KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:05:42 2014 Check: 00 .. Name: ENSP00000278935/1-1460 Len: 1516 Check: 8619 Weight: 1.00 Name: bmy_03287T0/1-804 Len: 1516 Check: 4859 Weight: 1.00 Name: ENSBTAP00000018792/1-1448 Len: 1516 Check: 6342 Weight: 1.00 Name: BACU017304/1-903 Len: 1516 Check: 7789 Weight: 1.00 Name: ENSTTRP00000000923/1-1458 Len: 1516 Check: 9749 Weight: 1.00 // 1 50 ENSP00000278935/1-1460 MAGRPLRIGD QLVLEEDYDE TYIPSEQEIL EFAREIGIDP IKEPELMWLA bmy_03287T0/1-804 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018792/1-1448 MAGRPIRIGD QLVLEEDYDE NYIPSEHEIL EFAREIGIDP IKEPQLMWLA BACU017304/1-903 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000923/1-1458 MAGRPIRIGD QLVLEEDYDE TYMPSEQEIL EFAKEIGIDP IEEPELMWLA 51 100 ENSP00000278935/1-1460 REGIVAPLPG EWKPCQDITG DIYYFNFANG QSMWDHPCDE HYRSLVIQER bmy_03287T0/1-804 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018792/1-1448 REGIVAPLPV EWKPCQDITG DIYYFNFANG QSTWDHPCDE HYRNLVIQER BACU017304/1-903 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000923/1-1458 REGIVAPLPG EWKPCQDITG DIYYFNFANG QSMWDHPCDE HYRNLVIQER 101 150 ENSP00000278935/1-1460 AKLSTSGAIK KKKKK----K EKKDKKDRDP PKSSLALGSS LAPVHVPLGG bmy_03287T0/1-804 ---------- ---------- ---------- ------LGSS LAPVHIPLGG ENSBTAP00000018792/1-1448 GKLSTPGATK KKEKKKKKEK EKKDKKDKET SKSPLALGSS LAPVHVPLGG BACU017304/1-903 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000923/1-1458 GKLSTPGAIK KKEKKKK--K EKKDKKDKET SKSPLALGSP LAPVHIPLGG 151 200 ENSP00000278935/1-1460 LAPLRGLVDT PPSALRGSQS VSLGSSVESG RQLGELMLPS QGLKTSAYTK bmy_03287T0/1-804 LAPLRGLVDA PPSALRGSQS VSLGSSAESG -QHGELSLPS QGLKTSAYTK ENSBTAP00000018792/1-1448 LAPLRGLVDA PPSALHGPQS VSLGSSVESG -QLGELLLPS QGLKPSAATK BACU017304/1-903 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000923/1-1458 LAPLRGLVDA PPSALRGSQS VSLGSSVESG -QHGELSMXX XXXXXXXXXX 201 250 ENSP00000278935/1-1460 GLLGSIYEDK TALSLLGLGE ETNEEDEEES DNQSVHSSSE PLRNLHLDIG bmy_03287T0/1-804 GLLGSIHEDK NALSLLALGE ETNEEDEVES DNQSVRSSSE LLKNLHLDIG ENSBTAP00000018792/1-1448 GLLGSIHEDK NALSLLALGE ETNEEDEAES DNQSVRSSSE LLRNLHLDIG BACU017304/1-903 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000923/1-1458 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLDIG 251 300 ENSP00000278935/1-1460 ALGGDFEYEE SLRTSQPEEK KDVSLDSDAA GPPTPCKPSS PGADSSLSSA bmy_03287T0/1-804 ALGGDFEYEE SPRTSQPEEK KDISLDSDAA SPPTPGKLFS QGADSSLSSA ENSBTAP00000018792/1-1448 ALGGDFEYEE SPRASQPEE- KDVSLDSDAA GPLTSGKPFS QGADSSLSSA BACU017304/1-903 ---------- MPRQVGPR-- ---------- ---------- ---------- ENSTTRP00000000923/1-1458 ALGGDFEYEE SPRTSQPEEK KDTSLDSDAA SPPTPGKLFG RRADSSLSSA 301 350 ENSP00000278935/1-1460 VGKGRQGSGA RPGLPEKEEN EKSEPKICRN LVTPKADPTG SEPAKASEKE bmy_03287T0/1-804 DGQGQQGKGA -SWLSEKEKN EKNDPGMSRS VADPGGDPAG DQPAKANKRE ENSBTAP00000018792/1-1448 DDKERQRREA -SWLPGKGKT EKNDPGTSRS GVDPG----G DQPANTTEKE BACU017304/1-903 ---------- ---------- ---------- ---------G EGP------- ENSTTRP00000000923/1-1458 DGQGQQGTGA -SWLPEKEKN EKNDPGMSRS VADPGGDPAG DQPAKANKKE 351 400 ENSP00000278935/1-1460 APEDTVDAGE EGSRREEAAK EPKKKASALE EGSSDASQEL EISEHMKEPQ bmy_03287T0/1-804 APEDPVDARE EGSRKEEAAK EPKKEASVPK ESRSEASEGS EISEHMKELQ ENSBTAP00000018792/1-1448 APEDPVDAGE QGSRKEEAAE DPKEEASVPK ESRSEVSEES EISEHGEQLQ BACU017304/1-903 ---------- ------ELVR RPKK-----R EGRA------ ---------- ENSTTRP00000000923/1-1458 APEDPVDARE EGSLQEEAAK EPKKEASVPK ESRSEASEES EISEHMKELQ 401 450 ENSP00000278935/1-1460 LSDSIASDPK SFHGLDFGFR SRISEHLLDV DVLSPVLGGA CRQAQQPLGI bmy_03287T0/1-804 PSDSTASDPK SFLGLDFGFH SRISEHLLDV DMLSSVLDGA RWEAQR-LGR ENSBTAP00000018792/1-1448 LSDSAASDPK SFLGLGFGFR SQISERLLDM DVHSSVLDGA RWEAQR-LGR BACU017304/1-903 ---------- ---------- ---------- --XXXXXXGF SWEA---MGE ENSTTRP00000000923/1-1458 PSDSTASDPK SFLGLXXXXX XXXXXXXXXX XXXXXXXXXX XXXAQR-LGR 451 500 ENSP00000278935/1-1460 EDKDDSQSSQ DELQSKQSKG LEERLSPPLP HEERAQSPPR SLATEEEPPQ bmy_03287T0/1-804 EDKDVCQSSQ DELQSKKSGG -SERLSPPLL HGERLQSPLH SQATDEGPPQ ENSBTAP00000018792/1-1448 EDKDASQSSQ EELQSKQSGG -SERLSPPLL REERLQSLLH SQATDEGPPQ BACU017304/1-903 T--------- ---------- ---------- ---------- ---------- ENSTTRP00000000923/1-1458 EDKDASQSSQ DELQSKKSRD -SERLSPPLL HGERLQSPLH SQATDEGPPQ 501 550 ENSP00000278935/1-1460 GPEGQPEWKE AEELGEDSAA SLSLQLSLQR EQAPSPPAAC EKGKEQHSQA bmy_03287T0/1-804 PLEEQLEQKG AEEPGEGSAG SPAPPGPLQR EEIPSPPAAH ERGEEQCSQA ENSBTAP00000018792/1-1448 APEGQPEWKE AAEPEEGSLG SPPPSVSLQR EALPSPPAAH ERGQEWRPQA BACU017304/1-903 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000923/1-1458 PLEEQLEQKG AEEPGEGSAG SPSP-LSLQR EEIPSPPAAH ERGEEQCSQA 551 600 ENSP00000278935/1-1460 EELGPGQEEA EDPEEKVAVS PTPPVSPE-- ---------- ---------- bmy_03287T0/1-804 EGPGPGQDEA EEPEEKVAVS PTLPVSPEVE KRACHARWGH VGKDQSWSGG ENSBTAP00000018792/1-1448 EGPGPGQEE- --PKEKVAVS PTPPGSPE-- ---------- ---------- BACU017304/1-903 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000923/1-1458 EGLGPGQDEA EGPKEKMAVG PTLPVSPE-- ---------- ---------- 601 650 ENSP00000278935/1-1460 ---------- ---------- ----VRSTEP VAPPEQLSEA ALKAMEEAVA bmy_03287T0/1-804 QRGEKEERDP EPLLGLSWEA MGEAGRSTEP AAPPEQLSEA ALKTTEEAVA ENSBTAP00000018792/1-1448 ---------- ---------- ----VRSAEP AALREQLSEA ALEATDEAVT BACU017304/1-903 ---------- ---------- ----GRSTEP TAPPEQLSEA ALKATEEAVA ENSTTRP00000000923/1-1458 ---------- ---------- ----ARSTQP AAPPEQLSEA ALKASEEAVA 651 700 ENSP00000278935/1-1460 QVLEQDQRHL LESKQEKMQQ LREKLCQEEE -EEILRLHQQ KEQSLSSLRE bmy_03287T0/1-804 QELEQGQRWL LESKREKVQR LQEKLWQEEE -AETLQLHRQ KEKALSSLKE ENSBTAP00000018792/1-1448 RELEQEQTRL LESKQEKMQR LREKLCREEE -AEALQLHQQ KEKALSSLKE BACU017304/1-903 QELEQEQGWL LESKREKMQR LQEKLWQEEE -AETLQLHQQ KQKALSSLKE ENSTTRP00000000923/1-1458 QGLEQEQRGL LESKREKMPR LQEKLWQEEE AAETLQLHRQ KEKALSSLTE 701 750 ENSP00000278935/1-1460 RLQKAIEEEE ARMREEESQR LSWLRAQVQS STQADEDQIR AEQEASLQKL bmy_03287T0/1-804 QLQRATEEEE SLVREQEGQR LSRLCAQVQS SVEADEHQIR AEHEASLQRL ENSBTAP00000018792/1-1448 QLQRATEEEE TQMREQERQR LSRLRAQVQS SSEADEDQIR AEQEASLQRL BACU017304/1-903 QLQRATEEEE SLVREQEGQR LSRLCAQVQC SVEVDEDQIR AEHEASLQRL ENSTTRP00000000923/1-1458 QLQRATEEEE SLVREQEGQR LSRLCAQVQC SVEADEDQIR AEHEASLQRL 751 800 ENSP00000278935/1-1460 REELESQQKA ERASLEQKNR QMLEQLKEEI EASEKSEQAA LNAAKEKALQ bmy_03287T0/1-804 REELESLQKA ERASLEERNR QTLERLREDM EASEKREQAA LNTEKERALQ ENSBTAP00000018792/1-1448 REELESLQKA ERASLEERSR QTLEQLREEM EASEKREQAA LKVEKERALQ BACU017304/1-903 REELESLQKA ERASLEERSR QTLERLREDM EASEKREQAA LNTEKERALQ ENSTTRP00000000923/1-1458 REELESLQKA ERASLEERNR QMLERLREDM EASEKREQAA LNTEKEKALQ 801 850 ENSP00000278935/1-1460 QLREQLEGER KEAVATLEKE HSAELERLCS SLEAKHREVV SSLQKKIQEA bmy_03287T0/1-804 QLREQLEGER KDAVAALERE HREELERLSS SLEAKHREVV SSLQKKMEEA ENSBTAP00000018792/1-1448 QLREQLEGER REAAAALERE HREELERLSS SLEAKHREVV SSLQKKMQEA BACU017304/1-903 QLREQLEGER KDAVAALERE HREELERLSS SLEAKHREVV SSLQKKMEEA ENSTTRP00000000923/1-1458 QLREQLEGER KDAVAVLERE HREELERLSS SLEAKHREVV SSLQKKMEEA 851 900 ENSP00000278935/1-1460 QQKEEAQLQK CLGQVEHRVH QKSYHVAGYE HELSSLLREK RQEVEGEHER bmy_03287T0/1-804 QQKEEAQLQE SLGRAEQRAH QKVYQVLEYE QEVSA----- ---------- ENSBTAP00000018792/1-1448 HQKEEAQLQE SLGRAEQRAH HRVYQVLEYE QELSGLLREK RQEVEREHER BACU017304/1-903 QQKEEAQLQE SLGRAGQRAH QKVYQALEYE QELGGLLREK RQEVEREHER ENSTTRP00000000923/1-1458 HQKEEAQLQE SLGRAEQRAH QKVYHVLEYE QELSGLLREK RQEVEKEHER 901 950 ENSP00000278935/1-1460 RLDKMKEEHQ QVMAKAREQY EAEERKQRAE LLGHLTGELE RLQRAHEREL bmy_03287T0/1-804 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018792/1-1448 KMDRMKEEHQ QVVAEARQQY EAEERKQRAE LLGHLTGELE RLRRAHEREL BACU017304/1-903 KMDKMKAEHQ QLVAEAREQY AAEERKQRAE LLGHLTGELE RLRRAHEREL ENSTTRP00000000923/1-1458 KMDRMKEEHQ QVVAEAREQY EAEERKQRAE LLGHLTGELE RLRRAHEREL 951 1000 ENSP00000278935/1-1460 ETVRQEQHKR LEDLRRRHRE QERKLQDLEL DLETRAKDVK ARLALLEVQE bmy_03287T0/1-804 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018792/1-1448 ESVRQEQDRQ LEDLRRRHRE QERKLQDLEV ELETRTKDVK ARLAQLDVQK BACU017304/1-903 ETVRQEQARQ LEDQQRWLRE QERKLQDLEV ELETRTKDVK ARLAQLDVQE ENSTTRP00000000923/1-1458 ETVRQEQDRQ LEDLRRRPRE QERKLQDLEV ELETRTKDVK ARLAQLDVQE 1001 1050 ENSP00000278935/1-1460 ETARREKQQL LDVQRQVALK SEEATATHQQ LEEAQKEHTH LLQSNQQLRE bmy_03287T0/1-804 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018792/1-1448 EAARKEKQQL LDVQRQVVLE SEEATATHQH LEEAKKEHTH LLESNQQLRR BACU017304/1-903 EAARKEKQQL LDVQRQFALE SEEATATHQH LEEAKKEHSH LLESNRQLRR ENSTTRP00000000923/1-1458 EAARKEKQQL LDVQRQFALE REEAAATRQH LEEAKKEHSH LLESNRQLRR 1051 1100 ENSP00000278935/1-1460 ILDELQARKL KLESQVDLLQ AQSQQLQKHF SSLEAEAQKK QHLLREVTVE bmy_03287T0/1-804 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018792/1-1448 ILEELQARKL ELESQVELLQ AQSQRLQKHH SDLEVQAQKK QDLLKELEVK BACU017304/1-903 ILEELQARKL ELESQVDLLQ TQSQRLQKHV SDLEAKAQRK QDLLKELAVE ENSTTRP00000000923/1-1458 ILEELQARKL ELESQVDLLQ AQSQRLQKHV SDLEAKAHRK QDLLKELAVE 1101 1150 ENSP00000278935/1-1460 ENNASPHFEP DLHIEDLRKS LGTNQTKEVS SSL--SQSKE DLYLDSLSSH bmy_03287T0/1-804 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018792/1-1448 DSNTSPHLEP DLLLEDLRRS PRTNQTKEVS FSL--QSKET DLSLD----- BACU017304/1-903 ESNASPRFEP DLHIEDLRKS LGT------- -----SKEET DLSLD----- ENSTTRP00000000923/1-1458 ESDASSRFEP DLHIEDLRKS LGTNQTKEVS FSLSQSKEET DLSLDSL-SR 1151 1200 ENSP00000278935/1-1460 NVWHLLSAEG VALRSAKEFL VQQTRSMRRR QTALKAAQQH WRHELASAQE bmy_03287T0/1-804 ---------G LPLR------ ---------- ---------- ---------- ENSBTAP00000018792/1-1448 SARHYLSAEG VALRNAKEFL MQQSRSMRRR QTALKAAQQH WRQELASAQE BACU017304/1-903 SARHYLSAEG VALRSAKEFL VRQTRSMRRR QTALKAAQQH WRHELASAQE ENSTTRP00000000923/1-1458 SARHYLSAEG VALRSAKEFL VRQTRSMRRR QTALKAAQQH WRHELASAQE 1201 1250 ENSP00000278935/1-1460 VAKDPPGIKA LEDMRKNLEK ETRHLDEMKS AMRKGHNLLK KKEEKLNQLE bmy_03287T0/1-804 ---------- ---LCVPVVD T---LAVGRA TLAQGSSAL- ---------- ENSBTAP00000018792/1-1448 ADKDPPGTKA LEDVCKDLEE ETRHLDEMKS ALWKGHDLLK KKEEKLHQLE BACU017304/1-903 AAKDPPGTKA LEDMCKDLEE ETRHLDEMKS AMRKGHDLLK KKEEKLHQLE ENSTTRP00000000923/1-1458 AAKDPPGTKA LENMCKDLEE ETRHLDEMKS AMRKGHDLLR KKEEKLHQLE 1251 1300 ENSP00000278935/1-1460 SSLWEEASDE GTLGGSPTKK AVTFDLSDMD SLSSESSESF SPPHREW--W bmy_03287T0/1-804 --LWTA---- ---------- ---------- ---------- ---------- ENSBTAP00000018792/1-1448 SSLREEASDE DMLRGLPTKK VVTFDLSDLE DGSSDSSDSC PLPRCEWAGR BACU017304/1-903 SSLWDEASDE DTLRGPPTKK VVTFDLSDLE DGSSDSSESC PLPH------ ENSTTRP00000000923/1-1458 SSLWDEXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX--X 1301 1350 ENSP00000278935/1-1460 RQQRIDSTPS LT-SRKIHGL SHSLRQISSQ LSSVLSILDS LNPQSPPPLL bmy_03287T0/1-804 ---------- ---------- -----QLGSG LQGPFLCLSS LEA------- ENSBTAP00000018792/1-1448 NRERVNLTPS PTFPNKIHYL SSSLQSISSQ LNGVLSVVGS LNAQ-PPPLF BACU017304/1-903 ----IGPTPR PTFPNKIHYL SSSLQRISSQ LNGVLSVLGS LDTQ-PPPLF ENSTTRP00000000923/1-1458 XXXXXGPTLS PTFPNKIHYL SSSLQRISGQ LNGVLSVLGS LNTQ-PPPLF 1351 1400 ENSP00000278935/1-1460 ASMPAQLPPR DPKSTPTPTY YGSLARFSAL SSATPTSTQW AWDSGQGPRL bmy_03287T0/1-804 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018792/1-1448 TSTPVPLPTQ ASRSTLAPP- HPSLTRGSAS SPARPTSAQW TWDPGLGPRL BACU017304/1-903 TSTPAPLPTQ ASRSTPAPS- YPSLARVSAS SPAPPTSTQW AWDPELGPRL ENSTTRP00000000923/1-1458 TSMPSPLPTQ ASRSTPAPS- YPSLVRVSAS SPAPPTSTQW ALDPELGPRL 1401 1450 ENSP00000278935/1-1460 PSSVAQTVDD FLLEKWRKYF PSGIPLLSNS PTPLESRLGY MSASEQLRLL bmy_03287T0/1-804 ---------- -------KCF STPVPYM--- ---------- ---------- ENSBTAP00000018792/1-1448 SSSAAQTVDD FLVEKWRKYF PTGIPFLSSG PAPLENRLGY VSASEQLRRL BACU017304/1-903 SSSMAQTVDD FLVEKWRKYF PTGIPFLSSG PAPLENRLGY VSASEQLRLL ENSTTRP00000000923/1-1458 SSSVAQTVDD FLVEKWRKYF PTGIPFLSSG PAPLENRLGY VSASEQLRLL 1451 1500 ENSP00000278935/1-1460 QHSHSQVPEA GSTTFQGIIE ANRRWLERVK NDPRLPLFSS TPKPKATLSL bmy_03287T0/1-804 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000018792/1-1448 QHPSSRVPQV GTSNLQDMIA ANRKWLEHYK NDPKLPLFSS VPKPAAGSSF BACU017304/1-903 QRPPSQVPEV GSANFQDMIE AHRKWLEHYK NDPKSHLFSS MPKPTAGSGL ENSTTRP00000000923/1-1458 QHPPSQVPEA GSTNFQDMIE AHRKWLEHYK NDPKSHLFSS VPKPTAGSGL 1501 1550 ENSP00000278935/1-1460 LQLGLDEHNR VKVYRF bmy_03287T0/1-804 ---------- ------ ENSBTAP00000018792/1-1448 LQLDLDENNR LKIYHY BACU017304/1-903 LQLGLDENNR LKVYRY ENSTTRP00000000923/1-1458 LQLGLDENNR LKVYRY