KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:04:08 2014 Check: 00 .. Name: ENSTTRP00000008883/1-190 Len: 209 Check: 3030 Weight: 1.00 Name: ENSBTAP00000018301/1-208 Len: 209 Check: 6193 Weight: 1.00 Name: ENSP00000369456/1-194 Len: 209 Check: 2635 Weight: 1.00 Name: bmy_07670T0/1-203 Len: 209 Check: 2208 Weight: 1.00 Name: BACU016887/1-144 Len: 209 Check: 3438 Weight: 1.00 // 1 50 ENSTTRP00000008883/1-190 MAASLSGKKI VFVTGNAKKL EEVIQILGDK FPCTLVAQKI DLPEYQGEPD ENSBTAP00000018301/1-208 MAASLAGKKI VFVTGNAKKL EEVIQILGDK FPCTLVAQKI DLPEYQGEPD ENSP00000369456/1-194 MAASLVGKKI VFVTGNAKKL EEVVQILGDK FPCTLVAQKI DLPEYQGEPD bmy_07670T0/1-203 MAASLSGKKI VFVTGNAKKL EEVIQILGDK FPCTLVAQKI DLPEYQGEPD BACU016887/1-144 MAASLSGKKI VFVTGNAKKL EEVIQILGDK FPCTLVAQKI DLPEYQGEPD 51 100 ENSTTRP00000008883/1-190 EISIRKCQEA ARQVQGPVLV EDTCLCFNAL GGLPGPYXXX XXXXXXXXXL ENSBTAP00000018301/1-208 EISIRKCQEA ARQVQGPVLV EDTCLCFNAL GGLPGPYIKW FLEKLKPEGL ENSP00000369456/1-194 EISIQKCQEA VRQVQGPVLV EDTCLCFNAL GGLPGPYIKW FLEKLKPEGL bmy_07670T0/1-203 EISIQKCQEA ARQVQGPVLV EDTCLCFNAL GGLPGPYIKW FLEKLKPEGL BACU016887/1-144 EISIRKCQEA ARQVQGPVLV EDTCLCFNAL GGLPGPYIKW FLEKLKPEGL 101 150 ENSTTRP00000008883/1-190 HQLLAGFQDK SAYALCTFAL STGDPSEPVR LFRGRTSGQI VVPRGCRDFG ENSBTAP00000018301/1-208 HQLLEGFQDK SAYALCTFAF STGDPNEPVR LFRGRTMGRI VVPRGCRDFG ENSP00000369456/1-194 HQLLAGFEDK SAYALCTFAL STGDPSQPVR LFRGRTSGRI VAPRGCQDFG bmy_07670T0/1-203 HQLLAGFQDK SAYALCTFAL STGDPSEPVH LFRGRTSGRI VVPRGCRDFG BACU016887/1-144 HQLLAGFQDK SAYALCTFAL STGDPSEPVR LFRGRTS--- -VRRDAQG-- 151 200 ENSTTRP00000008883/1-190 WDPCFQPDGY EQTYAEMPKA EKNTISHRFQ ALLELQEYFG ---------- ENSBTAP00000018301/1-208 WDPCFQPDGY EQTYAEMPKA EKNTISHRFR ALLALQEYFS SLTP-GVGDD ENSP00000369456/1-194 WDPCFQPDGY EQTYAEMPKA EKNAVSHRFR ALLELQEYFG SLAA------ bmy_07670T0/1-203 WDPCFQPDGY EQTYAEMPKA EKNTISHRFQ ALLELQEYFG NLTPLGASDD BACU016887/1-144 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000008883/1-190 --------- ENSBTAP00000018301/1-208 HPSWGSGEG ENSP00000369456/1-194 --------- bmy_07670T0/1-203 HSG------ BACU016887/1-144 ---------