KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:09:57 2014 Check: 00 .. Name: ENSTTRP00000002632/1-706 Len: 742 Check: 669 Weight: 1.00 Name: ENSP00000338885/1-707 Len: 742 Check: 9496 Weight: 1.00 Name: ENSBTAP00000019988/1-707 Len: 742 Check: 1894 Weight: 1.00 Name: bmy_03247T0/1-626 Len: 742 Check: 3348 Weight: 1.00 Name: BACU017339/1-710 Len: 742 Check: 5433 Weight: 1.00 // 1 50 ENSTTRP00000002632/1-706 MDPDWGQRDV GWAALLVLFA ASLLTVLGWL L---QYARGL WLARARGGRG ENSP00000338885/1-707 MDPGWGQRDV GWAALLILFA ASLLTVFAWL L---QYARGL WLARARGDRG ENSBTAP00000019988/1-707 MDPGWGQRDV GWAALLILFA ASLLTVLGWL L---QYARGL WLARARGGRG bmy_03247T0/1-626 ---------- ---------- ---------- ---------- ---------- BACU017339/1-710 MGAG-GPAVL SVSALRTQPS RSRCRPASPS VSADESPPGS GGAPAVGGVG 51 100 ENSTTRP00000002632/1-706 PGPAL--AAE PAGSLRELGA WRSLLRLRAT RAGAPEEPGV RGLLASLFAF ENSP00000338885/1-707 PGPAL--AGE PAGSLRELGV WRSLLRLRAT RAGAAEEPGV RGLLASLFAF ENSBTAP00000019988/1-707 QGPAF--AAE PAVSLRELGV WRSLLRLRAT RAGAPEEPGV RGLLASLFAF bmy_03247T0/1-626 -MPTL----- ---------- ---------- ---LPQ---- ---------- BACU017339/1-710 RWPATNPAAE PAGSLRELGA WRSLLRLRAT RAGAPEEPGV RGLLASLFAF 101 150 ENSTTRP00000002632/1-706 KSFRENWQRA WVRALNEQAC RDGSSIQIAF EEVPQLPPKA SISHVTCTDQ ENSP00000338885/1-707 KSFRENWQRA WVRALNEQAC RNGSSIQIAF EEVPQLPPRA SISHVTCVDQ ENSBTAP00000019988/1-707 KSFRENWQRA WVRALNEQAC RDGSSIQIAF EEVPQLPPKA SISHVTCIDQ bmy_03247T0/1-626 ---------- ---------- ---SSIQIAF EEVPQLPPKA SISHVTCTDQ BACU017339/1-710 KSFRENWQRA WVRALNEQAC RDGSSIQIAF EEVPQLPPKA SISHVTCTDQ 151 200 ENSTTRP00000002632/1-706 SERTMVLHCQ LCAEEVMFPV SVTQQSPAAV SMETYHVTLT LPPTQLEVNL ENSP00000338885/1-707 SEHTMVLRCQ LSAEEVRFPV SVTQQSPAAV SMETYHVTLT LPPTQLEVNL ENSBTAP00000019988/1-707 SERTMVLHCQ LSAEEVMFPV SVTQQSPAAV SMETYHVTLT LPPTQLEVNL bmy_03247T0/1-626 SERTMVLHCQ LSAEEVMFPV SVTQQSPAAV SMETYHVTLT LPPTQLEVNL BACU017339/1-710 SERTMVLHCQ LSAEEVMFPV SVTQQSPAAV SMETYHVTLT LPPTQLEVNL 201 250 ENSTTRP00000002632/1-706 EEIPGEGLLV SWAFTDRPDL RLTVLPKLQN RERGEEQVEL STIEELIEDS ENSP00000338885/1-707 EEIPGEGLLI SWAFTDRPDL SLTVLPKLQA RERGEEQVEL STIEELIKDA ENSBTAP00000019988/1-707 EEILGEGLLV SWAFTDRPDL SLTVLPKLQA RERGEEQVEL STIEELIEDA bmy_03247T0/1-626 EEIPGEGLLV SWAFTDRPDL RLTVLPKLQN RERGEEQVEL STIEELIEDS BACU017339/1-710 EEIPGEGLLV SWAFTDRPDL RLTVLPKLQN RERGEEQVEL STIEELIEDS 251 300 ENSTTRP00000002632/1-706 IVSTQPAMMV NLRACSAPGG LVPSEKPPMV PQAQPAIPRP TRLFLRQLRA ENSP00000338885/1-707 IVSTQPAMMV NLRACSAPGG LVPSEKPPMM PQAQPAIPRP NRLFLRQLRA ENSBTAP00000019988/1-707 IVSTQPAMMV NLRACSALGG LVPSEKPPMA PQAQPSIPRP IRLFLRQLRA bmy_03247T0/1-626 IVSTQPAMMV NLRACSAPGG LVPSEKPPVV PQAQPAIPRP TRLFLRQLRA BACU017339/1-710 IVSTQPAMMV NLRACSAPGG LVPSEKPPVV PQAQPAIPRP TRLFLRQLRA 301 350 ENSTTRP00000002632/1-706 SHLGRELEGT GEVCCVAELD DPVQQKWTKP MRAGPEVEWS EDLALXXXXX ENSP00000338885/1-707 SHLGNELEGT EELCCVAELD NPMQQKWTKP ARAGSEVEWT EDLALDLGPQ ENSBTAP00000019988/1-707 SHLGGELEGT GEVCCVAELD NPMQQKWTKP TRAGPEVEWS EDLTLDLGPQ bmy_03247T0/1-626 SHLGCELEGT GEVCCVAELD NPMQQKWTKP MRAGPEVEWS EDLTLDLGPQ BACU017339/1-710 SHLGRELEGT GEVCCVAELD NPMQQKWTKP MRAGPEVEWS EDLTLDLGPQ 351 400 ENSTTRP00000002632/1-706 XXXXXXXXXX XXXXXXX--- ---------- ---------- -------XXX ENSP00000338885/1-707 SRELTLKVLR SSSCGDT--- ---------- ---------- -------ELL ENSBTAP00000019988/1-707 SRELTLKVLR SSSCGDT--- ---------- ---------- -------ELL bmy_03247T0/1-626 SRELILKVLR SSSCGDSEYG AGRSTSGWVL SGAWSWPQLT VPPLSPAEFL BACU017339/1-710 SRELILKVLR SSSCGDT--- ---------- ---------- -------EFL 401 450 ENSTTRP00000002632/1-706 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXL QYEEGSPRNL ENSP00000338885/1-707 GQATLPVGSP SRPLSRRQLC PLTPGPGKAL GPAATMAVEL HYEEGSPRNL ENSBTAP00000019988/1-707 GQATLSVASP SRPLSRRQVC PLTPGPGKAL GQAATMAIEL QYEEGSPQNL bmy_03247T0/1-626 GQATVSVASP SRPLSRRQVC PLTPGPGKAL GQAATMAVEL QYEEGSPRNL BACU017339/1-710 GQATVSVASP SRPLSRRQVC PLTPGPGKAL GQAATMAVEL QYEEGSPRNL 451 500 ENSTTRP00000002632/1-706 GTPTPST-RP SITHTKKIEL DRTIMPDGTI VTTVTTVQSR PRVDGKLDSP ENSP00000338885/1-707 GTPTSSTPRP SITPTKKIEL DRTIMPDGTI VTTVTTVQSR PRIDGKLDSP ENSBTAP00000019988/1-707 GTSTPSTPRP SITPTKKIEL DRTIMPDGTI VTTVTTVQSR PRVDGKLDSP bmy_03247T0/1-626 GTPTPSTPRP SITPTKKIEL DRTIMPDGTI VTTVTTVQSR PRVDGKLDSP BACU017339/1-710 GTPTPSTPRP SITPTKKIEL DRTIMPDGTI VTTVTTVQSR PRVDGKLDSP 501 550 ENSTTRP00000002632/1-706 SRSPSKVEVT EKTTTVLSES GGPSSTSHSS SPGESHLSNG LDPVAETAIR ENSP00000338885/1-707 SRSPSKVEVT EKTTTVLSES SGPSNTSHSS SPGDSHLSNG LDPVAETAIR ENSBTAP00000019988/1-707 SRSPSKVEVT EKTTTVLSES GGPSSTSHSS SPGESHLSNG LDPVAETAIR bmy_03247T0/1-626 SRSPSKVEVT EKTTTVLSES GGPSSTSHSS SPGESHLSNG LDPVAETAIR BACU017339/1-710 SRSPSKVEVT EKTTTVLSES GGPSSTSHSS SR-ESHLSNG LDPVAETAIR 551 600 ENSTTRP00000002632/1-706 QLTEPSGRAA KKTPTKRSTL IISGVSKVPI AQDELALSLG YAASLEASMQ ENSP00000338885/1-707 QLTEPSGRVA KKTPTKRSTL IISGVSKVPI AQDELALSLG YAASLEASVQ ENSBTAP00000019988/1-707 QLTEPSGRAA KKTPTKRSTL IISGVSKVPI AQDELALSLG YAASLDASIQ bmy_03247T0/1-626 QLTEPSGRAA KKTPTKRSTL IISGVSKVPI AQDELALSLG YAASLEASMQ BACU017339/1-710 QLTEPSGRAA KKTPTKRSTL IISGVSKVPI AQDELALSLG YAASLEASMQ 601 650 ENSTTRP00000002632/1-706 DDAGPSGGPS SPPSDPPAMS PGPLDALSSP TSVQEADETT RSDISERPSV ENSP00000338885/1-707 DDAGTSGGPS SPPSDPPAMS PGPLDALSSP TSVQEADETT RSDISERPSV ENSBTAP00000019988/1-707 DDAGPSGGPS SPPSDPPAMS PGPVDALSSP TSVQEADETT RSDISERPSV bmy_03247T0/1-626 DDAGPSGGPS SPPSDPPAMS PGPLDALSSP TSVQEADETT RSDISERPSV BACU017339/1-710 DDAGPSGGPS SPPSDPPAMS PGPLDALSSP TSVQEADETT RSDISERPSV 651 700 ENSTTRP00000002632/1-706 DDVESETGST GALETRSLKD HKVSFLRSGT KLIFRRRPRQ KEAGLSQSHD ENSP00000338885/1-707 DDIESETGST GALETRSLKD HKVSFLRSGT KLIFRRRPRQ KEAGLSQSHD ENSBTAP00000019988/1-707 DDVESETGST GALETRSLKD HKVSFLRSGT KLIFRRRPRQ KEAGLSQSHD bmy_03247T0/1-626 DDVESETGST GALETRSLKD HKVSFLRSGT KLIFRRRPRQ KEAGLSQSHD BACU017339/1-710 DDVESETGST GALETRSLKD HKVSFLRSGT KLIFRRRPRQ KEAGLSQSHD 701 750 ENSTTRP00000002632/1-706 DLSNATATPS VRKKAGSFSR RLIKRFSFKS KPKANGNPSP QL ENSP00000338885/1-707 DLSNATATPS VRKKAGSFSR RLIKRFSFKS KPKANGNPSP QL ENSBTAP00000019988/1-707 DLSNTATTPS VRKKAGSFSR RLIKRFSFKS KPKANGNPSP QL bmy_03247T0/1-626 DLSNTTATPS VRKKAGSFSR RLIKRFSFKS KPKANGNPSP QL BACU017339/1-710 DLSNTTATPS VRKKAGSFSR RLIKRFSFKS KPKANGNPSP QL