KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:44 2014 Check: 00 .. Name: ENSTTRP00000011545/1-529 Len: 536 Check: 6332 Weight: 1.00 Name: ENSP00000266068/1-530 Len: 536 Check: 7096 Weight: 1.00 Name: ENSBTAP00000019648/1-536 Len: 536 Check: 7712 Weight: 1.00 Name: BACU011237/1-512 Len: 536 Check: 280 Weight: 1.00 Name: bmy_14487T0/1-289 Len: 536 Check: 6148 Weight: 1.00 // 1 50 ENSTTRP00000011545/1-529 MATPDVSVHM EEVVVVTTPD TAADGSGMEE VKTVLVTTNL APHGSDLTEG ENSP00000266068/1-530 MATPDVSVHM EEVVVVTTPD TAVDGSGVEG VKTVLVTTNL APHGGDLTED ENSBTAP00000019648/1-536 MATPDVSVHM EEVVVVTTPD TAADGSGVEE VKTVLVTTNL APHGGDLMED BACU011237/1-512 MATPDVSVHM EEVVVVTTPD TAADGSGVEE VKTVLVTTNL TPHGSDLTEG bmy_14487T0/1-289 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011545/1-529 NMETENAAAA AAAAFTASSQ LKEAVLVKMA EEEESLEAEI VYPITCGDSR ENSP00000266068/1-530 NMETENAAAA AAAAFTASSQ LKEAVLVKMA EEGENLEAEI VYPITCGDSR ENSBTAP00000019648/1-536 NMDTENAAAA AAAAFTASSQ LKEAMLVKMA EEEESLEAEI VYPITCGDSR BACU011237/1-512 NMETENAAAA AAAAFTASSQ LKEAVLVKMA EEEESLEAEI VYPITCGDSR bmy_14487T0/1-289 ---------- ---------- --------MA EEEESLEAEI VYPITCGDSR 101 150 ENSTTRP00000011545/1-529 ANLIWRKFVC PGINVKCVQX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000266068/1-530 ANLIWRKFVC PGINVKCVQY DEHVISPKEF VHLAGKSTLK DWKRAIRMNG ENSBTAP00000019648/1-536 ANLIWRKFVC PGINVKCVQY DEHVISPKEF VHLAGKSTLK DWKRAIRMNG BACU011237/1-512 ANLIWRKFVC PGINVKCVQY DEHVISPKEF VHLAGKSTLK DWKRAIRMNG bmy_14487T0/1-289 ANLIWRKFVC PGINVKCVQY DEHVISPKEF VHLAGKSTLK DWKRAIRMNG 151 200 ENSTTRP00000011545/1-529 XXXXKIMDSG ELDFYQHD-V CSNTCRSTKI DLSGARASLG SPTPAEYIPL ENSP00000266068/1-530 IMLRKIMDSG ELDFYQHDKV CSNTCRSTKI DLSGARVSLS SPTSAEYIPL ENSBTAP00000019648/1-536 IMLRKIMDSG ELDFYQHDRV CSNTCRSTKI DLSGARASLG SPTPTEYIPL BACU011237/1-512 IMLRKIMDSG ELDFYQHDRV CSNTCRSTKI DLSGARASLG SPTPAEYIPL bmy_14487T0/1-289 IMLRKIMDSG ELDFYQHDRV CSNTCRSTKI DLSGARASLG SPTPAEYIPL 201 250 ENSTTRP00000011545/1-529 TPATADVNGA PATITIETCE DPGDWTTAVG DDTFAFWRGL KDAGLLDEVI ENSP00000266068/1-530 TPAAADVNGS PATITIETCE DPGDWTAAIG DDTFTFWRGL KDAGLLDEVI ENSBTAP00000019648/1-536 TPATADVNGA PATITIETCE DPGDWTTAVG DDTFAFWRGL KDAGLLDEVI BACU011237/1-512 TPATAD---- ---------- ---------- DDTFAFWRGL KDAGLLDEVI bmy_14487T0/1-289 TPATADVNGA PATITIETCE DPGDWTTAVG DDTFAFWRGL KDAGLLDEVI 251 300 ENSTTRP00000011545/1-529 QEFHQELVET MKGLQQRVQD PPLQLRDAVL LNNIVQNFGM LDLVKKVLAS ENSP00000266068/1-530 QEFHQELVET MRGLQQRVQD PPLQLRDAVL LNNIVQNFGM LDLVKKVLAS ENSBTAP00000019648/1-536 QEFHQELVET MKGLQQRVQD PPLQLRDAVL LNNIVQNFGM LDLVKKVLAS BACU011237/1-512 QEFHQELVET MKGLQQRVQD PPLQLRDAVL LNNIVQNFGM LDLVKKVLAS bmy_14487T0/1-289 QEFHQELVET MKGLQQRVQD PPLQLRDAVL LNNIVQNFGM LDLVKKVLAS 301 350 ENSTTRP00000011545/1-529 HKCQMDRSRE QYARDLAALE QQCDEHRRRA KELKHKSQHL SNVLMTLTPV ENSP00000266068/1-530 HKCQMDRSRE QYARDLAALE QQCDEHRRRA KELKHKSQHL SNVLMTLTPV ENSBTAP00000019648/1-536 HKCQMDRSRE QYARDLAALE QQCDEHRRRA KELKHKSQHL SNVLMTLTPV BACU011237/1-512 HKCQMDRSRE QYARDLAALE QQCDEHRRRA KELKHKSQHL SNVLMTLTPV bmy_14487T0/1-289 HKCQMDRSRE QYARDLAALE QQCDEHRRRA KELKHKSQHL SNVLMTLAPV 351 400 ENSTTRP00000011545/1-529 SLPPAVKRPR LARATSGPAA IASQVLAQSA QIALTPGVPV SQLTSVPLGK ENSP00000266068/1-530 SLPPPVKRPR LARATSGPAA MASQVLTQSA QLALGPGVPV PQLTSVPLGK ENSBTAP00000019648/1-536 SLPPPVKRPR LARATSGPAA IASQVLAQSA QIALTPGVPV SQLTSVPLGK BACU011237/1-512 SLPPPVKRPR LARATSGPAA IASQVLAQSA QIALTPGVPV SQLTGVPLGK bmy_14487T0/1-289 ALPAPAKRPR LARATSG--- ---------- ---------- ---------- 401 450 ENSTTRP00000011545/1-529 VVSTLPSPML GKAMPQAAPA SSPASPLLGG YTVLASSGTT FPSTVEIHPD ENSP00000266068/1-530 VVSTLPSTVL GKGSLQAPPA SSPASPLLGG YTVLASSGST YPSTVEIHPD ENSBTAP00000019648/1-536 VVSTLPSPVL GKAAPQVAPA SSPASPLLGG YTVLASSGTT FPNTVEIHPD BACU011237/1-512 VVSTLPSPML GKAMPQAAPA SSPASPLLGG YTVLASSGTT FPSTVEIHPD bmy_14487T0/1-289 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000011545/1-529 ASSLTVLSTA AMQDGSTVVK VVSPLQLLTL PGLGPTLQNV AQVSPGGSTI ENSP00000266068/1-530 ASSLTVLSTA AVQDGSTVFK VVSPLQLLTL PGLGPTLQNV AQASPGSSTI ENSBTAP00000019648/1-536 ASSLTVLSTA AMQDGSTVVK VVSPLQLLTL PGLGPTLQNV AQVSPGGSTI BACU011237/1-512 ASSLTVLSTA AMQDGSTVVK VVSPLQLLAL PGLGPTLQNV AQVSPGGSTI bmy_14487T0/1-289 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000011545/1-529 VTVPTG---- --AAPGPEEH TATIEVAAMA EGHEHK ENSP00000266068/1-530 VTVPAG---- --AAPGPEEH TATIEVAAMA EDHERK ENSBTAP00000019648/1-536 VTVPTGTVES AVAAPGPEEH TATIEVAAMA EGHEHK BACU011237/1-512 VTVPTGAVES AVAAPGPEEH TATIEVAAMA EGHEHK bmy_14487T0/1-289 ---------- ---------- ---------- ------