KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:10:22 2014 Check: 00 .. Name: BACU008277/1-414 Len: 550 Check: 428 Weight: 1.00 Name: bmy_14018T0/1-463 Len: 550 Check: 7261 Weight: 1.00 Name: ENSP00000270593/1-426 Len: 550 Check: 2146 Weight: 1.00 Name: ENSTTRP00000010485/1-422 Len: 550 Check: 807 Weight: 1.00 Name: ENSBTAP00000020110/1-431 Len: 550 Check: 4996 Weight: 1.00 // 1 50 BACU008277/1-414 MNSTSAPKCH PQETECLHQL TTVIVSVSFV VGVVANGLVL WMTVFRMPRT bmy_14018T0/1-463 ---------- --MSRWGCGT DSGLSSASGC VEVAGPG--- ---------- ENSP00000270593/1-426 ---------- ---------- ---------- --MAGLG--- ---------- ENSTTRP00000010485/1-422 ---------- ---------- ---------- --MAGPG--- ---------- ENSBTAP00000020110/1-431 ---------- ---------- ---------- --MAGPG--- ---------- 51 100 BACU008277/1-414 FTTIWFFNLA LADFTVLLSL LITIQSVAIG QWLLNDVAFE LYMTFLALSF bmy_14018T0/1-463 -----FRGHP AG-----LLL LLPQ-ALTEG S--------- --PVFVAV-- ENSP00000270593/1-426 -----FWGHP AGPLLLLLLL VLPPRALPEG P--------- --LVFVAL-- ENSTTRP00000010485/1-422 -----FRGHP AG--LLLLLL LLPQ-ALTEG P--------- --LVFVAV-- ENSBTAP00000020110/1-431 -----FRGHP AGPLLLLLLL LLPP-ALTEG P--------- --LVFVAV-- 101 150 BACU008277/1-414 FTSICLLVLI SLDCCVFRHD DRAPLASYPT DPHKEAVSTP WPRGLGQLTG bmy_14018T0/1-463 ---------- -----VFCHG DRAPLASYPT DPHKEAVSTL WPRGLGQLTG ENSP00000270593/1-426 ---------- -----VFRHG DRAPLASYPM DPHKEVASTL WPRGLGQLTT ENSTTRP00000010485/1-422 ---------- -----VFRHG DRAPLASYPT DPHKEAVSTL WPRGLGQLTG ENSBTAP00000020110/1-431 ---------- -----VFRHG DRAPLASYPT DPHKEVASTL WPRGLGQLTE 151 200 BACU008277/1-414 EGVRQQLELG RFLRSRYEDF LSPKYRWEEV YIRSTDFDRT LESAQANLAG bmy_14018T0/1-463 EGVHQQLELG RFLRSRYEDF LSPEYRREEV YIRSTDFDRT LESAQANLAG ENSP00000270593/1-426 EGVRQQLELG RFLRSRYEAF LSPEYRREEV YIRSTDFDRT LESAQANLAG ENSTTRP00000010485/1-422 EGVRQQLELG RFLRSRYEDF LSPEYRREEV YIRSTDFDRT LESAQANLAG ENSBTAP00000020110/1-431 EGVRQQLELG RFLRSRYEDF LSPEYRREEV YIRSTDFDRT LESAQANLAG 201 250 BACU008277/1-414 LFPEAAPGRS EATWRPIPVH TVP------- ---------- ---------- bmy_14018T0/1-463 LFPEAAPGRS EATWRPIPVH TVPYTQ---- ------LSPY QELLRKATEA ENSP00000270593/1-426 LFPEAAPGSP EARWRPIPVH TVPVAEDKLL RFPMRSCPRY HELLREATEA ENSTTRP00000010485/1-422 LFPEAAPGRS EATWRPIPVH TVPVTEDKLL RFPTRSCPRY QELLREATEA ENSBTAP00000020110/1-431 LFPEAAPGRS EATWRPIPVH TVPVTEDKLL RFPTRSCPRY RELLREATEA 251 300 BACU008277/1-414 -SLRTRSGGW T--------- ---------- ---------- ---------- bmy_14018T0/1-463 AEYQTALEGW TDFLTHLENF TGLSLVGEPL RRAWKVLDTL ICQQAHGLPL ENSP00000270593/1-426 AEYQEALEGW TGFLSRLENF TGLSLVGEPL RRAWKVLDTL MCQQAHGLPL ENSTTRP00000010485/1-422 AEYQTALEGW TDFLTHLENF TGLSLVGEPL RRAWKVLDTL ICQQAHGLPL ENSBTAP00000020110/1-431 AEYKTALKGW TDFLTRLENF TGLPLVGEPL RKAWKVLDTL ICQQAHGLSL 301 350 BACU008277/1-414 ---------- ---------- ----GP---- ------GGIL LDAILADFSR bmy_14018T0/1-463 PSWASPDVLQ TLAQISALDT GAHVGPPGAA EKAQLSGGIL LDAILADFSR ENSP00000270593/1-426 PAWASPDVLR TLAQISALDI GAHVGPPRAA EKAQLTGGIL LNAILANFSR ENSTTRP00000010485/1-422 PSWASPDVLQ TLAQISALAI GAHVGPPGAA EKAQLSGGIL LDAILANFSR ENSBTAP00000020110/1-431 PSWASPDVLQ TLAQISALDI GAHVGPPQAA EKAQLSGGIL LDAILANFSR 351 400 BACU008277/1-414 VQHLGLPLKM VMYSARDSAL LALQGALGLY DGHTPPYAAC LGFEFRRRLG bmy_14018T0/1-463 VQHLGLPLKM VMYSAHDSTL LALQGALGLY DGHTPPYAAC LGFEFRRRLG ENSP00000270593/1-426 VQRLGLPLKM VMYSAHDSTL LALQGALGLY DGHTPPYAAC LGFEFRKHLG ENSTTRP00000010485/1-422 VQHLGLPLKM VMYSAHDST- LALQGALGLY DGHTPPYAAC LGFEFRRRLG ENSBTAP00000020110/1-431 VQRLGLPLKM VMYSAHDSTL LALQGALGLY DGHTPPYAAC LGFEFRRRLG 401 450 BACU008277/1-414 DPD------D DAG------- ---------- -----DVTIS LFYRNDSAGL bmy_14018T0/1-463 DPD------D DAGFQASSRD GKEGPGYHHL LSSSRDVTIS LFYRNDSAGL ENSP00000270593/1-426 NPA------K DGG------- ---------- -----NVTVS LFYRNDSAHL ENSTTRP00000010485/1-422 DPD------D DAG------- ---------- -----NVTIS LFYRNDSAGL ENSBTAP00000020110/1-431 DADRDNADGD HSG------- ---------- -----NVTVS LFYRNDSAGL 451 500 BACU008277/1-414 PLTLSLPGCP EACPLGRFRQ LTAPARSPAR GIPCHGFHEP A--TPAATVV bmy_14018T0/1-463 PLTLSLPGCP EACPLGRFRQ LTAP-RP--- ---ASGSRDP LPWLPRARHP ENSP00000270593/1-426 PLPLSLPGCP APCPLGRFYQ LTAPARPPAH GVSCHGPYEA A--IPPAPVV ENSTTRP00000010485/1-422 PLTLSLPGCP AACPLGRFRQ LTAPARPPAH GVPCHGFYEP A--APAATAV ENSBTAP00000020110/1-431 PLTLRLPGCP APCPLSRFRQ LTAPARPPAH GIPCHGSHEP A--TPAATVV 501 550 BACU008277/1-414 PLLAGAGAGL AAHSMGWACW PAEPAACGP- ----GGAPCE PRNRHPFPRS bmy_14018T0/1-463 RSHRGAPAGW GWGRAGSPQH GAVPAGLQSR LPADLGGPRE PRNRHPFPRS ENSP00000270593/1-426 PLLAGAVAVL VALSLGLGLL AWRPGCLRA- ----LGGPV- ---------- ENSTTRP00000010485/1-422 PLLAGAVAVL AALSTGLGLL ACRAGCLRA- ----WGRPV- ---------- ENSBTAP00000020110/1-431 PLLAGAVAVL AALSMGLGLL AWRPGCLRA- ----WGGPV- ----------