KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:06:40 2014 Check: 00 .. Name: ENSTTRP00000008972/1-499 Len: 774 Check: 2739 Weight: 1.00 Name: bmy_03386T0/1-764 Len: 774 Check: 8683 Weight: 1.00 Name: ENSP00000354856/1-498 Len: 774 Check: 1812 Weight: 1.00 Name: BACU003963/1-498 Len: 774 Check: 43 Weight: 1.00 Name: ENSBTAP00000019139/1-500 Len: 774 Check: 7125 Weight: 1.00 // 1 50 ENSTTRP00000008972/1-499 ---------- ---------- ---------- -MPHPRRYHS SERGSRGSYH bmy_03386T0/1-764 MHKLRKVAGW RSFGECGEGQ PVRDFGGSMY MMPHPRRYHS SERGSRGSYH ENSP00000354856/1-498 ---------- ---------- ---------- -MPHPRRYHS SERGSRGSYR BACU003963/1-498 ---------- ---------- ---------- -MPHPRRYHS SERGSRGSYH ENSBTAP00000019139/1-500 ---------- ---------- ---------- -MPHPRRYHS SERGSRGSYH 51 100 ENSTTRP00000008972/1-499 EHYRSRKHKR RRSRSWSSSS DRTRRRRRED SYHVRSRXXX XXXXXXXXXX bmy_03386T0/1-764 EHYRSRKHKR RRSRSWSSSS DRTRRRRRED SYHVRSRSSY DDRSSDRRAY ENSP00000354856/1-498 EHYRSRKHKR RRSRSWSSSS DRTRRRRRED SYHVRSRSSY DDRSSDRRVY BACU003963/1-498 EHYRSRKHKR RRSRSWSSSS DRTRRRRRED SYHVRSR-SY DDRSSDRRAY ENSBTAP00000019139/1-500 EHYRSRKHKR RRSRSWSSSS DRTRRRRRED SYHVRSRSSY DDRSSDRRAY 101 150 ENSTTRP00000008972/1-499 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_03386T0/1-764 DRRYCGSYRR NDYSRDRGEA YYDTDYRHSY EYHRENSSYR SQRSSRRKHR ENSP00000354856/1-498 DRRYCGSYRR NDYSRDRGDA YYDTDYRHSY EYQRENSSYR SQRSSRRKHR BACU003963/1-498 DRRYCGSYRR NDYSRDRGEA YYDTDYGHSY EYHRENSSYR SQRSSRRKHR ENSBTAP00000019139/1-500 DRRYCGSYRR NDYSRDRGEA YYDTDYRHSY EYHRENSSYR SQRSSRRKHR 151 200 ENSTTRP00000008972/1-499 XXXXXXXXXX XXXXQHSSRR AKSVEDDAEG H-IYHVGDWL QERYEIVSTL bmy_03386T0/1-764 RRRRRSRTFS RSSSVSVSPG PSSP------ ----HSSSAL WDPDEIVSTL ENSP00000354856/1-498 RRRRRSRTFS RSSS-HSSRR AKSVEDDAEG HLIYHVGDWL QERYEIVSTL BACU003963/1-498 RRRRRSRTFS RSSS-HSSRR AKSVEDDAEG HLIYHVGDWL QERYEIVSTL ENSBTAP00000019139/1-500 RRRRRSRTFS RSSSQHSSRR AKSVEDDAEG HLIYHVGDWL QERYEIVSTL 201 250 ENSTTRP00000008972/1-499 GEGTFGRVVQ CVDHRRGGAR VALKIIKNVE KYKEAARLEI NVLEKINEKD bmy_03386T0/1-764 GEGTFGRVVQ CVDHRRGGAR VALKIIKNVE KYKEAARLEI NVLEKINEKD ENSP00000354856/1-498 GEGTFGRVVQ CVDHRRGGAR VALKIIKNVE KYKEAARLEI NVLEKINEKD BACU003963/1-498 GEGTFGRVVQ CVDHRRGGAR VALKIIKNVE KYKEAARLEI NVLEKINEKD ENSBTAP00000019139/1-500 GEGTFGRVVQ CVDHRRGGAR VALKIIKNVE KYKEAARLEI NVLEKINEKD 251 300 ENSTTRP00000008972/1-499 PDNKNLCVQM FDWFDYHGHM CISFELLGLS TFDFLKDNNY LPYPIHQVRH bmy_03386T0/1-764 PDNKNLCVQM FDWFDYHGHM CISFELLGLS TFDFLKDNNY LPYPIHQVRH ENSP00000354856/1-498 PDNKNLCVQM FDWFDYHGHM CISFELLGLS TFDFLKDNNY LPYPIHQVRH BACU003963/1-498 PDNKNLCVQM FDWFDYHGHM CISFELLGLS TFDFLKDNNY LPYPIHQVRH ENSBTAP00000019139/1-500 PDNKNLCVQM FDWFDYHGHM CISFELLGLS TFDFLKDNNY LPYPIHQVRH 301 350 ENSTTRP00000008972/1-499 MAFQLCQAVK FLHDNKLTHT DLKPENILFV NSDYELTYNL EKXXXXXXXX bmy_03386T0/1-764 MAFQLCQAVK FLHDNKLTHT DLKPENILFV NSDYELTYNL EKKRDERSVK ENSP00000354856/1-498 MAFQLCQAVK FLHDNKLTHT DLKPENILFV NSDYELTYNL EKKRDERSVK BACU003963/1-498 MAFQLCQAVK FLHDNKLTHT DLKPENILFV NSDYELTYNL EKKRDERSVK ENSBTAP00000019139/1-500 MAFQLCQAVK FLHDNKLTHT DLKPENILFV NSDYELTYNL EKKRDERSVK 351 400 ENSTTRP00000008972/1-499 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_03386T0/1-764 STAVRVVDFG SATFDHEHHS TIVSTRHYRA PEVILELGWS QPCDVWSIGC ENSP00000354856/1-498 STAVRVVDFG SATFDHEHHS TIVSTRHYRA PEVILELGWS QPCDVWSIGC BACU003963/1-498 STAVRVVDFG SATFDHEHHS TIVSTRHYRA PEVILELGWS QPCDVWSIGC ENSBTAP00000019139/1-500 STAVRVVDFG SATFDHEHHS TIVSTRHYRA PEVILELGWS QPCDVWSIGC 401 450 ENSTTRP00000008972/1-499 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_03386T0/1-764 IIFEYYVGFT LFQTHDNREH LAMMERILGP IPSRMIRKTR KQKYFYRGRL ENSP00000354856/1-498 IIFEYYVGFT LFQTHDNREH LAMMERILGP IPSRMIRKTR KQKYFYRGRL BACU003963/1-498 IIFEYYVGFT LFQTHDNREH LAMMERILGP IPSRMIRKTR KQKYFYRGRL ENSBTAP00000019139/1-500 IIFEYYVGFT LFQTHDNREH LAMMERILGP IPSRMIRKTR KQKYFYRGRL 451 500 ENSTTRP00000008972/1-499 XXXXXXXXXX XXXXXXXXXX --RYLTSEAE EHHQLFDLIE SMLEYEPAKR bmy_03386T0/1-764 DWDENTSAGR YVRENCKPLR DPAVIQHRPS TQYATLDVYN PFETQESSRK ENSP00000354856/1-498 DWDENTSAGR YVRENCKPLR --RYLTSEAE EHHQLFDLIE SMLEYEPAKR BACU003963/1-498 DWDENTSAGR YVRENCKPLR --RYLTSEAE EHHQLFDLIE SMLEYEPAKR ENSBTAP00000019139/1-500 DWDENTSAGR YVRENCKPLR --RYLTSEAE EHHQLFDLIE SMLEYEPAKR 501 550 ENSTTRP00000008972/1-499 LTLGEA---- ---------- ---------- ---------- -----LQHP- bmy_03386T0/1-764 LSPTEPKNYG SYSTQASAAA ATAELLKKQE ELNRKAEELD RRERELQHAA ENSP00000354856/1-498 LTLGEA---- ---------- ---------- ---------- -----LQHP- BACU003963/1-498 LTLGEA---- ---------- ---------- ---------- -----LQHP- ENSBTAP00000019139/1-500 LTLGEA---- ---------- ---------- ---------- -----LQHP- 551 600 ENSTTRP00000008972/1-499 ---------- ---------- ---FFARLRA EPPNA----- ----KLWDSS bmy_03386T0/1-764 LGGTATRQNN WPPLPSFCPV QPCFFQDISM EIPQEFQKTV STMYYLWMCS ENSP00000354856/1-498 ---------- ---------- ---FFARLRA EPPN------ ----KLWDSS BACU003963/1-498 ---------- ---------- ---FFARLRA EPPTA----- ----KLWDSS ENSBTAP00000019139/1-500 ---------- ---------- ---FFARLRA EPPNA----- ----KLWDSS 601 650 ENSTTRP00000008972/1-499 ---------- ---------- ---------- ---------- ----RDISR- bmy_03386T0/1-764 TLALLLNFLA CLASFCVETN NGSGFGLSIL WILLFTPCSF VCWYRPMYKA ENSP00000354856/1-498 ---------- ---------- ---------- ---------- ----RDISR- BACU003963/1-498 ---------- ---------- ---------- ---------- ----RDISR- ENSBTAP00000019139/1-500 ---------- ---------- ---------- ---------- ----RDISR- 651 700 ENSTTRP00000008972/1-499 ---------- ---------- ---------- ---------- ---------- bmy_03386T0/1-764 FRSDSSFNFF VFFFIFFVQD VLFVLQAIGI PGWGFSGWIS VLVVLEANNT ENSP00000354856/1-498 ---------- ---------- ---------- ---------- ---------- BACU003963/1-498 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019139/1-500 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000008972/1-499 ---------- ---------- ---------- ---------- ---------- bmy_03386T0/1-764 AVAVLMLLVA LFFTGIAVLG IVMLKRIHSL YRRTGASFQK AQQEFAAGVF ENSP00000354856/1-498 ---------- ---------- ---------- ---------- ---------- BACU003963/1-498 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000019139/1-500 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000008972/1-499 ---------- ---------- ---- bmy_03386T0/1-764 SNPVVRTAAA NAAAGAAENA FRAP ENSP00000354856/1-498 ---------- ---------- ---- BACU003963/1-498 ---------- ---------- ---- ENSBTAP00000019139/1-500 ---------- ---------- ----