KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:09:35 2014 Check: 00 .. Name: ENSP00000355675/1-439 Len: 445 Check: 4728 Weight: 1.00 Name: ENSBTAP00000019857/1-429 Len: 445 Check: 4996 Weight: 1.00 Name: bmy_03326T0/1-291 Len: 445 Check: 8379 Weight: 1.00 Name: ENSTTRP00000012286/1-427 Len: 445 Check: 9732 Weight: 1.00 // 1 50 ENSP00000355675/1-439 MTNMSWSFLT RLLEEIHNHS TFVGKVWLTV LVVFRIVLTA VGGEAIYSDE ENSBTAP00000019857/1-429 MTNMSWSFLT RLLEEIHNHS TFVGKVWLTV LVVFRIVLTA VGGESIYSDE bmy_03326T0/1-291 MTNMSWSFLT RLLEEIHNHS TFVGKVWLTV LVVFRIVLTA VGGESIYSDE ENSTTRP00000012286/1-427 MTNMSWSFLT RLLEEIHNHS TFVGKVWLTV LVVFRIVLTA VGGESIYSDE 51 100 ENSP00000355675/1-439 QAKFTCNTRQ PGCDNVCYDA FAPLSHVRFW VFQIVVISTP SVMYLGYAVH ENSBTAP00000019857/1-429 QTKFTCNTRQ PGCDNVCYDA FAPLSHVRFW VFQIVVISTP SVMYLGYAVH bmy_03326T0/1-291 QTKFTCNTRQ PGCDNVCYDA FAPLSHVRFW VFQIVVISTP SVMYLGYAVH ENSTTRP00000012286/1-427 QTKFTCNTRQ PGCDNVCYDA FAPLSHVRFW VFQIVVISTP SVMYLGYAVH 101 150 ENSP00000355675/1-439 RLARASEQER RRALRRRPGP RRAPRAHL-- -PPPHAGWPE PADLGEEEPM ENSBTAP00000019857/1-429 RLARASQDER RRASRRRPS- RRAPRPPLPL PPPPHPGWPE PADLGEEEPM bmy_03326T0/1-291 RLARASQDER RRASRRRPG- RLVPRAPLPL PPPPHPGWPE PADLGEEEPM ENSTTRP00000012286/1-427 RLARASQDER RRASRRRQG- RLAPRAPLP- -PPPHPGWPE PTDLGEEEPM 151 200 ENSP00000355675/1-439 LGLGEEEEEE ETGAAEGAGE --EAEEAGAE EACTKAVGAD GKAAGTPGPT ENSBTAP00000019857/1-429 LGLG--EEDE DPGVAEGLGE DEEAEDTGA- ---AKGAGGD TKVAGVPGPA bmy_03326T0/1-291 LGLG--EEDE EPGAAEGLGE DDEAEDAGA- ---AKGAGGD PKATGVPGPA ENSTTRP00000012286/1-427 LGLG--EEDE DPGAAEGLGE DDEAEDVGA- ---AKGAGGD TKATGVPGPA 201 250 ENSP00000355675/1-439 GQHDGRRRIQ REGLMRVYVA QLVARAAFEV AFLVGQYLLY GFEVRPFFPC ENSBTAP00000019857/1-429 GQHDGRRRIQ REGLMRVYVA QLVARAAFEV AFLVGQYLLY GFEVRPFFAC bmy_03326T0/1-291 GQHDGRRRIQ REGLMRVYVA QL-------- ---------- ---------- ENSTTRP00000012286/1-427 GQHDGRRRIQ REGLMRVYVA QLVARAAFEV AFLVGQYLLY GFEVRPFFAC 251 300 ENSP00000355675/1-439 SRQPCPHVVD CFVSRPTEKT VFLLVMYVVS CLCLLLNLCE MAHLGLGSAQ ENSBTAP00000019857/1-429 SRQPCPHVVD CFVSRPTEKT VFLLVMYVVS CLCLLLNLCE MAHLGLGNAQ bmy_03326T0/1-291 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012286/1-427 SRQPCPHVVD CFVSRPTEKT VFLLVMYVVS CLCLVLNLCE MAHLGLGSAQ 301 350 ENSP00000355675/1-439 DAVRGRRGPP ASAPAPAPRP PPCAFPAAAA GLACPPDYSL VVRAAERARA ENSBTAP00000019857/1-429 DAVRGRRPLP AS-PGPMPRP PPCALPAAPS GLACPPDYSL VVRTAERARA bmy_03326T0/1-291 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000012286/1-427 DAVRSRHPLP TT-PGPMPRQ QPCGLPAAPS GLACPPDYSL VVRAAERART 351 400 ENSP00000355675/1-439 HDQNLANLAL QALRDGAAAG DRDRDSSPCV GLPAASRGPP RAGAPASRTG ENSBTAP00000019857/1-429 QDQELASLAL QALQDRRALG DLDSPPGP-- GLPANARGPP KPGAPASGSG bmy_03326T0/1-291 ---------- -ALQDQRSLG DLDSPPGP-- GLPATTRGPP RAGAPASGSG ENSTTRP00000012286/1-427 HDQDLANLAL QALQDRRSLG DLDSPPGP-- GLPATARGPP RASAPASGSG 401 450 ENSP00000355675/1-439 SATSAGTVGE QGRPGTHERP GAKPRAGSEK GSA-SSRDGK TTVWI ENSBTAP00000019857/1-429 SATSGGTVGG QG------RQ GIKPRMGSEK GSGSSSREGK TTVWI bmy_03326T0/1-291 SATSGGTAGG QG------RP GAKPRMGSEK GSGSSSREGK TTVWI ENSTTRP00000012286/1-427 SATSGGTAGG QG------RP GAKPRMGSEK GSASSSREGK TTVWI