KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:59 2014 Check: 00 .. Name: BACU006949/1-1031 Len: 1160 Check: 6590 Weight: 1.00 Name: ENSP00000353072/1-1052 Len: 1160 Check: 6695 Weight: 1.00 Name: ENSTTRP00000005543/1-1060 Len: 1160 Check: 943 Weight: 1.00 Name: bmy_00211T0/1-1067 Len: 1160 Check: 9649 Weight: 1.00 Name: ENSBTAP00000019703/1-999 Len: 1160 Check: 3885 Weight: 1.00 // 1 50 BACU006949/1-1031 ---------- --MGTAGWRW QWKPEEG--- ---------- ---------- ENSP00000353072/1-1052 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005543/1-1060 GRCRHCRRGR SQRGPGLARR PWGPEPP--- -APRSVALQR GGPDCADGAD bmy_00211T0/1-1067 -----PGPPP PLPSGKVPVR SWPRAAPVGA RAPRTVAPRR GDPGCADGAD ENSBTAP00000019703/1-999 ---------- ---------- ---------- ---------- ---------- 51 100 BACU006949/1-1031 --GCGLAQAH LGARNLP-AQ IQRAYQDSDP FPLYKASLFL LGTVPGLSGL ENSP00000353072/1-1052 -----MEA-- --AHLLPAAD VLRHF----- ---------- --SVTAEGGL ENSTTRP00000005543/1-1060 CRGGGMEEAE AQAHLLPAAD VLRRF----- ---------- --SVTAEGGL bmy_00211T0/1-1067 CRGGGMEK-- --AHLLPAAD VLRRF----- ---------- --SVTAEGGL ENSBTAP00000019703/1-999 -----MEE-- --AHLLPAAD VLRRF----- ---------- --SVTAEGGL 101 150 BACU006949/1-1031 RVQPVQG--E KTGEDDSGVF PGKSLWELVL EQFEDLLVRI LLLAALVSFV ENSP00000353072/1-1052 SPAQVTGARE RYGPNELPSE EGKSLWELVL EQFEDLLVRI LLLAALVSFV ENSTTRP00000005543/1-1060 SPEQVTGARE RYGPNELPTE EGKSLWELVL EQFEDLLVRI LLLAALVSFV bmy_00211T0/1-1067 SPEQVTGARE RYGPNELPTE EGKSLWELVL EQFEDLLVRI LLLAALVSFV ENSBTAP00000019703/1-999 SAEQVTGARE RYGPNELPTE EGKSLWELVL EQFEDLLVRI LLLAALVSFV 151 200 BACU006949/1-1031 LAWFEEDEET TTAFVEPLVI MLILVANAIV GVWQERNAES AIEALKEYEP ENSP00000353072/1-1052 LAWFEEGEET TTAFVEPLVI MLILVANAIV GVWQERNAES AIEALKEYEP ENSTTRP00000005543/1-1060 LAWFEEGEET TTAFVEPLVI MLILVANAIV GVWQERNAES AIEALKEYEP bmy_00211T0/1-1067 LAWFEEGEET TTAFVEPLVI MLILVANAIV GVWQERNAES AIEALKEYEP ENSBTAP00000019703/1-999 LAWFEEGEET TTAFVEPLVI MLILVANAIV GVWQERNAES AIEALKEYEP 201 250 BACU006949/1-1031 EMGKVIRSDR KGVQRIRARD IVPGDIVEVA VGDKVPADLR LIEIKSTTLR ENSP00000353072/1-1052 EMGKVIRSDR KGVQRIRARD IVPGDIVEVA VGDKVPADLR LIEIKSTTLR ENSTTRP00000005543/1-1060 EMGKVIRSDR KGVQRIRARD IVPGDIVEVA VGDKVPADLR LIEIKSTALR bmy_00211T0/1-1067 EMGKVIRSDR KGVQRIRARD IVPGDIVEVA VGDKVPADLR LIEIKSTTLR ENSBTAP00000019703/1-999 EMGKVIRADR KGVQRILARD IVPGDIVEVA VGDKVPADLR LIDIKSTTLR 251 300 BACU006949/1-1031 VDQSILT--- ---------- ---------- -------GES VSVTKHTDAI ENSP00000353072/1-1052 VDQSILT--- ---------- ---------- -------GES VSVTKHTEAI ENSTTRP00000005543/1-1060 VDQSILT--- ---------- ---------- -------GES VSVTKHTDAI bmy_00211T0/1-1067 VDQSILTGEA WRPGPGVARP GDRGTFTWGF SFLIPHPGES VSVTKHTDAI ENSBTAP00000019703/1-999 VDQSILT--- ---------- ---------- -------GES VSVTKHTDAI 301 350 BACU006949/1-1031 PDPRAVNQDK KNMLFSGTNI ASGKAMGVAV ATGLHTELGK IRSQMAAMAP ENSP00000353072/1-1052 PDPRAVNQDK KNMLFSGTNI TSGKAVGVAV ATGLHTELGK IRSQMAAVEP ENSTTRP00000005543/1-1060 PDPRAVNQDK KNMLFSGTNI ASGKAMGVAV ATGLHTELGK IRSQMAAMAP bmy_00211T0/1-1067 PDPRAVNQDK KNMLFSGTNI ASGKAMGVAV ATGLHTELGK IRSQMAAMAP ENSBTAP00000019703/1-999 PDPRAVNQDK KNMLFSGTNI ASGKAVGVAV ATGLHTELGK IRSQMAAVEP 351 400 BACU006949/1-1031 ERTPLQQKLD EFGQQLSRAI SVICMAVWVI NIGHFADPAH GGSWLRGAVY ENSP00000353072/1-1052 ERTPLQRKLD EFGRQLSHAI SVICVAVWVI NIGHFADPAH GGSWLRGAVY ENSTTRP00000005543/1-1060 ERTPLQQKLD EFGQQLSRAV SVVCVAVWVI NIGHFADPAH GGSWLRGAVY bmy_00211T0/1-1067 ERTPLQQKLD EFGQQLSRAI SVICMAVWLI NIGHFADPAH GGSWLRGAVY ENSBTAP00000019703/1-999 ERTPLQQKLD EFGQQLSRAI SVICMAVWVI NIGHFADPAH GGSWLRGAVY 401 450 BACU006949/1-1031 YFKIAVALAV AAIPEGLPAV ITTCLALGTR RMARKNAIVR SLPSVETLGC ENSP00000353072/1-1052 YFKIAVALAV AAIPEGLPAV ITTCLALGTR RMARKNAIVR SLPSVETLGC ENSTTRP00000005543/1-1060 YFKIAVALAV AAIPEGLPAV ITTCLALGTR RMARKNAIVR SLPSVETLGC bmy_00211T0/1-1067 YFKIAVALAV AAIPEGLPAV ITTCLALGTR RMARKNAIVR SLPSVETLGC ENSBTAP00000019703/1-999 YFKIAVALAV AAIPEGLPAV ITTCLALGTR RMARKNAIVR SLPSVETLGC 451 500 BACU006949/1-1031 TSVICSDKTG TLTTNQMSVC RMFVVAEAEA GTCSLHEFTI SGTTYAPEGE ENSP00000353072/1-1052 TSVICSDKTG TLTTNQMSVC RMFVVAEADA GSCLLHEFTI SGTTYTPEGE ENSTTRP00000005543/1-1060 TSVICSDKTG TLTTNQMSVC RMFVVAEAEA GTCSLHEFTI SGTTYAPEGE bmy_00211T0/1-1067 TSVICSDKTG TLTTNQMSVC RMFVVAEAEA GTCSLHEFTI SGTTYAPEGE ENSBTAP00000019703/1-999 TSVICSDKTG TLTTNQMSVC RMFVVAEAGT GTCRLHEFTI SGTTYAPEGE 501 550 BACU006949/1-1031 VRLGEWPVCC GQFDGLVELA TICALCNDSA LDYNEAKGVY EKVGEATETA ENSP00000353072/1-1052 VRQGDQPVRC GQFDGLVELA TICALCNDSA LDYNEAKGVY EKVGEATETA ENSTTRP00000005543/1-1060 VRLGGWPVCC GQFDALAELA TICALCNDSA LDYNEAKGVY EKVGEATETA bmy_00211T0/1-1067 VRLGEWPVCC GQFDGLVELA TICALCNDSA LDYNEAKGVY EKVGEATETA ENSBTAP00000019703/1-999 VRQGERRVRC GQFDGLVELA TICALCNDSA LDYNEAKGVY EKVGEATETA 551 600 BACU006949/1-1031 LTCLVEKMNV FDTDLQALSR VERAGACNAV IKQLMRKEFT LEFSRDRKSM ENSP00000353072/1-1052 LTCLVEKMNV FDTDLQALSR VERAGACNTV IKQLMRKEFT LEFSRDRKSM ENSTTRP00000005543/1-1060 LTCLVEKMNV FDTDLEALSR VERAGACNAV IKQLMRKEFT LEFSRDRKSM bmy_00211T0/1-1067 LTCLVEKMNV FDTDLQALSR VERAGACNAV IKQLMRKEFT LEFSRDRKSM ENSBTAP00000019703/1-999 LTCLVEKMNV FDTDLQTLSR VERAGACNAV IKQLMQKEFT LEFSRDRKSM 601 650 BACU006949/1-1031 SVYCTPTHPG LAAQGSKMFV KGAPESVIER CSSVRVGSRT VSLNTTSREQ ENSP00000353072/1-1052 SVYCTPTRPH PTGQGSKMFV KGAPESVIER CSSVRVGSRT APLTPTSREQ ENSTTRP00000005543/1-1060 SVYCTPTHPG LAAQGSKMFV KGAPESVIER CSSVRVGSRT VSLNTTSREQ bmy_00211T0/1-1067 SVYCTPTHPG LAVQGSKMFV KGAPESVIER CSSVRVGSRT VSLNTTSREQ ENSBTAP00000019703/1-999 SVYCTPTRPG LVAQGSKMFV KGAPESVIER CSSVRVGSRT VPLDTTSREQ 651 700 BACU006949/1-1031 ILAKIRDWGS GSDTLRCLAL ATRDAPPRKE DMQLDDCSKF VQYETDLTFV ENSP00000353072/1-1052 ILAKIRDWGS GSDTLRCLAL ATRDAPPRKE DMELDDCSKF VQYETDLTFV ENSTTRP00000005543/1-1060 ILAKIRDWSS GSDTLRCLAL ATRDAPPRKE DMQLDDCSKF VQYETDLTFV bmy_00211T0/1-1067 ILAKIRDWGS GSDTLRCLAL ATRDAPPRKE DMQLDDCSKF VQYETDLTFV ENSBTAP00000019703/1-999 ILAKVKDWGS GLDTLRCLAL ATRDMPPRKE DMQLDDCSKF VQYETDLTFV 701 750 BACU006949/1-1031 GCVGMLDPPR PEVAACISRC RQAGIRVVMI TGDNKGTAVA ICRRLGIFKD ENSP00000353072/1-1052 GCVGMLDPPR PEVAACITRC YQAGIRVVMI TGDNKGTAVA ICRRLGIFGD ENSTTRP00000005543/1-1060 GCVGMLDPPR PEVAACISRC HQAGIRVVMI TGDNKGTAVA ICRRLGILKD bmy_00211T0/1-1067 GCVGMLDPPR PEVAACISRC HQAGIRVVMI TGDNKGTAVA ICHRLGIFKD ENSBTAP00000019703/1-999 GCVGMLDPPR PEVAACIARC HQAGIRVVMI TGDNKGTAVA ICRRLGIFED 751 800 BACU006949/1-1031 TEDVAGKAYT GREFDDLSPE QQRHACRTAR CFARVEPAHK SRIVENLQSF ENSP00000353072/1-1052 TEDVAGKAYT GREFDDLSPE QQRQACRTAR CFARVEPAHK SRIVENLQSF ENSTTRP00000005543/1-1060 TEDVAGKAYT GREFDDLSPE QQRCACRTAC CFARVEPAHK SRIVENLQSF bmy_00211T0/1-1067 TEDVAGKAYT GREFDDLSPE QQRHACRTAR CFARVEPAHK SRIVENLQSF ENSBTAP00000019703/1-999 TEDVAGKAYT GREFDDLSPE QQRHACRTAR CFARVEPTHK SRIVENLQSF 801 850 BACU006949/1-1031 NEITAMTGDG VNDAPALKKA EIGIAMGSGT AVAKSAAEMV LSDDNFASIV ENSP00000353072/1-1052 NEITAMTGDG VNDAPALKKA EIGIAMGSGT AVAKSAAEMV LSDDNFASIV ENSTTRP00000005543/1-1060 NEITAMTGDG VNDAPALKKA EIGIAMGSGT AVAKSAAEMV LSDDNFASIV bmy_00211T0/1-1067 NEITAMTGDG VNDAPALKKA EIGIAMGSGT AVAKSAAEMV LSDDNFASIV ENSBTAP00000019703/1-999 NEITAMTGDG VNDAPALKKA EIGIAMGSGT AVAKSAAEMV LSDDNFASIV 851 900 BACU006949/1-1031 AAVEEGRAIY SNMKQFIRYL ISSNVGEVVC IFVTAILGLP EALIPVQLLW ENSP00000353072/1-1052 AAVEEGRAIY SNMKQFIRYL ISSNVGEVVC IFLTAILGLP EALIPVQLLW ENSTTRP00000005543/1-1060 AAVEEGRAIY SNMKQFIRYL ISSNVGEVVC IFVTAILGLP EALIPVQLLW bmy_00211T0/1-1067 AAVEEGRAIY SNMKQFIRYL ISSNVGEVVC IFVTAILGLP EALIPVQLLW ENSBTAP00000019703/1-999 AAVEEGRAIY SNMKQFIRYL ISSNVGEVVC IFLTAILGLP EALIPVQLLW 901 950 BACU006949/1-1031 VNLVTDGLPA TALGFNPPDL DIMEKRPRNP REALISGWLF FRYLAIGVYV ENSP00000353072/1-1052 VNLVTDGLPA TALGFNPPDL DIMEKLPRSP REALISGWLF FRYLAIGVYV ENSTTRP00000005543/1-1060 VNLVTDGLPA TALGFNPPDL DIMEKRPRNP REALISGWLF FRYLAIGVYV bmy_00211T0/1-1067 VNLVTDGLPA TALGFNPPDL DIMEKRPRNP REALISGWLF FRYLAIGGRR ENSBTAP00000019703/1-999 VNLVTDGLPA TALGFNPPDL DIMEKRPRNP REALISGWLF FRYLAIGVYV 951 1000 BACU006949/1-1031 GLATVAA--A TWWFLYDAEG PQVTFYQLRN FLKCSEDNPL FAGTECEVFE ENSP00000353072/1-1052 GLATVAA--A TWWFVYDAEG PHINFYQLRN FLKCSEDNPL FAGIDCEVFE ENSTTRP00000005543/1-1060 GLATVAA--A TWWFLYDAEG PQVTFYQLRN FLKCSEDNPL FAGTECEVFE bmy_00211T0/1-1067 AQERDPDFLA TLWS------ --------RN FLKCSEDNPL FAGTECEVFE ENSBTAP00000019703/1-999 GLATVAA--A TWWFLYDAEG PQVTFYQLRN FLKCSEDNPV FAGIDCEVFE 1001 1050 BACU006949/1-1031 SRFPTTMALS VLVTIEMCNA LNSVSENQSL LRMPPWLNPW LLAAVAMSMA ENSP00000353072/1-1052 SRFPTTMALS VLVTIEMCNA LNSVSENQSL LRMPPWMNPW LLVAVAMSMA ENSTTRP00000005543/1-1060 SRFPTTMALS VLVTIEMCNA LNSVSENQSL LRMPPWLNPW LLVAVAMSMA bmy_00211T0/1-1067 SRFPTTMALS VLVTIEMCNA LNSVSENQSL LRMPPWLNPW LLAAVAMSMA ENSBTAP00000019703/1-999 SRFPTTMALS VLVTIEMCNA LNSVSENQSL LRMPPWLNPW LLAAVAMSMA 1051 1100 BACU006949/1-1031 LHFLILLVPP LPLIFQVTPL SGRQWVVVLQ ISLPVILLDE ALKYLSRKHV ENSP00000353072/1-1052 LHFLILLVPP LPLIFQVTPL SGRQWVVVLQ ISLPVILLDE ALKYLSRNHM ENSTTRP00000005543/1-1060 LHFLILLVPP LPLIFQVTPL SGHQWVVVLQ ISLPVILLDE AFKYLSRKHV bmy_00211T0/1-1067 LHFLILLVPP LPLIFQVTPL SGRQWVVVLQ ISLPVILLDE ALKYLSRKHV ENSBTAP00000019703/1-999 LHFLILLVPP LPLIFQVTPL NGRQWVAVLQ ISLPVILLDE ALKYLSRKHV 1101 1150 BACU006949/1-1031 D--------- ---------- ---------- ---------- ---------- ENSP00000353072/1-1052 HACLYPGLLR TVSQAWSRQP LTTSWTPDHT GLASLGQGHS IVSLSELLRE ENSTTRP00000005543/1-1060 DAFYAGILVS ---------- ---------- ---------- ---------- bmy_00211T0/1-1067 D--------- ---------- ---------- ---------- ---------- ENSBTAP00000019703/1-999 D--------- ---------- ---------- ---------- ---------- 1151 1200 BACU006949/1-1031 -------GE- ENSP00000353072/1-1052 GGSREEMSQK ENSTTRP00000005543/1-1060 -------QFK bmy_00211T0/1-1067 ----EEKGQK ENSBTAP00000019703/1-999 ----EDKGQQ