KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:30 2014 Check: 00 .. Name: ENSTTRP00000015057/1-1090 Len: 1118 Check: 2873 Weight: 1.00 Name: ENSP00000207549/1-1090 Len: 1118 Check: 5667 Weight: 1.00 Name: ENSBTAP00000018027/1-1090 Len: 1118 Check: 8178 Weight: 1.00 Name: bmy_13803T0/1-935 Len: 1118 Check: 1740 Weight: 1.00 Name: BACU011524/1-1062 Len: 1118 Check: 3617 Weight: 1.00 // 1 50 ENSTTRP00000015057/1-1090 MATLFSQTQR RPPLLRQAIK IRRRRRVRDL PEVLPHRAQE IEPTSHHLSP ENSP00000207549/1-1090 MATLLSHPQQ RPPFLRQAIK I-RRRRVRDL QDPPPQMAPE IQPPSHHFSP ENSBTAP00000018027/1-1090 MAMLFSRPQR RPPLMRQAIK I-RRRGVRDL QDTRPPRAQE IEPSSHHLSP bmy_13803T0/1-935 MATLFSQPRR RPPLLRQAIK I-RRRRVRDL QDPLPLGAQE IEPPSHHLSP BACU011524/1-1062 ---------- ---------- ---------- MDPSHGGPGD EGGGPGAGAP 51 100 ENSTTRP00000015057/1-1090 ---------- -------EER ALLYEEALYT VLYRLGQPEP THVGESAELL ENSP00000207549/1-1090 ---------- -------EQR ALLYEDALYT VLHRLGHPEP NHVTEASELL ENSBTAP00000018027/1-1090 ---------- -------EER ALLYEEALYT VLYRLGQPEP NHVGESSELL bmy_13803T0/1-935 EETLWWVDGG SQGDPAVSQR ALLYEEALYT VLYRLGQPEP AHVGESSELL BACU011524/1-1062 GALLW----- -------EQR ALLYEEALYT VLYRLGQPEP THVGESSELL 101 150 ENSTTRP00000015057/1-1090 RYLQEAFRME PQEHEQMLRQ VQELEKPIFC LKATVKQAKG ILGKDVSGFS ENSP00000207549/1-1090 RYLQEAFHVE PEEHQQTLQR VRELEKPIFC LKATVKQAKG ILGKDVSGFS ENSBTAP00000018027/1-1090 RYLQEAFRME PEEHQQMLKR VQQLEKPVFC LKATVKQAKG ILGKDVSGFS bmy_13803T0/1-935 QYLQEAFRME PEEHQQLLRQ VQELEKPIFC LKATVKQAKG ILGKDVSGFS BACU011524/1-1062 RYLQEAFRVE PEEHRRLLRQ GQELEKPIFC LKATVKQAKG ILGKDVSGFS 151 200 ENSTTRP00000015057/1-1090 DPYCLLGIEQ GVGVPGDSPG LQWRQKAVVR HTIPDEQIHR TQVITQTLNP ENSP00000207549/1-1090 DPYCLLGIEQ GVGVPGGSPG SRHRQKAVVR HTIPEEETHR TQVITQTLNP ENSBTAP00000018027/1-1090 DPYCLLGIEQ GMTVSGGSPG LRRRQKAVVR HTIPEEQTHR TQVITQTLNP bmy_13803T0/1-935 DPYCLLGIEQ GVGVPGGSPG LLRRQKAVVR HTIPEEQIHR TQVITQTLNP BACU011524/1-1062 DPYCLLGIEQ GVGVPGGSPG LQRRQKAVVR HTIPEEQIHR TQVITQTLNP 201 250 ENSTTRP00000015057/1-1090 AWDETFILEF EDISNASFRL DMWDMDTVES VRQKLGELTD LHGLRRIFKE ENSP00000207549/1-1090 VWDETFILEF EDITNASFHL DMWDLDTVES VRQKLGELTD LHGLRRIFKE ENSBTAP00000018027/1-1090 VWDETFILEF EDISNASFHL DMWDMDTVES VRQKLGELTD LHGLRRMFKE bmy_13803T0/1-935 VWDETFILEF EDISNASFHL DMWDMDTVES VRQKLGELTD LHGLRRIFKD BACU011524/1-1062 VWDETFILEF EDISNASFHL DMWDMDTVES VRQKLGELTD LHGLRRIFKE 251 300 ENSTTRP00000015057/1-1090 VRKDKGQDDF LGNVVLRLQD LRCREDQWYS LEPCTETYPD RGQCHLQFQF ENSP00000207549/1-1090 ARKDKGQDDF LGNVVLRLQD LRCREDQWYP LEPRTETYPD RGQCHLQFQL ENSBTAP00000018027/1-1090 ARKDKGQDDF LGNVVLRLQD LRCREDHWYP LEPCTDTYPD RGQCHLQFQF bmy_13803T0/1-935 ARKDKGQDDF LGNVVLRLQD LRCREDQWYP LEPCTETYPD RGQCHLQFQF BACU011524/1-1062 VRKDKGQDDF LGNVVLRLQD LRCREDQWYP LEPCTETYPD RGQCHLQFQF 301 350 ENSTTRP00000015057/1-1090 IHKRXXXXXX XXXXXXXXXX XXXXXXVSHE VTQHQAGSTS WNGLLSPQAA ENSP00000207549/1-1090 IHKRRATSAS RSQPSYTVHL HLLQQLVSHE VTQHEAGSTS WDGSLSPQAA ENSBTAP00000018027/1-1090 IHKRRATKAS RSQPSYTVHL HLLQQLVSHE VTQHQAGSTS WDGSLSSQAA bmy_13803T0/1-935 IHKRRATAAS RSQPSYTVHL HLLQQLVSHE VTQHQAGSTS WDGLLSPQAA BACU011524/1-1062 IHKRRATAAS RSQPCYTVHL RLLQQLVSHE VTQHQAGSTS WDGLLSPQAA 351 400 ENSTTRP00000015057/1-1090 TVLFLHSTQK DLSDFHQSMA QWLAYSRLYQ SLEFPSSCLL YPITSIEYQW ENSP00000207549/1-1090 TVLFLHATQK DLSDFHQSMA QWLAYSRLYQ SLEFPSSCLL HPITSIEYQW ENSBTAP00000018027/1-1090 TILFLHATQK DLSDFHRSLA QWLAYSRLYQ SLEFPSSCLL FPITSIEYQW bmy_13803T0/1-935 TVLFLHSTQK DLSDFHRSMA QWLAYSRLYQ SLEFPSSCLL YPITSIEYQW BACU011524/1-1062 TILFLHSTQK DLSDFHRSMA QWLAYSRLYQ SLEFPSSCLL YPITSIEYQW 401 450 ENSTTRP00000015057/1-1090 IQGRLKAEQL EELAASFSSL LAYGLSLIRR FRSVFPLSVS DSPARLQSLL ENSP00000207549/1-1090 IQGRLKAEQQ EELAASFSSL LTYGLSLIRR FRSVFPLSVS DSPARLQSLL ENSBTAP00000018027/1-1090 IQGRLKAEQL EELATSFSSL LAYGLSLIRR FRSVFPLSVP DSPARLQSLL bmy_13803T0/1-935 IQGRLKAEQL EELAASFSSL LAYGLSLIQR FRSVFPLSVS DSPARLQSLL BACU011524/1-1062 IQGRLKAEQL EELAASFSSL LAYGLSLIRR FRSVFPLSVP DSPARLQSLL 451 500 ENSTTRP00000015057/1-1090 RVLVQMCKMK AFGELCPERG PLPRLVTEAL QTGTTEWFHL KQQHHQPMVQ ENSP00000207549/1-1090 RVLVQMCKMK AFGELCPNTA PLPQLVTEAL QTGTTEWFHL KQQHHQPMVQ ENSBTAP00000018027/1-1090 RVLVQMCKMK AFGELCPNSD PLPSLVSEAL RAGTVGWFHL KQQHHQPMVQ bmy_13803T0/1-935 RVLVQMCKMK AFGELCPESG PLPRLVTQAL RTGTTEWFHL KQQHHQPMVQ BACU011524/1-1062 RVLVQMCKMK AFGEVCPESG PLPRLVTEAL RTGTTEWFHL KQHHHQPMVQ 501 550 ENSTTRP00000015057/1-1090 GMLEEGKALL NLVQDIIGDL HQCQRTWSKI FHNVLKIDLF SMAFLELQWL ENSP00000207549/1-1090 GIPEAGKALL GLVQDVIGDL HQCQRTWDKI FHNTLKIHLF SMAFRELQWL ENSBTAP00000018027/1-1090 GLLEMGKALL SLVQDIIGDL HQCQRTWNKI FHNVLKIDLF SMAFLELQWL bmy_13803T0/1-935 ---------- ---------- ---------- ---------- ---------- BACU011524/1-1062 GMLEAGKALL SLVQDIIGDL HQCQRTWNKI FHNVLKIDLF SMAFLELQWL 551 600 ENSTTRP00000015057/1-1090 VAKRVQDHIA VVSGAVTPEM GESLFQLYIS LKELYQLGPV LSERDGVLAL ENSP00000207549/1-1090 VAKRVQDHTT VVGDVVSPEM GESLFQLYIS LKELCQLRMS SSERDGVLAL ENSBTAP00000018027/1-1090 VAKRVQDHIA AVGGSVTLEV GESLFQLYVS LKELYQLGPL PSERDGVLAL bmy_13803T0/1-935 ---------- ---------- ---------- ---------- ---------- BACU011524/1-1062 VAKRVQDHIA VVSSAVTPEM GESLFQLYVS LKELYQLGPV PSERDGVLAL 601 650 ENSTTRP00000015057/1-1090 EGFHHWFQPA VPSWLQKTYS VALERVQRAV QMDEXXXXXX XXXXXXXXXX ENSP00000207549/1-1090 DNFHRWFQPA IPSWLQKTYN EALARVQRAV QMDELVPLGE LTKHSTSAVD ENSBTAP00000018027/1-1090 EGFHRWFRPA IPSWLQKTYS VALARVQRAV QMDQLVPLGE LTKHSTSAVD bmy_13803T0/1-935 ---------- ---------- ---------- ---------- ---------- BACU011524/1-1062 EGFHQWFQPA IPSWLQKTYS VALARVQRAV QMDELVPLGE LTKHSTSAVD 651 700 ENSTTRP00000015057/1-1090 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000207549/1-1090 LSTCFAQISH TARQLDWPDP EEAFMITVKF VEDTCRLALV YCSLIKARAR ENSBTAP00000018027/1-1090 LSTCFAQISH TAQQLDWPDP EEAFMITVKF VEDTCRLALV YCSLIKARAR bmy_13803T0/1-935 ---------- ---------- ---------- --DTCRLALV YCSLIKARAR BACU011524/1-1062 LSTCFAQISH TAQQLDWPDP EEAFMITVKF VEDTCRLALV YCSLIKARAR 701 750 ENSTTRP00000015057/1-1090 XXXXXXXXQG QAANMLCVVV NDMEQLRLVI GKLPTQLAWE ALEQRVGAVL ENSP00000207549/1-1090 ELSSGQKDQG QAANMLCVVV NDMEQLRLVI GKLPAQLAWE ALEQRVGAVL ENSBTAP00000018027/1-1090 ELSAGQKDQG QAANMLCVVV NDMEQLRLVI GKLPTQLAWE ALEQRVGPVL bmy_13803T0/1-935 ELSAGQKDQG QAANRLCVVV NDMEQLRLVI GRLPTQLAWE ALEQRVGAVL BACU011524/1-1062 ELSAGQKDQG QAANRLCVVV NDMEQLRLVI GKLPTQLAWE VLEQRVGAVL 751 800 ENSTTRP00000015057/1-1090 EQGQLQNTLH AQLQGALAGL GHEIRTGVRT LAEQLEVGIA KHIQKLVGLK ENSP00000207549/1-1090 EQGQLQNTLH AQLQSALAGL GHEIRTGVRT LAEQLEVGIA KHIQKLVGVR ENSBTAP00000018027/1-1090 EQEQLQNTLH AQLQGALAGL GHEIRTGVRT LAEQLEAGIA KHIQKLVGIR bmy_13803T0/1-935 EQGQLQNTLH AQLQGALAGL GHEIRTGVRT LAEQLEVGIA KHIQKLVGIK BACU011524/1-1062 EQGQLQNTLH AQLQGALAGL GHEIRTGVRT LAEQLEVGIA KHIQKLVGIK 801 850 ENSTTRP00000015057/1-1090 ESVLPEDAVL PLMKFLEVEL CYMNTNLVQE NFNXXXXXXX XXXXXXXXXX ENSP00000207549/1-1090 ESVLPEDAIL PLMKFLEVEL CYMNTNLVQE NFSSLLTLLW THTLTVLVEA ENSBTAP00000018027/1-1090 ESVLPEDAIL PLMKFLEVEL CYMNTNLVQE NFSSLLSLLW THTLTVLAEV bmy_13803T0/1-935 ESVPPEDAIL PLMKFLEVKL CYMNTNLVQE NFSSLLTLLW THTLTVLAEV BACU011524/1-1062 ESVPPEDAIL PLMKFLEVKL CYMNTNLVQE NFSSLLTLLW THTLTVLAEV 851 900 ENSTTRP00000015057/1-1090 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000207549/1-1090 AASQRSSSLA SNRLKIALQN LEICFHAEGC GLPPKALHTA TFQALQRDLE ENSBTAP00000018027/1-1090 AASQRSCPRA CSRLKFALQN LEVCFYAEGC GLPPEALHTA TFQALQRDLE bmy_13803T0/1-935 AASQRSCPLA SSRLKIALQN LEICFYAEGC GLPPEALHTA TFQALQRDLE BACU011524/1-1062 AASQRSCPLA SSRLKIALQN LEICFYAEGC GLPPEALHTA TFQALQRGLE 901 950 ENSTTRP00000015057/1-1090 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000207549/1-1090 LQAASSRELI RKYFCSRIQQ QAETTSEELG AVTVKASYRA SEQKLRVELL ENSBTAP00000018027/1-1090 LQAASSRELI HKYFCSRLQQ QAATTSEELG AVTVKASYRP SEQKLRVELL bmy_13803T0/1-935 LQAASSRELI QKYFCSRIQQ QAETTSEELG AVTVKASYRA SEQKLHVELL BACU011524/1-1062 LQAASSRELI QKYFCSRIQQ QAGTTSEELG AVTVKASYRA SEQKLHVELL 951 1000 ENSTTRP00000015057/1-1090 XXXXLLPLDS NGSSDPFVQL TLEPRHEFPE LAPRESQKHK KELHPLFDET ENSP00000207549/1-1090 SASSLLPLDS NGSSDPFVQL TLEPRHEFPE LAARETQKHK KDLHPLFDET ENSBTAP00000018027/1-1090 SASNLLPLDS NGSSDPFVQL TLEPRHEFPE LAPRETQKHK KDLHPLFDET bmy_13803T0/1-935 SASSLLPLDA NGSSDPFVQL TLEPRHEFPE LAPRETQKHK KDLHPLFDET BACU011524/1-1062 SASSLLPLDS NGSSDPFVQL TLEPRHEFPE LAPRETQKHK KDLHPLFDET 1001 1050 ENSTTRP00000015057/1-1090 FEFLVPAEPC QKDGACLLLT VLDHDTLGAD DLE-EAFLPL CSVPGLTGTX ENSP00000207549/1-1090 FEFLVPAEPC RKAGACLLLT VLDYDTLGAD DLEGEAFLPL REVPGLSGSE ENSBTAP00000018027/1-1090 FEFLVPAEPC QKDGACLLLS VLDHDTLGTD DLEGEAFLPL CSVPGLTGME bmy_13803T0/1-935 FEFLVPAEPC QRDGACLLLT VLDHDTLGAD DLEGEAFLPL RSVPGLTGTE BACU011524/1-1062 FEFLVPAEPC QKDGACLLLT VLDHDTLGAD DLEGEAFLPL RSVPGLTGTE 1051 1100 ENSTTRP00000015057/1-1090 XXXXXXXXXX XXXXXXXXXD PILQLLESRK GDREAQVFVR LRRQRAKQAS ENSP00000207549/1-1090 EPGEVPQTRL PLTYPAPNGD PILQLLEGRK GDREAQVFVR LRRHRAKQAS ENSBTAP00000018027/1-1090 EPGEVPQTRL PLTYPAPNGD PILQLLESRK GDREAQAFVR LRRQRAKKAS bmy_13803T0/1-935 EPGDVPQTRL PLTYPAPNGD PILQLLESRK GDREAQVFVR LRRQRAKQAS BACU011524/1-1062 EPGDVPQTRL PLTYPAPNGD PILQLLEGRK GDREAQVFVR LRRQRAKQAS 1101 1150 ENSTTRP00000015057/1-1090 QHAPWPGR-- -------- ENSP00000207549/1-1090 QHALRPAP-- -------- ENSBTAP00000018027/1-1090 QHGPRPGR-- -------- bmy_13803T0/1-935 QHAPWPGQQQ RGLGPWEA BACU011524/1-1062 QHAP------ --------