KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:09:18 2014 Check: 00 .. Name: ENSTTRP00000008965/1-394 Len: 585 Check: 5180 Weight: 1.00 Name: ENSP00000314508/1-536 Len: 585 Check: 7541 Weight: 1.00 Name: bmy_03384T0/1-585 Len: 585 Check: 8648 Weight: 1.00 Name: ENSBTAP00000019765/1-536 Len: 585 Check: 6682 Weight: 1.00 // 1 50 ENSTTRP00000008965/1-394 ---------- ---------- ---------- ---------- ---------M ENSP00000314508/1-536 ---------- ---------- ---------- ---------- ---------M bmy_03384T0/1-585 MTHPLHFAGI NPQGSSGAYS YLRLLHPCFY LADTLSLRGL GTPQSSHLVM ENSBTAP00000019765/1-536 ---------- ---------- ---------- ---------- ---------M 51 100 ENSTTRP00000008965/1-394 VFSSPSREEC PKPQDRVGIM APSLMGLLLL QAVSWASHLQ P--------- ENSP00000314508/1-536 EFSSPSREEC PKPLSRVSIM AGSLTGLLLL QAVSWASGAR PCIPKSFGYS bmy_03384T0/1-585 ELSSPSREEC PKPRDRVGIL APSLMGLLLL QAVSWASGAH PCSPKSFGYS ENSBTAP00000019765/1-536 ELSSPSREEY PMPRGRVGIM AASLMGLLLL HTVSWVSGAR PCSPKSFGYS 101 150 ENSTTRP00000008965/1-394 ---------- ---LEHTQWA PNGAES---- ---------- -GTIQANRTG ENSP00000314508/1-536 SVVCVCNATY CDSFDPPTFP ALGTFSRYES TRSGRRMELS MGPIQANHTG bmy_03384T0/1-585 SVVCVCNATY CDSLDPLTLP DPGTFSRFES TRSGRRMELS LGTIQANRTG ENSBTAP00000019765/1-536 SVVCVCNGTY CDSLDPLTLP DPGTFSRFES TRSGRRMELS LGTIQANRTG 151 200 ENSTTRP00000008965/1-394 T--------- ---------- ---------- ---------- ---------- ENSP00000314508/1-536 TGLLLTLQPE QKFQKVKGFG GAMTDAAALN ILALSPPAQN LLLKSYFSEE bmy_03384T0/1-585 TGLLLTLQPD QKFQKVKGFG GAMTDAAALN ILALSPPARD LLLKSYFSKE ENSBTAP00000019765/1-536 TGLLLTLQPD QKFQKVKGFG GAMTDAAALN ILALSPAARN LLLKSYFSEE 201 250 ENSTTRP00000008965/1-394 GIEYNIMRVP MASCDFSIRT YTYADTPDDF QLLNFSLPEE DVKLKIPLIH ENSP00000314508/1-536 GIGYNIIRVP MASCDFSIRT YTYADTPDDF QLHNFSLPEE DTKLKIPLIH bmy_03384T0/1-585 GVEYNIMRVP MASCDFSIRT YTYADTPDDF QLLNFSLPEE DVKLKIPLIH ENSBTAP00000019765/1-536 GIEYNIIRVP MASCDFSIRT YTYDDSPDDF QLLNFSLPEE DVKLKIPLIH 251 300 ENSTTRP00000008965/1-394 RALELAQRPV SLFASPWTSP TWLKTNGAVN GKGTLKGHPG DLYHQTWARY ENSP00000314508/1-536 RALQLAQRPV SLLASPWTSP TWLKTNGAVN GKGSLKGQPG DIYHQTWARY bmy_03384T0/1-585 QALELAQRPV SLFASPWTSP TWLKTNGAVN GKGTLKGHPG DLYHQTWARY ENSBTAP00000019765/1-536 QALELANRSV SLFASPWTSP TWLKTNGAVN GKGTLKGQAG DLYHKTWARY 301 350 ENSTTRP00000008965/1-394 FVKFLDAYAE HKLQFWAVTA ENEPSAGLFS GYPFQCLGFT PEHQRDFIAR ENSP00000314508/1-536 FVKFLDAYAE HKLQFWAVTA ENEPSAGLLS GYPFQCLGFT PEHQRDFIAR bmy_03384T0/1-585 FVKFLDAYAE HKLQFWAVTA ENEPSAGLFS GYPFQCLGFT PEHQRDFIAR ENSBTAP00000019765/1-536 FVKFLDAYAE HKLRFWAVTA ENEPTAGLLT GYPFQCLGFT PEHQRDFIAR 351 400 ENSTTRP00000008965/1-394 DLGPTLANST HRNVRLLMLD DQRLLLPHWA QVVLADPEAA KGLCGLQV-- ENSP00000314508/1-536 DLGPTLANST HHNVRLLMLD DQRLLLPHWA KVVLTDPEAA KYVHGIAVHW bmy_03384T0/1-585 DLGPTLANST HRNVRLLMLD DQRLLLPHWA QVVLADPEAA KYVHGIAVHW ENSBTAP00000019765/1-536 DLGPILANST HRDVRLLMLD DQRLLLPRWA QVVLADPEAA KYVHGIAVHW 401 450 ENSTTRP00000008965/1-394 ----LGAERA A--------- -GLLGSRDAV QPQHHHEPPL PCGRLDL--- ENSP00000314508/1-536 YLDFLAPAKA TLGETHRLFP NTMLFASEAC VGSKFWEQSV RLGSWDRGMQ bmy_03384T0/1-585 YLDFLAPAKA TLGETHRLFP DTMLFASEAC VGSKFWEQSV RLGSWDRGVQ ENSBTAP00000019765/1-536 YLDFLAPANA TLGETHRLFP NTMLFASEAC VGSKFWEQSV RLGSWDRGMR 451 500 ENSTTRP00000008965/1-394 ---------- ---------- ---------- -------EPI IVDIAKDTFY ENSP00000314508/1-536 YSHSIITNLL YHVVGWTDWN LALNPEGGPN WVRNFVDSPI IVDITKDTFY bmy_03384T0/1-585 YSHSIITNLL YHVVGWTDWN LALNPEGGPN WVRNFVDSPI IVDIAKDTFY ENSBTAP00000019765/1-536 YSHSIITNLL YHVVGWTDWN LALNPEGGPN WVRNFVDSPI IVDIAKDTFY 501 550 ENSTTRP00000008965/1-394 KQPMFYHLGH FSKFIPEGSQ RVGLVASEKN DLDTVALIHP DGSAVVVVLN ENSP00000314508/1-536 KQPMFYHLGH FSKFIPEGSQ RVGLVASQKN DLDAVALMHP DGSAVVVVLN bmy_03384T0/1-585 KQPMFYHLGH FSKFIPEGSQ RVGLVASEKN DLDTVALIHP DGSAVVVVLN ENSBTAP00000019765/1-536 KQPMFYHLGH FSKFIPEGSQ RVGLVASKKS DLDTVALLRP DGSAVAVVLN 551 600 ENSTTRP00000008965/1-394 RSSKDVPLTI KDPAVGFVEA ISPGYSIHTY LWRRQ ENSP00000314508/1-536 RSSKDVPLTI KDPAVGFLET ISPGYSIHTY LWRRQ bmy_03384T0/1-585 RSSKDVPLTI KDPAVGFVET ISPGYSIHTY LWRRQ ENSBTAP00000019765/1-536 RSSKDVPLTI KDPAVGFMET VSPGYSIHTY LWRRQ