KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:07:48 2014 Check: 00 .. Name: ENSTTRP00000002776/1-287 Len: 323 Check: 1330 Weight: 1.00 Name: ENSP00000314806/1-292 Len: 323 Check: 6031 Weight: 1.00 Name: ENSBTAP00000019450/1-316 Len: 323 Check: 3211 Weight: 1.00 Name: bmy_03258T0/1-297 Len: 323 Check: 9380 Weight: 1.00 Name: BACU017329/1-292 Len: 323 Check: 4298 Weight: 1.00 // 1 50 ENSTTRP00000002776/1-287 ---------- ---------- -----MGNEC FLAFTTTHLP LAEQNLARYK ENSP00000314806/1-292 ---------- ---------- -----MGNEL FLAFTTSHLP LAEQKLARYK ENSBTAP00000019450/1-316 VDLKLQHVDF WASLHGQVPG LLDWDMGNES FLAFATSHLP LAEQNLARYK bmy_03258T0/1-297 ---------- ---------- -----MGNEC FLAFTTTHLP LAEQNLARYK BACU017329/1-292 ---------- ---------- -----MGNEC FLAFTTTHLP LAEQNLARYK 51 100 ENSTTRP00000002776/1-287 LRIVEPPKLP LEKKPNPDKD GPDFEPNLWM WVDPNIVFPP GKLEVREPSK ENSP00000314806/1-292 LRIVKPPKLP LEKKPNPDKD GPDYEPNLWM WVNPNIVYPP GKLEVSGRRK ENSBTAP00000019450/1-316 LRIVEPPMLP LEKKPNPDKD GPDFEPNLWM WVDPNIMFPP GKLEVPEPSK bmy_03258T0/1-297 LRIVEPPKLP LEKKPNPDKD GPDFEPNLWM WVDPNIVFPP GKLEVPEPSK BACU017329/1-292 LRIVEPPKLP LGKKPNPDKD GPDFEPNLWM WVDPNIVFPP GKLEVPEPSK 101 150 ENSTTRP00000002776/1-287 GKNLTSIVPS PQPPPKEEDF AKCPQATVVE SPSLSGDQ-Y PPRKRFASSN ENSP00000314806/1-292 REDLTSTLPS SQPPQKEED- ASCSEAAGVE SLSQSSSKRS PPRKRFAFSP ENSBTAP00000019450/1-316 GKNLTTTAPS PQPVPKE-DF AKCPEATEVE LLSPPGDQ-C SPWKRFATSL bmy_03258T0/1-297 GKNLTSIVPS PQPPPKEDDF AKCPQATVVE SPSLSGDQ-Y PPQKRFASSP BACU017329/1-292 GKNLTSIVPS PQPPPKEDDF AKCPQATVVE SPSLSGDQ-Y PPRKWFASSP 151 200 ENSTTRP00000002776/1-287 SNWELTEEKE A-DQDDSSSV ALQSPHKA-P LQS-RLRQAS R--GGLWSRX ENSP00000314806/1-292 STWELTEEEE AEDQEDSSSM ALPSPHKRAP LQSRRLRQAS SQAGRLWSRP ENSBTAP00000019450/1-316 SNWELTEEKE AEDQDDRSSV ALPSSHKPAP LQSRRLRQAN SQEGRLWSRP bmy_03258T0/1-297 SNWELTEEEE AEDQEDSSSV ALPSPHKRAP LQSRRLRQAN SQEWGLWSRP BACU017329/1-292 SNWELTEEEE AEDQDDSSSV ALPSPHKRAP LQSRRLRQAN SQEGGLWSRP 201 250 ENSTTRP00000002776/1-287 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000314806/1-292 PLNYFHLIAL ALRNSSPCGL NVQQIYSFTR KHFPFFRTAP EGWKNTVRHN ENSBTAP00000019450/1-316 PLNYFHLIAL ALRNSAPCGL NVQQIYSFTR QHFPFFRTAP EGWKNTVRHN bmy_03258T0/1-297 PLNYFHLIAL ALRNSSPCGL NVQQIYSFTR QHFPFFRTAP EGWKNTVRHN BACU017329/1-292 PLNYFHLIAL ALRNSSPCGL NVQQIYSFTR QHFPFFRTAP EGWKNTVRHN 251 300 ENSTTRP00000002776/1-287 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000314806/1-292 LCFRDSFEKV PVSMQGGAST RPRSCLWKLT EEGHRRFAEE ARALASTRLE ENSBTAP00000019450/1-316 LCFRDSFEKV PVSMQGGVSS RPRSCLWKLT DEGHRRFAEE ARALASTRLE bmy_03258T0/1-297 LCFRDSFEKV PVSMQGGAST RPRSCLWKLT DEGHRRFAEE ARALASTKLE BACU017329/1-292 LCFRDSFEKV PVSTQGGAST RPRSCLWKLT EEGHRRFAEE ARALASTKLE 301 350 ENSTTRP00000002776/1-287 XXXXXXXXXX VMP-SLFDL- --- ENSP00000314806/1-292 SIQQCMSQPD VMP-FLFDL- --- ENSBTAP00000019450/1-316 RIQQCMSQPD VMS-SLFDL- --- bmy_03258T0/1-297 TIQQCMSQPG VRPRHMWGRG EGP BACU017329/1-292 TIQQCMSQPD VMP-SLFDL- ---