KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:27 2014 Check: 00 .. Name: ENSP00000401980/1-540 Len: 560 Check: 3381 Weight: 1.00 Name: ENSBTAP00000018013/1-520 Len: 560 Check: 3818 Weight: 1.00 Name: ENSTTRP00000007009/1-501 Len: 560 Check: 1730 Weight: 1.00 Name: bmy_07689T0/1-527 Len: 560 Check: 8700 Weight: 1.00 Name: BACU016897/1-532 Len: 560 Check: 3393 Weight: 1.00 // 1 50 ENSP00000401980/1-540 MPFAEDKTYK YICRNFSNFC NVDVVEILPY LPCLTARD-- ---QDRLRAT ENSBTAP00000018013/1-520 MTFAEDKTYE YIRYNHSNFC NIHVLDILPH LSCLTIND-- ---QDRLRAH ENSTTRP00000007009/1-501 MTFAEDKTYQ YIRDHHGNFC NIHVLEILPY LSCLTISD-- ---QDRLRAS bmy_07689T0/1-527 MTFAEDKTYQ YIRNHHGNFC NIHVLEILPY LSCLTTSD-- ---QDRLRAS BACU016897/1-532 MTFAEDKTYQ YIRNHHGNFC NIHVLEILPY LSCLTTSDQG CVFQDRLRAS 51 100 ENSP00000401980/1-540 CTLSGNRDTL WHLFNTLQRR PGWVEYFIAA LRGCELVDLA DEVASVYQSY ENSBTAP00000018013/1-520 FDRWGNQGTL WNLFDSLRRR NGWVDSFIRA LRACEHTVLA DEVAHVYQSN ENSTTRP00000007009/1-501 YERWGNQGTL WDLFNSLRRR NGWVPSFIGA LRACELSSLA DEVDRVYQSN bmy_07689T0/1-527 YERWGNQGTL WDLFNSLRRR NGWVPSFIGA LRACELSSLA DEVDRVYQSN BACU016897/1-532 YERWGNQGTL WDLFNSLRRR NGWVPSFIGA LRACELSSLA DEVDRVYQSN 101 150 ENSP00000401980/1-540 QPRTSDRPPD PLEPPSLPAE RPGPPTPAAA HSIPYNSCRE KEPSYPMPVQ ENSBTAP00000018013/1-520 LPRSPNHPPA PLEPPSIPAE IPRPSTPAVA PSIPDNGHTE YEPSYPVPVQ ENSTTRP00000007009/1-501 LLRNPNNSPS PLERPSIPAG VPGPSTPAVA PSIPCNGYRE DEPSYPMPVQ bmy_07689T0/1-527 LLRNPNHPPS PLERPSVSAG VPGPSTPAVA PSIPCNGYRE DEPSYPMPVQ BACU016897/1-532 LLRNPNHPPS PLERPSVSAG VPGPSTPAVA PSIPCNGYRE DEPSYPMPVQ 151 200 ENSP00000401980/1-540 ETQAPESPGE NSEQALQTLS PRAIPRNPDG GPLESSSDLA ALSPLTSSGH ENSBTAP00000018013/1-520 DTQPPESLGE NSEKAPQPSH SGAVLKRL-G GPLEPLSDTV ALSTLTSSVH ENSTTRP00000007009/1-501 DTQSPESLGE SSKKAPQPPS SGAVLKRL-G GPLQPSSDMV ALSPLTCSGH bmy_07689T0/1-527 DTQPPESLGE SSKKAPQPPS SGAVLKRL-G GPLQPSSDMV ALSPLTCSGH BACU016897/1-532 DTEPPESLGE SSKKAPQPPS SGAVLKRL-G GPLQPSSDMV ALSPLTCSGH 201 250 ENSP00000401980/1-540 QEQDTELGST HTAGATSSLT PSRGPVSPSV SFQPLARSTP RASRLPGPTG ENSBTAP00000018013/1-520 QEQDTELGNT HTAGVVSSST SLRGPVSPTV SFQPLARSTP RASRLPGPPV ENSTTRP00000007009/1-501 QEQDTELGTT HTAGMVSSFT SSYGPVSPTV SFQPLVRSTP RASCLPGPPV bmy_07689T0/1-527 QEQDTELGTT HTAGVVSSFT SSYGPVSPTV SFQPLVRSTP RASRFPGPPV BACU016897/1-532 QEQDTELGTT HTAGMVSSFT SSYGPVSPTV SFQPLVRSTP RASRLPGPPV 251 300 ENSP00000401980/1-540 SVVSTGTSFS SSSPGLASAG AAEGKQGAES DQAEPIICSS GAEAPANSLP ENSBTAP00000018013/1-520 SAPSVGTSSS ST--GLTSAG GA-------G DQTEGTICSS GAGVPNNPMA ENSTTRP00000007009/1-501 SAPSIGTSSS SFT-GLASAG GA-------G DQAEGTICSS GAG------- bmy_07689T0/1-527 SAPSIGTSFS T---GLASAG GA-------G DQAEDTICSS GAGVPTNSLT BACU016897/1-532 SAPSIGTSSS T---GLASAG GA-------A DQAEDTICSS GAGVPTNSLT 301 350 ENSP00000401980/1-540 SKVPTTLMPV NTVALKVPAN PASVSTVPSK LPTSSKPPGA VPSNALTNPA ENSBTAP00000018013/1-520 A--------- STVPSKVPTN SAFGSSVPSK LPTSLKPPGA VPTN----LA ENSTTRP00000007009/1-501 ---------- ------VPTN SAFGSTVPSK LSTSLKPPGA MPINVLTSLA bmy_07689T0/1-527 A--------- STVPSKVPTN SAFGSTVPSK LSTSLKPPGA MPTNVLTSLA BACU016897/1-532 A--------- STVPSKVPTN SAFGSTVSSK LSTSLKPPGA MPTNVLTSLA 351 400 ENSP00000401980/1-540 PSKLPINSTR AGMVPSKVPT S--------- -MVLTKVSAS TVPTDGSSRN ENSBTAP00000018013/1-520 PSRLPINSVR SGMVPPKVPT SGIPDHRIPA STVPSKVPAN TRLTIRSSNR ENSTTRP00000007009/1-501 PSKLPINSVH SGVVPLKVPT G--------- -TVPRKLPAN TGPTIRNSNR bmy_07689T0/1-527 PSKLPINSVR SGMVPPKVPT GLVPDHRKHM CTVPRKLPAN TGPTIRNSNR BACU016897/1-532 PSKLPINSVR SGMVPPKVPT GLVPDHRKHM CTVPRKLPAN TGPTIRNSNR 401 450 ENSP00000401980/1-540 --EETPAAPT PAG-ATGGSS AWLDSSSENR GLGSELSKPG VLASQVDS-P ENSBTAP00000018013/1-520 LVKETPASPV PTGTATGGTS LWPDSSSDCC GSELELSKPG RLVSRMDSQP ENSTTRP00000007009/1-501 LVEETPASPA PTGTATGGTS PWPDSSSDCW GSELELSKPG RLVSRMDSQP bmy_07689T0/1-527 LVEETPASPG PTGTATGGTS PWPDSSSDCW GSELELSKPG RLVSRMDSQP BACU016897/1-532 LVEETPASPG PTGTATGGTS PWPDSSSDCW GSELELSKPG RLISRMDSQP 451 500 ENSP00000401980/1-540 FSGCFEDLAI SASTSLGMGP CHGPEENEYK SEGTFGIHVA ENPSIQLLEG ENSBTAP00000018013/1-520 FSVCSADLAI SHSNSLGMGP DNAPEENEYV SEDTIRIH-- ENPSTSLLGD ENSTTRP00000007009/1-501 FSGCSADLAI SHSNSLGVGP DNAPEENEYE SEDTIRIH-- GGPSTPILGD bmy_07689T0/1-527 FSGCSADLAI SHSNSLGVGP DNAPEENEYE SEDTIRIH-- GGPSTPILGD BACU016897/1-532 FSGCSADLAI SHSNSLGVGP DNAPEENEYE SEDTIRIH-- GGPSTPILGD 501 550 ENSP00000401980/1-540 NPGPPADPDG GPRPQADRKF QEREVPCHRP SPGALWLQVA VTGVLVVTLL ENSBTAP00000018013/1-520 SPGTYTTP-- ---EEDELK- ---ELPVVRT MPWASWLGVA MAGALLV-LL ENSTTRP00000007009/1-501 SPGTHTAP-- EFREEEEL-- ------CCRN LPWAPWLGVA VAGVLLAALL bmy_07689T0/1-527 SPGTHTIP-- GFREEEELE- ---ELLVVRT LPWAPWLGVA VAGVLLAALL BACU016897/1-532 SPGTHTTP-- GFREEEELE- ---ELLVVRT SPWAPWLGVA VAGVLLAALL 551 600 ENSP00000401980/1-540 VVLYRRRLH- ENSBTAP00000018013/1-520 ASLYRRRLPQ ENSTTRP00000007009/1-501 ATLYRRRPLQ bmy_07689T0/1-527 ATLHRRRLLQ BACU016897/1-532 ATLHRRRLLQ