KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:08:11 2014 Check: 00 .. Name: ENSP00000323926/1-1104 Len: 1110 Check: 9978 Weight: 1.00 Name: ENSBTAP00000019509/1-1104 Len: 1110 Check: 9016 Weight: 1.00 Name: bmy_03195T0/1-797 Len: 1110 Check: 7311 Weight: 1.00 Name: ENSTTRP00000004154/1-1103 Len: 1110 Check: 2190 Weight: 1.00 Name: BACU010994/1-246 Len: 1110 Check: 4473 Weight: 1.00 // 1 50 ENSP00000323926/1-1104 MSFRAARLSM RNRRNDTLDS TRTLYSSASR STDLSYSESD LVNFIQANFK ENSBTAP00000019509/1-1104 MSFKGARFSM RNRRNGTPDS TRTLYSSASR STDVSYAESD LVNFIEANFK bmy_03195T0/1-797 MSFKGAQLSM RKRRNGTPDS TRTLYSSTSR STDVSYSESD LVNFIQANIK ENSTTRP00000004154/1-1103 MSFKGARLSM RSRRNGTPDS TRTLYSSASR STDVSYSESD LVNFIQANFK BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000323926/1-1104 KRECVFFTKD SKATENVCKC GYAQSQHMEG TQINQSEKWN YKKHTKEFPT ENSBTAP00000019509/1-1104 KRECVFFTKD SKATENVCKC GYAQNQHIEG TQINQNEKWN YKKHTKEFPT bmy_03195T0/1-797 KRECVFFTKD SKATENVCKC GYTQSQHIEG TQINQXEKWN YKKHTKEFPT ENSTTRP00000004154/1-1103 KRECVFFTKD SKATENVCKC GYTQSQHIEG TQTNQNEKWN YKKHTKEFPT BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000323926/1-1104 DAFGDIQFET LGKKGKYIRL SCDTDAEILY ELLTQHWHLK TPNLVISVTG ENSBTAP00000019509/1-1104 DAFGDVQFET QGKKGKYIRL SCDTDAETLY ELLTQHWHLK TPNLVISVTG bmy_03195T0/1-797 DAFGDIQFET LGKKGKYIRL SCDTDAETLY ELLTQHWHLK TPNLVISVTG ENSTTRP00000004154/1-1103 DAFGDIQFET LGKKGKYIRL SCDTDAETLY ELLTQYWHLK TPNLVISVTG BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000323926/1-1104 GAKNFALKPR MRKIFSRLIY IAQSKGAWIL TGGTHYGLMK YIGEVVRDNT ENSBTAP00000019509/1-1104 GARNFALKPR MRKIFSRLIY IAQSKGAWIL TGGTHYGLMK FIGEVVRDNT bmy_03195T0/1-797 GAKNFALKPR MRKIFSRLIY IAQSKGAWIL TGGTHYGLMK YIGEVVRDNT ENSTTRP00000004154/1-1103 GAKNFALKPR MRKIFSRLIY IAQSKGAWIL TGGTHYGLMK YIGEVVRDNT BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000323926/1-1104 ISRSSEENIV AIGIAAWGMV SNRDTLIRNC DAEGYFLAQY LMDDFTRDPL ENSBTAP00000019509/1-1104 ISRNSEENIV AIGIAAWGMV SNRDTLIRNC DVEGYFSAQY IMDDFKRDPL bmy_03195T0/1-797 ISRNSEENIV AIGIAAWGMV SNRDPLIRNC DVEGYFSAQY IMDDFKRDPL ENSTTRP00000004154/1-1103 ISRNSEENIV AIGIAAWGMV SNRDTLIRSC DVEGYFSAQY IMDDFKRDPL BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000323926/1-1104 YILDNNHTHL LLVDNGCHGH PTVEAKLRNQ LEKYISERTI QDSNYGGKIP ENSBTAP00000019509/1-1104 YILDNNHTHL LLVDNGCHGH PTVEAKLRNQ LEKYISERTI QDSNYGGKIP bmy_03195T0/1-797 YILDNNHTHL LLVDNGCHGH PTVEAKLRDQ LEKYISERTI QDSNYGGKIP ENSTTRP00000004154/1-1103 YILDNNHTHL LLVDNGCHGH PTVEAKLRYQ LEKYISERTI QDSNYGGKIP BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000323926/1-1104 IVCFAQGGGK ETLKAINTSI KNKIPCVVVE GSGQIADVIA SLVEVEDALT ENSBTAP00000019509/1-1104 IVCFAQGGGK ETLKAINTSV KSKIPCVVVE GSGQIADVIA SLVEVEDVLT bmy_03195T0/1-797 IVCFAQGGGK ETLKAISTSI KSKIPCVVVE GSGQIADVIA SLVEVEDALT ENSTTRP00000004154/1-1103 IVCFAQGGGK ETLKAISTSV KSKIPCVVVE GSGQIADVIA SLVEVEDALT BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000323926/1-1104 SSAVKEKLVR FLPRTVSRLP EEETESWIKW LKEILECSHL LTVIKMEEAG ENSBTAP00000019509/1-1104 SSIIKEKLVR FLPRTVSRLP EEETESWIRW LKEIVESSHL LTVIKMEEAG bmy_03195T0/1-797 SSIIKEKLVX FLPRTVSRLP EEEIESWIKW LKEILESSHL LTIIKIEEAG ENSTTRP00000004154/1-1103 SSIIKEKLVR FLPRTVSRLP EEEIESWIKW LKEILESSHL LTVIKIEEAG BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000323926/1-1104 DEIVSNAISY ALYKAFSTSE QDKDNWNGQL KLLLEWNQLD LANDEIFTND ENSBTAP00000019509/1-1104 DEIVSNAISY ALYKAFSTNE QDKDNWNGQL KLLLEWNQLD IANDEIFTND bmy_03195T0/1-797 DEIVSSAISY ALYKAFSTNE QDKDNWNGQL KLLLEWNQLD LASDEIFTND ENSTTRP00000004154/1-1103 DEIVSNAISY ALYKAFSTNE QDKDNWNGQL KLLLEWNQLD LASDEIFTND BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000323926/1-1104 RRWESADLQE VMFTALIKDR PKFVRLFLEN GLNLRKFLTH DVLTELFSNH ENSBTAP00000019509/1-1104 RRWESADLQE VMFTALIKDR PKFVRLFLEN GLNLRKFLTN DVLTELFSNH bmy_03195T0/1-797 RRWE------ ---------- ---------- ---------- ---------- ENSTTRP00000004154/1-1103 RRWESADLQE VMFMALIKDR PKFVRLFLEN GLNLQKFLTN DILTELFSNH BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000323926/1-1104 FSTLVYRNLQ IAKNSYNDAL LTFVWKLVAN FRRGFRKEDR NGRDEMDIEL ENSBTAP00000019509/1-1104 FSSLVYRNLQ IAKNSYNDAL LTFVWKLVAN FRRGFRKEDR NSRDEIDIEL bmy_03195T0/1-797 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004154/1-1103 FSTLVYRNLQ IAKNSYNDTL LTFIWKLVAN FRRGFRKEDR NSRDEIDVEF BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000323926/1-1104 HDVSPITRHP LQALFIWAIL QNKKELSKVI WEQTRGCTLA ALGASKLLKT ENSBTAP00000019509/1-1104 HDVSPITRHP LQALFIWAIL QNKKELSKVI WEQTRGCTLA ALGASKLLKT bmy_03195T0/1-797 -DVSPVTRHP LQALFIWAIL QNKKELSKVI WE-------- ---------- ENSTTRP00000004154/1-1103 HDVSPITRHP LQALFIWAIL QNKKELSKAI WEQXXXXXXX XXXXXXXXXX BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000323926/1-1104 LAKVKNDINA AGESEELANE YETRAVELFT ECYSSDEDLA EQLLVYSCEA ENSBTAP00000019509/1-1104 LAKVKNDINA AGESEELANE YETRAVELFT ECYSSDEDLA EQLLVYSCEA bmy_03195T0/1-797 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004154/1-1103 XXXXXXXXXX XXXXXXXXXX XXXXXXXLFT EC-SSDEDLA EQLMVYSCEA BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000323926/1-1104 WGGSNCLELA VEATDQHFIA QPGVQNFLSK QWYGEISRDT KNWKIILCLF ENSBTAP00000019509/1-1104 WGGSSCLELA VEATDQHFIA QPGVQNFLSK QWYGEISRDT KNWKIILCLF bmy_03195T0/1-797 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004154/1-1103 WGESSCLELA VEATDQHFIA QPGVQNFLSK QWYGEISRDT KNWKIILCLF BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000323926/1-1104 IIPLVGCGFV SFRKKPVDKH KKLLWYYVAF FTSPFVVFSW NVVFYIAFLL ENSBTAP00000019509/1-1104 IIPLVGCGFV SFRKKPLDKH RRLLWYYVAF FTSPFVVFSW NVVFYIAFLL bmy_03195T0/1-797 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004154/1-1103 IIPLVGCGFV SFRKKPLDKH RKLLWYYVAF FTSPFVVFSW NVVFYIAFLL BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000323926/1-1104 LFAYVLLMDF HSVPHPPELV LYSLVFVLFC DEVRQWYVNG VNYFTDLWNV ENSBTAP00000019509/1-1104 LFAYVLLMDF HSVPHAPELV LYALVFVLFC DEVRQWCVNG VNYFTDLWNV bmy_03195T0/1-797 ---------- ---------- ---------- ----QWYMNG VNYFTDLWNI ENSTTRP00000004154/1-1103 LFAYVLLMDF HPVPQPPELV LYALVFVLFC DEVRQWYMNG VNYFTDLWNI BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000323926/1-1104 MDTLGLFYFI AGIVFRLHSS NKSSLYSGRV IFCLDYIIFT LRLIHIFTVS ENSBTAP00000019509/1-1104 MDSLGLFYFI AGIVFRLHPA NKTSLYSGRV IFCLDYIIFT LRLIHIFTVS bmy_03195T0/1-797 MDTLGLFYFI AGIVFRLYPS NKTSLYSGRV IFCLDYIIFT LRLIHIFTVS ENSTTRP00000004154/1-1103 MDTLGLFYFI AGIVFRLYPS NKTSLYSGRV IFCLDYIIFT LRLIHIFTVS BACU010994/1-246 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000323926/1-1104 RNLGPKIIML QRMLIDVFFF LFLFAVWMVA FGVARQGILR QNEQRWRWIF ENSBTAP00000019509/1-1104 RNLGPKIIML QRMLIDVFFF LFLFAVWMVA FGVARQGILR QNEHRWRWIF bmy_03195T0/1-797 RNLGPKIIML QRMLIDVFFF LFLFAVWMVA FGVARQGILR QNEHRWKWIF ENSTTRP00000004154/1-1103 RNLGPKIIML QRMLIDVFFF LFLFAVWMVA FGVARQGILR QNEHRWRWIF BACU010994/1-246 --------ML QRMLIDVFFF LFLFAVWMVA FGVARQGILR QNERRWKWIF 901 950 ENSP00000323926/1-1104 RSVIYEPYLA MFGQVPSDVD GTTYDFAHCT FTGNESKPLC VELDEHNLPR ENSBTAP00000019509/1-1104 RSVIYEPYLA MFGQVPSDVD GTTYDFSHCT FTGNESKPLC VELDEHNLPR bmy_03195T0/1-797 RSVIYEPYLA MFGQVPSDVD STTYDFSHCT FTGNESKPLC VELDEHKLPR ENSTTRP00000004154/1-1103 RSVIYEPYLA MFGQVPSDVD STTYDFSHCT FTGNESKPLC VELDEHNLPR BACU010994/1-246 RSVIYEPYLA MFGQVPSDVD STTYDFSHCT FTGNESKPLC VELDEHKLPR 951 1000 ENSP00000323926/1-1104 FPEWITIPLV CIYMLSTNIL LVNLLVAMFG YTVGTVQENN DQVWKFQRYF ENSBTAP00000019509/1-1104 FPEWITIPLV CIYMLSTNIL LVNLLVAMFG YTVGTVQENN DQVWKFQRYF bmy_03195T0/1-797 FPEWVTIPLV CIYMLSTNIL ---------- YTVGTVQENN DQVWKFQRYF ENSTTRP00000004154/1-1103 FPEWITIPLV CIYMLSTNIL LVNLLVAMFG YTVGTVQENN DQVWKFQRYF BACU010994/1-246 FPEWVTIPLV CIYMLSTNIL LVNLLVAMFG YTVGTVQENN DQVWKFQRYF 1001 1050 ENSP00000323926/1-1104 LVQEYCSRLN IPFPFIVFAY FYMVVKKCFK CCCKEKNMES SVCCFKNEDN ENSBTAP00000019509/1-1104 LVQEYCSRLN IPFPFVVFAY FYKVAKKCFR CCCKERSTEP SACCFRNEDN bmy_03195T0/1-797 LVQEYCTRLN VPFPFVVFAY FYMVVKKCFR CCCKERSTES SACCFKNEDN ENSTTRP00000004154/1-1103 LVQEYCNRLN VPFPFVVFAY FYMVVKKCFR CCCKERSAES SACCFKNEDN BACU010994/1-246 LVQEYCTRLN IPFPFVVFAY FYMVVKKCFR CCCKERSTES SACCFKNEDN 1051 1100 ENSP00000323926/1-1104 ETLAWEGVMK ENYLVKINTK ANDTSEE-MR HRFRQLDTKL -----NDLKG ENSBTAP00000019509/1-1104 MTLAWEGVMK ENYLVKINTK ASDPSEE-IR HRFRQLDTKL -----NDLKG bmy_03195T0/1-797 MTLAWEGVMK ENYLVKINTK ASDTSEEYAS HLFLLCEPPL VYRSWQNTGS ENSTTRP00000004154/1-1103 MTLAWEGVMK ENYLVKINTK AHDTSEE-MR HRFRQLDTKL -----NDLKG BACU010994/1-246 MTLAWEGVMK ENYLVKINTK ASDTSEE-MR HRFRQLDTKL -----NDLKG 1101 1150 ENSP00000323926/1-1104 LLKEIANKIK ENSBTAP00000019509/1-1104 ILKEIANKIK bmy_03195T0/1-797 LFEQTL---- ENSTTRP00000004154/1-1103 LLKEIANKIK BACU010994/1-246 LLKEIANKIK