KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:17 2014 Check: 00 .. Name: ENSP00000251582/1-1211 Len: 1648 Check: 9567 Weight: 1.00 Name: ENSBTAP00000019526/1-1205 Len: 1648 Check: 7911 Weight: 1.00 Name: ENSTTRP00000010979/1-1161 Len: 1648 Check: 4707 Weight: 1.00 Name: bmy_03343T0/1-1181 Len: 1648 Check: 912 Weight: 1.00 Name: BACU002919/1-1013 Len: 1648 Check: 8529 Weight: 1.00 // 1 50 ENSP00000251582/1-1211 MDPPAGAARR LLCPALLLLL LLLPPPLLPP PPPPANARL- AAAADPPGGP ENSBTAP00000019526/1-1205 MDPPAGAAGR LLCPALLLLL LL-------- -PLPADARLA AAAADPPGGP ENSTTRP00000010979/1-1161 MDPPAGAARR LLCPALLLLL LP-----LLL PPLPADARL- AAAADPPGWP bmy_03343T0/1-1181 ---------- ---------- ---------- ---------- ---------- BACU002919/1-1013 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000251582/1-1211 LGHGAERILA VPVRTDAQGR LVSHVVSAAT SRAGVRARRA APVRTPSFPG ENSBTAP00000019526/1-1205 QGHGAERILA VPVRTDAQGR LVSHVVSAAT APAGVRTRRA APAQIPGLSG ENSTTRP00000010979/1-1161 QGHGAERILA VPVRTDAQGL LVSHVVSAAT AHAGVRARRA APVQIPGFSG bmy_03343T0/1-1181 ---------- ---------- ---------- ---------- ---------- BACU002919/1-1013 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000251582/1-1211 GNEEEPGSHL FYNVTVFGRD LHLRLRPNAR LVAPGATMEW QGEKGTTRVE ENSBTAP00000019526/1-1205 GSEEDPGGRL FYNVTVFGRD LHLRLRPNAR LVAPGATVEW QGESGATRVE ENSTTRP00000010979/1-1161 GSEEDPGGRL FYNVTVFGRD LHLRLRPNAR LVAPGATVEW QSESGATRVE bmy_03343T0/1-1181 -----MGGQV ---------- ---------- ---------- ---------- BACU002919/1-1013 -----MGQRL ---------- ---------- ---------- ---------- 151 200 ENSP00000251582/1-1211 PLLGSCLYVG DVAGLAEASS VALSNCDGLA GLIRMEEEEF FIEPLEKGLA ENSBTAP00000019526/1-1205 PLLGTCLYVG DVAGLAESSS VALSNCDGLA GLIRMEEEEF FIEPLEKGLA ENSTTRP00000010979/1-1161 PLLGTCLYVG DVAGLAEASS VALSNCDGLA GLIRMEEEEF FIEPLEKGLA bmy_03343T0/1-1181 ---------- ---------- -----ISGSA ---------- ---------- BACU002919/1-1013 ---------- ---------- -----CLGPA ---------- ---------- 201 250 ENSP00000251582/1-1211 AQEAEQGRVH VVYRRPPTS- -PPLGGPQAL DTGASLDSLD SLSRALGVLE ENSBTAP00000019526/1-1205 AKEAEQGRVH VVYHRPTTSR PPPLGGPQAL DTGISADSLD SLSRALGVLE ENSTTRP00000010979/1-1161 ANETEQGRVH VVYRRPPTSR PPPLGGPQAL DTGIFPGSLD SFSRALGILE bmy_03343T0/1-1181 ---------- AVQEDP---- ---------- ---------- ---------- BACU002919/1-1013 ----WKGRGS SSKRGPPECG VLEFG----- --GTSPSGLD SLSRALGILE 251 300 ENSP00000251582/1-1211 EHANSSRRRA RRHAADDDYN IEVLLGVDDS VVQFHGKEHV QKYLLTLMNI ENSBTAP00000019526/1-1205 ERVNSSRRRM RRHAADDDYN IEVLLGVDDS VVQFHGTEHV QKYLLTLMNI ENSTTRP00000010979/1-1161 ERVNSSRQRV RRHAADDDYN IEVLLGVDDS VVQFHGKEHV QKYLLTLMNI bmy_03343T0/1-1181 ---------- ---------- ---------- -----GRQG- ---------- BACU002919/1-1013 ERVNSSRQRV RRHAADDDYN IEVLLGVDDS VVQFHGKEHV QKYLLTLMNI 301 350 ENSP00000251582/1-1211 VNEIYHDESL GAHINVVLVR IILLSYGKSM SLIEIGNPSQ SLENVCRWAY ENSBTAP00000019526/1-1205 VNEIYHDESL GAHINVVLVR IILLSYGKSM SLIEIGNPSQ SLENVCRWAY ENSTTRP00000010979/1-1161 VNEIYHDESL GAHINVVLVR IILLSYGKSL SLIEIGNPSQ SLENVCRWAY bmy_03343T0/1-1181 ---------- ---------- ---------- -----GTPGG SLKWEVAW-- BACU002919/1-1013 VNEIYHDESL GAHINVVLVR IILLSYGKSL SLIEIGNPSQ SLENVCRWAY 351 400 ENSP00000251582/1-1211 LQQKPDTGHD EYHDHAIFLT RQDFGPSGMQ GYAPVTGMCH PVRSCTLNHE ENSBTAP00000019526/1-1205 LQQKPDTDHD EYHDHAIFLT RQDFGPSGMQ GYAPVTGMCH PVRSCTLNHE ENSTTRP00000010979/1-1161 LQQXXXXXXX XXXXXXXXXX XXXXXXXXXX XYAPVTGMCH PVRSCTLNHE bmy_03343T0/1-1181 ---------- ---------- ---------- ---------- ---------- BACU002919/1-1013 LQQKPDSGHD EYHDHAIFLT RQDFGPSGMQ GYAPVTGMCH PVRSCTLNHE 401 450 ENSP00000251582/1-1211 DGFSSAFVVA HETGHVLGME HDGQGNRCGD EVRLGSIMAP LVQAAFHRFH ENSBTAP00000019526/1-1205 DGFSSAFVVA HETGHVLGME HDGQGNRCGD EVRLGSIMAP LVQAAFHRFH ENSTTRP00000010979/1-1161 DGFSSAFVVA HETGHVLGME HDGQGNRCGD EVRLGSIMAP LVQAAFHRFH bmy_03343T0/1-1181 ---------- ---------- ---------- ---------- LAAGALFQ-- BACU002919/1-1013 DGFSSAFVVA HETGHVLGME HDGQGNRCGD EVRLGSIMAP LVQAAFHRFH 451 500 ENSP00000251582/1-1211 WSRCSQQELS RYLHSYDCLL DDPFAHDWPA LPQLPGLHYS MNEQCRFDFG ENSBTAP00000019526/1-1205 WSRCSQQELS RYLHSYDCLR DDPFTHDWPA LPQLPGLHYS MNEQCRFDFG ENSTTRP00000010979/1-1161 WSRCSQQELS RYLHSYDCLR DDPFTHDWPA LPQLPGLHYS MNEQCRFDFG bmy_03343T0/1-1181 ---------- ---------- ---------- ---------- ---------- BACU002919/1-1013 WSRCSQQELS RYLHSYDCLR DDPFTHDWPA LPQLPGLHYS MNEQCRFDFG 501 550 ENSP00000251582/1-1211 LGYMMCTAFR TFDPCKQLWC SHPDNPYFCK TKKGPPLDGT MCAPGK---- ENSBTAP00000019526/1-1205 LGYMMCTAFR TFDPCKQLWC SHPDNPYFCK TKKGPPLDGT MCAPGK---- ENSTTRP00000010979/1-1161 LGYMMCTAFR TFDPCKQLWC SHPDNPYFCK TKKGPPLDGT MCAPGK---- bmy_03343T0/1-1181 --------FR TFDPCKQLWC SHPDNPYFCK TKKGPPLDGT MCAPGKSHWL BACU002919/1-1013 LGYMMCTAFR TFDPCKQLWC SHPDNPYFCK TKKGPPLDGT MCAPGK---- 551 600 ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ---------- bmy_03343T0/1-1181 MCRLHLYEWR CVGTPGWGFH PADTVWGGLW LWGQSRLNKA LRMVGDQGGG BACU002919/1-1013 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000251582/1-1211 ---------- ---------- -HCFKGHCIW LTPDILKRDG SWGAWSPFGS ENSBTAP00000019526/1-1205 ---------- ---------- -HCFKGHCIW LTPDILKRDG NWGAWSPFGS ENSTTRP00000010979/1-1161 ---------- ---------- -HCFKGHCIW LTPDILKRDG NWGAWSPFGS bmy_03343T0/1-1181 QGKLGGPTTY HASQRSSELL GHCFKGHCIW LTPDILKRDG NWGAWSPFGS BACU002919/1-1013 ---------- ---------- -HCFKGHCIW LTPDILKRDG NWGAWSPFGS 651 700 ENSP00000251582/1-1211 CSRTCGTGVK FRTRQCDNPH PANGGRTCSG LAYDFQLCSR QDCPDSLADF ENSBTAP00000019526/1-1205 CSRTCGTGVK FRTRQCDNPH PANGGRTCSG LAYDFQLCNS QDCPDALADF ENSTTRP00000010979/1-1161 CSRTCGTGVK FRTRQCDNPH PANGGRTCSG LAYDFQLCNS QDCPDALADF bmy_03343T0/1-1181 CSRTCGTGVK FRTRQCDNPH PANGGRTCSG LAYDFQLCNS QDCPDTLADF BACU002919/1-1013 CSRTCGTGVK FRTRQCDNPH PANGGRTCSG LAYDFQLCNS QDCPDALADF 701 750 ENSP00000251582/1-1211 REEQCRQWDL YFEHGDAQHH WLPHEHRDAK ERCHLYCESR ETGEVVSMKR ENSBTAP00000019526/1-1205 REEQCRQWDL YFEHGDAQHH WLPHEHRDAK ERCHLYCESK ETGEVVSMKR ENSTTRP00000010979/1-1161 REEQCRQWDL YFEHGDAQHH WLPHEHRDAK ERCHLYCESK ETGEVVSMKR bmy_03343T0/1-1181 REEQCRQWDL YFEHGDAQHH WLPHEHRDAK ERCHLYCESK ETGEVVSMKR BACU002919/1-1013 REEQCRQWDL YFEHGDAQHH WLPHEHRDAK ERCHLYCESK ETGEVVSMKR 751 800 ENSP00000251582/1-1211 MVHDGTRCSY KDAFSLCVRG DCRKVGCDGV IGSSKQEDKC GVCGGDNSHC ENSBTAP00000019526/1-1205 MVHDGTRCSY KDAFSLCVRG DCRKVGCDGV IGSSKQEDKC GVCGGDNSHC ENSTTRP00000010979/1-1161 MVHDGTRCSY KDAFSLCVRG DCRKVGCDGV IGSSKQEDKC GVCGGDNSHC bmy_03343T0/1-1181 MVHDGTRCSY KDAFSLCVRG DCRKVGCDGV IGSSKQEDKC GVCGGDNSHC BACU002919/1-1013 TVHDGTRCSY KDAFSLCVRG DCRKVGCDGV IGSSKQEDKC GVCGGDNSHC 801 850 ENSP00000251582/1-1211 KVVKGTFTRS PKKHGYIKMF EIPAGARHLL IQEVDATSHH LAVKNLETGK ENSBTAP00000019526/1-1205 KVVKGTFSRS PKKLGYIKMF EIPAGARHLL IQEADTTSHH LAVKNLETGK ENSTTRP00000010979/1-1161 KVVKGTFTRS PKKLGYIKMF EIPAGARHLL IQEADTTSHH LAVKNLETGK bmy_03343T0/1-1181 KVVKGTFTRS PKKLGYIKMF EIPAGARHLL IQEADTTSHH LAVKNLETGK BACU002919/1-1013 KVVKGTFTRS PKKLGYIKMF EIPAGARHLL IQEADTTSHH LAVKNLETGK 851 900 ENSP00000251582/1-1211 FILNEENDVD ASSKTFIAMG VEWEYRDEDG RETLQTMGPL HGTITVLVIP ENSBTAP00000019526/1-1205 FILNEENDVD PNSKTFIAMG VEWEYRDEDG RETLQTMGPL HGTITVLVIP ENSTTRP00000010979/1-1161 FILNEENDVD PNSKSFIAMG VEWEYRDEDG RETLQTMGPL HGTITVLVIP bmy_03343T0/1-1181 FILNEENDVD PNSKSFIAMG VEWEYRDEDG RETLQTMGPL HGTITVLVIP BACU002919/1-1013 FILNEENDVD PNSKSFIAMG VEWEYRDEDG RETLQTMGPL HGTITVLVIP 901 950 ENSP00000251582/1-1211 VGDTRVSLTY KYMIHEDSLN VDDNNVLEED SVVYEWALKK WSPCSKPCGG ENSBTAP00000019526/1-1205 EGDARISLTY KYMIHEDSLN VDDNNVLEDD SVGYEWALKK WSPCSKPCGG ENSTTRP00000010979/1-1161 QGDARISLTY KYMIHEDSLN VDGNNVLEDN SVGYEWALKK WSPCSKPCGG bmy_03343T0/1-1181 QGDARISLTY KYMIHEDSLN VDDNNVLEDN SVGYEWALKK WSPCSKPCGG BACU002919/1-1013 QGDARISLTY KYMIHEDSLN VDDNNVLEDN SVGYEWALKK WSPCSKPCGG 951 1000 ENSP00000251582/1-1211 GSQFTKYGCR RRLDHKMVHR GFCAALSKPK AIRRACNPQE CSQPVWVTGE ENSBTAP00000019526/1-1205 GSQFTKYGCR RRLDHKMVHR GFCDSVSKPK AIRRTCNPQE CSQPVWVTGE ENSTTRP00000010979/1-1161 GSQFTKYGCR RRLDHKMVHR GFCDSLSKPK AIRRACNPQE CSQPVWVTGE bmy_03343T0/1-1181 GSQFTKYGCR RRLDHKMVHR DFCDSLSKPK AIRRACNTQE CSQPVWVTGE BACU002919/1-1013 GSQFTKYGCR RRLDHKMVHR GFCDSLSKPK AIRRACNAQE CSQPVWVTGE 1001 1050 ENSP00000251582/1-1211 WEPCSQTCGR TGMQVRSVRC IQPLHDNTTR SVHAKHCNDA RPESRRACSR ENSBTAP00000019526/1-1205 WEPCSRSCGR TGMQVRSVRC VQPLHNNTTR SVHTKHCNDA RPEGRRACNR ENSTTRP00000010979/1-1161 WEACSQSCGR TGMQVRS--- ---------- ---------- ---------- bmy_03343T0/1-1181 WEACSQSCGR TGMQVRSVRC IQPLHNNTTR SVHTKHCNDA RPEGRRACNR BACU002919/1-1013 WEACSQSCGR TGMQVRSVRC IQPLHNNTTR SVHTKHCNDA RPEGRRACNR 1051 1100 ENSP00000251582/1-1211 ELCPGRWRAG PWSQCSVTCG NGTQERPVLC RTADDSFGIC QEERPETART ENSBTAP00000019526/1-1205 ELCPGRWRAG SWSQCSVTCG NGTQERPVLC RTADDSFGVC REERPETARI ENSTTRP00000010979/1-1161 ---------- ----CSVTCG NGTQERPVLC RTMDDSFGVC REERPETARI bmy_03343T0/1-1181 ELCPGRWRAG PWSQCSVTCG NGTQERPVLC RTTDDSFGVC REERPETARI BACU002919/1-1013 ELCPGRWRAG PWSQCSVTCG NGTQERPVLC RTTDDSFGVC REERPETARI 1101 1150 ENSP00000251582/1-1211 CRLGPCPRNI SDPSKKSYVV QWLSRPDPDS PIRKIS---- ---------- ENSBTAP00000019526/1-1205 CRLGPCPRNT SDPSKKSYVV QWLSRPDPNS PVQETS---- ---------- ENSTTRP00000010979/1-1161 CRLGPCPRNV SDPSKKSYVV QWLSRPDPNS PVQKTS---- ---------- bmy_03343T0/1-1181 CRLGPCPRNI SDPSKKSYVV QWLSRPDPNS PVQKTSSSNR PVYNSVSALQ BACU002919/1-1013 CRLGPCPRNI SDPSKKSYVV QWLSRPDPNS PVQKTS---- ---------- 1151 1200 ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ---------- bmy_03343T0/1-1181 CMPCALWSLP TLLVESVFSG PLCSAVPFGA AWLGGQSCSG TARGTDLLWG BACU002919/1-1013 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ---------- bmy_03343T0/1-1181 CQDLAVMAFK GAKICRGAGG ARGQSLNAGA AGRKSRRSPP VPFQTPPTSE BACU002919/1-1013 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ---------- bmy_03343T0/1-1181 ARPEGSRGCA VLRRRPGRPA RFRQCVGGSL ATSAVAAAAD PVLCVLLTRV BACU002919/1-1013 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ---------- bmy_03343T0/1-1181 TVACFLWPLC PAHTTLGPRT LSPWGFRSSR GGRGRVPTVG HQDTPPLPFS BACU002919/1-1013 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ---------- bmy_03343T0/1-1181 VHSFQWPLSS CTHDPVHGRE REHGLTSAER RPALWPQRPF GADCCWSLGH BACU002919/1-1013 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- ---------- bmy_03343T0/1-1181 SAAGAALHQR ATGLALGVTS VALPPVTPHS PQPRPLFIAS PLDSAQPSPG BACU002919/1-1013 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000251582/1-1211 ---------- ---------- ---------- ---------- -----SKGHC ENSBTAP00000019526/1-1205 ---------- ---------- ---------- ---------- -----SKGRC ENSTTRP00000010979/1-1161 ---------- ---------- ---------- ---------- -----SKGRC bmy_03343T0/1-1181 TSYCYFSETG CLGLARCCLL LFTSVTNGAA GLQVPFWSIT SLVSDSKGRC BACU002919/1-1013 ---------- ---------- ---------- ---------- -----SKGRC 1501 1550 ENSP00000251582/1-1211 QGDKSIFCRM EVLSRYCSIP GYNKLCCKSC NLYNNLTNVE GRIEPPPGKH ENSBTAP00000019526/1-1205 QGDKSVFCRM EVLSRYCSIP GYNKLCCKSC NPHDNLTDVD DRAEPPSGKH ENSTTRP00000010979/1-1161 QGDKSMFCRM EVLSRYCSIP GYNKLCCKSC NLQDNLTNVD DRAEPPSGKH bmy_03343T0/1-1181 QGDKSMFCRM EVLSRYCSIP GYNKLCCKSC NLQDNLTNVD DRTEPPSGKH BACU002919/1-1013 QGDKSMFCRM EVLSRYCSIP GYNKLCCKSC NLQDNLTNVD DRAEPPSGKH 1551 1600 ENSP00000251582/1-1211 NDIDVFMPTL PVPTVAMEVR PSPSTPLEVP LNASSTNATE DHPETNAVDE ENSBTAP00000019526/1-1205 NDIEELMPTL SVPTLVMEVQ PPPGIPLEVP LNTSSTNATE DHPETNAVDV ENSTTRP00000010979/1-1161 NDIEELMPTL PVPTLVMEVQ PPPGTPLEVP LNTSSTSATE DHPETNAVDV bmy_03343T0/1-1181 NDIEELMPTL PVPTLVMEVQ PPPGTPLEVP LNTSSTGATE DHPETNAVDV BACU002919/1-1013 NDIEELMPTL PVPTLVMEVQ PPPSAPLEVP LNTSSTGATE DHPEINAVDA 1601 1650 ENSP00000251582/1-1211 PYKIHGLEDE VQPPNLIPRR PSPYEKTRNQ RIQELIDEMR KKEMLGKF ENSBTAP00000019526/1-1205 PYKIPGLEDE VQPPNLIPRR PSPYEKTRNQ RIQELIDEMR KKEMLGKF ENSTTRP00000010979/1-1161 PYKIQGLEDE VQPPNLIPRR PSPYEKTRNQ RIQELIDEMR KKEMLGKF bmy_03343T0/1-1181 PYKIHGLEDE VQPPNLIPRR PSPYEKTRNQ RIQELIDEMR KKEMLGKF BACU002919/1-1013 PYKIHGLEDE VQPPNLIPRR PSPYEKTRNH RIQELIDEMR KKEMLGKF