 // 1 50 ENSTTRP00000007560/1-436 GAAVPTRRPG GRG---RSMG TRVATRSRAR SRRHGA--GG LQGALPVALR ENSBTAP00000020298/1-479 -----MGQAG CKGLYQSLFD YKTEKYVIAK NKKVGLLYRL LQVSILTYLV bmy_00205T0/1-451 -----MGQAG CKGLYQSLLD YKTEKYVIAK NKKVGLLYRL LQVSILTYLV BACU006954/1-451 -----MGQAG CKGLYQSLLD YKTEKYVIAK NKKVGLLYRL LQVTILTYLV 51 100 ENSTTRP00000007560/1-436 LQDREVRHRQ EEGGPALPAA AGLHPDLPGG LGVPGEEVLP RHGHIPAEQH ENSBTAP00000020298/1-479 VWVFLVKKCY QDTDTSLQSS I--------- ---------- ----ITKVKG bmy_00205T0/1-451 VWVFLVKKCY QDTDSSLQSS I--------- ---------- ----ITKVKG BACU006954/1-451 VWVFLVKKCY QDTDSSLQSS I--------- ---------- ----VTKVKG 101 150 ENSTTRP00000007560/1-436 HHQSQGCDLH QHLRAWGAAL GCCRLCHPTP GRECLLCNHQ PGRDP-QRQE ENSBTAP00000020298/1-479 VTFTNTSELG ERL--WDVA- ---DYVIPPQ GENVFFVITN LVVTPNQRQE bmy_00205T0/1-451 VTFTNTSELG ERL--WDVA- ---DYVIPPQ GENVFFVITN LVVTPNQRQE BACU006954/1-451 VTFTNTSELG ERL--WDVA- ---DYVIPPQ GENVFFVITN LVVTPNQRQE 151 200 ENSTTRP00000007560/1-436 TCAESESIPD ALCYEDSDCP PGEPVVAGNG VRTGRCLRAG SEQKGTCEIF ENSBTAP00000020298/1-479 TCAESASVPD ALCYEDSDCP PGEPVAAGNG VRTGRCLREG SAQKGTCEIF bmy_00205T0/1-451 TCAESESIPD ALCCEDSDCP PGEPVVAGNG VRTGRCLRAG SEQKGTCEIF BACU006954/1-451 TCAESESIPD ALCCEDSDCP PGEPVVAGNG VRTGRCLRAG SEQKGTCEIF 201 250 ENSTTRP00000007560/1-436 AWCPVETKSR PAKPLLGEAE DFTVYIRNFI RFPKFNFSKT NVLDTTDRAF ENSBTAP00000020298/1-479 AWCPVETRSR PTKPLLGEAK DFTVYIKNFI RFPKFNFSKT NVLDTTDRTF bmy_00205T0/1-451 AWCPVETKSR PAKPLLGEAE DFTVYIKNFI RFPKFNFSKT NVLDTTDRAF BACU006954/1-451 AWCPVETKSR PAKPLLGEAE DFTVYIKNFI RFPKFNFSKT NVLDTTDRAF 251 300 ENSTTRP00000007560/1-436 LKSCKFGPKD PYCPIFRLGS VVSWTGSSFQ EIAVQXXXXX XXXXXXXXXD ENSBTAP00000020298/1-479 LKSCKFSPEN PYCPIFRLGS VVSWTGSNFQ EIAVQGGVIG IQIEWDCDLD bmy_00205T0/1-451 LKSCKYGPKD PYCPIFRLGS VVSWTGSSFQ EIAVQGGVIG IQIEWNCDLD BACU006954/1-451 LKSCKYGPKD PYCPIFRLGS VVSWTGSNFQ EIAVQGGVIG IQIEWDCDLD 301 350 ENSTTRP00000007560/1-436 RAPSECYPRY I--RL-NRF- QKTLFSGYNF RFAKYYRDAA GVELRTLFKA ENSBTAP00000020298/1-479 KAPSECYPRY YFNRLDNRFS GNSISSGYNF RFAKYYRDAA GVEFRTLFKA bmy_00205T0/1-451 RAPSECYPRY YFNRLDNRFS ENSLSSGYNF RFAKYYRDAA GVEFRTLFKA BACU006954/1-451 RAPSECYPHY YFNRLDNRFS ENSLSSGYNF RFAKYYRDAA GVEFRTLFKA 351 400 ENSTTRP00000007560/1-436 YGIRFDVMVN GK-------- ---------- ----GSFFCD LVLIYFIKKS ENSBTAP00000020298/1-479 YGIRFDVMVN GKAGKFNIIP TIINVGSGVA LMGVGSFFCD LVLIYFIKKS bmy_00205T0/1-451 YGIRFDVMVN GKAGKFNIIP TIINVGSGVA LMGVGSFFCD LVLIYFIKKS BACU006954/1-451 YGIRFDVMVN GKAGKFNIIP TVINVGSGVA LMGVGSFFCD LVLIYFIKKS 401 450 ENSTTRP00000007560/1-436 HFYRDKKYEE ARDLEVLARM AESSQQS-GP GPAGLAEQP- EVQDGGRAQE ENSBTAP00000020298/1-479 HFYRDKKYEE VRS-ELDSAS EQPAEEKATK GTQRLAASSG ELSVGRGRQR bmy_00205T0/1-451 HFYRDKKYEE VRDLEVLARM AESSQQSVAP DAAGLAEQP- EVQDGGSAQK BACU006954/1-451 HFYRDKKYEE VRDLEVLARM AESSQQSVAP DAAGLAEQP- EVQDGGGAQK 451 500 ENSTTRP00000007560/1-436 N--------- GCVCRQLLQ- ---------- ---------P ASRTHPHQD- ENSBTAP00000020298/1-479 SEPGREGRQV GAACQKLLQV ESALRETIPA PAVLCAPTCP HRSGHQGNGK bmy_00205T0/1-451 EN-------- GCVCGQLLQ- ---------- ---------P ARSGRQGNGK BACU006954/1-451 EN-------- GCVCRQLLQ- ---------- ---------P ARSGRQGNGK 501 550 ENSTTRP00000007560/1-436 ---------- ---- ENSBTAP00000020298/1-479 VNVEQLQSLQ TVEA bmy_00205T0/1-451 VNVEQLQNLQ TVEA BACU006954/1-451 VNVEQLQNLQ TVEA