KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:03:14 2014 Check: 00 .. Name: ENSTTRP00000006067/1-1133 Len: 1575 Check: 1236 Weight: 1.00 Name: bmy_14038T0/1-1171 Len: 1575 Check: 5511 Weight: 1.00 Name: BACU006991/1-1369 Len: 1575 Check: 6219 Weight: 1.00 Name: ENSP00000264659/1-1183 Len: 1575 Check: 8131 Weight: 1.00 Name: ENSBTAP00000017913/1-1193 Len: 1575 Check: 7953 Weight: 1.00 // 1 50 ENSTTRP00000006067/1-1133 -----VPLSP L--------- ---------- ---------- ADPERSSPPM bmy_14038T0/1-1171 MTPPSAVPRH L--------- ---------- ---------- RDPERSSPPM BACU006991/1-1369 ----MCVVHL W--------- ---------- ---------- GDPERSSPPM ENSP00000264659/1-1183 -----MGNAP S--------- ---------- ---------- QDPERSSPPM ENSBTAP00000017913/1-1193 MQPWQCLRRF ALAWWERTAE GRARSPREEA GPRDPGGRGE PDPERSSPPM 51 100 ENSTTRP00000006067/1-1133 LSADDAEYPR EYRTLGGGGG GGGSGGRRFS NVGLVHTSER RHTVIAAQSL bmy_14038T0/1-1171 LSADDAEYPR EYRTLGGGGG GGGSGGRRFS NVGLVHTSER RHTVIAAQSL BACU006991/1-1369 LSADDAEYPR EYRTLGGGGG GGGSGGRRFS NVGLVHTSER RHTVIAAQSL ENSP00000264659/1-1183 LSADDAEYPR EYRTL-GGGG GGGSGGRRFS NVGLVHTSER RHTVIAAQSL ENSBTAP00000017913/1-1193 LSADDAEYPR EYRTL-GGGG GGGSGGRRFS NVGLVHTSER RHTVIAAQSL 101 150 ENSTTRP00000006067/1-1133 EALSGLQKAD ADRKRDAFMD HLKSKYPQHA LALRSQQDRM RE-QPNYWSF bmy_14038T0/1-1171 EALSGLQKAD ADRKRDAFMD HLKSKYPQHA LALRSQQDRM RE-QRPRITI BACU006991/1-1369 EALSGLQKAD ADRKRDAFMD HLKSKYPQHA LALRSQQDRM RE-QVGGWTV ENSP00000264659/1-1183 EALSGLQKAD ADRKRDAFMD HLKSKYPQHA LALRGQQDRM RE-QPNYWSF ENSBTAP00000017913/1-1193 EALSGLQKAD ADRKRDAFMD HLKSKYPQHA LALRGQQDRM REQQPNYWSF 151 200 ENSTTRP00000006067/1-1133 ---------- ---------- ---------- --KTRSSRHT QGAQPGLADQ bmy_14038T0/1-1171 SSLISISSQT TGVSSGQSEG VIPGSSCPAL PLQTRSSRHT QGAQPGLADQ BACU006991/1-1369 DPVCLLSSLC SHLHGDSA-- ----PSGAGQ PAQTRSSRHT QGAQPGLADQ ENSP00000264659/1-1183 ---------- ---------- ---------- --KTRSSRHT QGAQPGLADQ ENSBTAP00000017913/1-1193 ---------- ---------- ---------- --KTRSSRHT QGAQPGLADQ 201 250 ENSTTRP00000006067/1-1133 AAKLSYASAE SLETMSEAEL PLGFSRMNRF RQSLPLSRST SQTKLRSPGV bmy_14038T0/1-1171 AAKLSYASAE SLETMSEAEL PLGFSRMNRF RQSLPLSRST SQTKLRSPGV BACU006991/1-1369 AAKLSYASAE SLETMSEAEL PLGFSRMNRF RQSLPLSRST SQTKLRSPGV ENSP00000264659/1-1183 AAKLSYASAE SLETMSEAEL PLGFSRMNRF RQSLPLSRSA SQTKLRSPGV ENSBTAP00000017913/1-1193 AAKLSYASAE SLETMSEAEL PLGFSRMNRF RQSLPLSRSA SQTKLRSPGV 251 300 ENSTTRP00000006067/1-1133 LFLQFGEETR RVHITHEVSS LDTLHALIAH MFPQKLTMGM LKSPNTAILI bmy_14038T0/1-1171 LFLQFGEETR RVHITHEVSS LDTLHALIAH MFPQKLTMGM LKSPNTAILI BACU006991/1-1369 LFLQFGEETR RVHITHEVSS LDTLHALIAH MFPQKLTMGM LKSPNTAILI ENSP00000264659/1-1183 LFLQFGEETR RVHITHEVSS LDTLHALIAH MFPQKLTMGM LKSPNTAILI ENSBTAP00000017913/1-1193 LFLQFGEETR RVHITHEVSS LDTLHALIAH MFPQKLTMGM LKSPNTAILI 301 350 ENSTTRP00000006067/1-1133 KDEARNVFYE LEDVRDIQDR SIIKIYRKEP LYAAFPGSHL TNGDLRREMV bmy_14038T0/1-1171 KDEARNVFYE LEDVRDIQDR SIIKIYRKEP LYAAFPGSHL TNGDLRREMV BACU006991/1-1369 KDEARNVFYE LEDVRDIQDR SIIKIYRKEP LYAAFPGSHL TNGDLRREMV ENSP00000264659/1-1183 KDEARNVFYE LEDVRDIQDR SIIKIYRKEP LYAAFPGSHL TNGDLRREMV ENSBTAP00000017913/1-1193 KDEARNVFYE LEDVRDIQDR SIIKIYRKEP LYAAFPGSHL TNGDLRREMV 351 400 ENSTTRP00000006067/1-1133 YASRESSPTR RLNNLSA-PH LASSSPPPGL PLGLP----S GS-SRSRLSY bmy_14038T0/1-1171 YASRESSPTR RLNNLSPAPH LASGSPPPGL PSGLP----S GSPSRSRLSY BACU006991/1-1369 YASRESSPTR RLNNLSPAPH LASGSPPPGL PSGLP----S GSPSRSRL-- ENSP00000264659/1-1183 YASRESSPTR RLNNLSPAPH LASGSPPPGL PSGLPSGLQS GSPSRSRLSY ENSBTAP00000017913/1-1193 YASRESSPTR RLNNLSPAPH LASGSPPPGL PSGLP----S GSPSRSRLSY 401 450 ENSTTRP00000006067/1-1133 AGGRPPSYAG SPVHHAAERL GSAPAAPGVS PSPSAILERR DVKPDEDLAG bmy_14038T0/1-1171 AGGRPPSYAG SPVHHAAERL GSAPAAPGVS PSPSAILERR DVKPDEDLAG BACU006991/1-1369 ---------- ---------- ---------- ---------- ---------- ENSP00000264659/1-1183 AGGRPPSYAG SPVHHAAERL GGAPAAQGVS PSPSAILERR DVKPDEDLAS ENSBTAP00000017913/1-1193 AGGRPPSYAG SPVHHAAERL GGAPAAPGVS PSPSAILERR DVKPDEDLAG 451 500 ENSTTRP00000006067/1-1133 KAGGMVLVKG EGLYADPYGL LHEGRLSLAA AAGDPFAYPG AGGLYKRGSV bmy_14038T0/1-1171 KAGGMVLVKG EGLYADPYGL LHEGRLSLAA AAGDPFAYPG AGGLYKRGSV BACU006991/1-1369 ---------- ---------- ---------- ---------- ---------- ENSP00000264659/1-1183 KAGGMVLVKG EGLYADPYGL LHEGRLSLAA AAGDPFAYPG AGGLYKRGSV ENSBTAP00000017913/1-1193 KAGGMVLVKG EGLYADPYGL LHEGRLSLAA AAGDPFAYPG AGGLYKRGSV 501 550 ENSTTRP00000006067/1-1133 RSLSTYSAAA LQSDLEDSLY KAAAGGGPLY GDGYGFRLPP SSPQKLADVA bmy_14038T0/1-1171 RSLSTYSAAA LQSDLEDSLY KAAAGGGPLY GDGYGFRLPP SSPQKLADVA BACU006991/1-1369 ---------- ---------- ---------- ---------- ---------- ENSP00000264659/1-1183 RSLSTYSAAA LQSDLEDSLY KAAGGGGPLY GDGYGFRLPP SSPQKLADVA ENSBTAP00000017913/1-1193 RSLSTYSAAA LQSDLEDSLY KAA-GGGPLY GDGYGFRLPP SSPQKLADVT 551 600 ENSTTRP00000006067/1-1133 APPGGPPPPH SPYSGPPSRG SPVRQSFRKD SGSSSVFAES PGGKTRSTGG bmy_14038T0/1-1171 APPGGPPPPH SPYSGPPSRG SPVRQSFRKD SGSSSVFAES PGGKTRSTGG BACU006991/1-1369 ---------- SPYSGPPSRG SPVRQSFRKD SGSSSVFAES PGGKTRSTGA ENSP00000264659/1-1183 APPGGPPPPH SPYSGPPSRG SPVRQSFRKD SGSSSVFAES PGGKTRSAGS ENSBTAP00000017913/1-1193 APPGGPPPPH SPYSGPPSRG SPVRQSFRKD SGSSSVFAES PGGKTRSTGG 601 650 ENSTTRP00000006067/1-1133 SSTAGVPPPE LFPGPGERPL VGFGPPVPAK DTETRERMEA MEKQIASLTG bmy_14038T0/1-1171 SSTAGAPPPE LFPGPGERPL VGFGPPVPAK DTETRERMEA MEKQIASLTG BACU006991/1-1369 SSTAGAPPPE LFPGPGERPL VGFGPPVPAK DTETRERMEA MEKQIASLTG ENSP00000264659/1-1183 ASTAGAPPSE LFPGPGERSL VGFGPPVPAK DTETRERMEA MEKQIASLTG ENSBTAP00000017913/1-1193 SSTAGAPPPE LFPGPGERPL VGFGPPAPAK DTETRERMEA MEKQIASLTG 651 700 ENSTTRP00000006067/1-1133 LVQSALLRGS EPETPSEKIE GSNGAATPSA PCGSGSRSSG ATPVSGPPPP bmy_14038T0/1-1171 LVQSALLRA- ---------- ---------- -CGSGSRSSG ATPVSGPPPP BACU006991/1-1369 LVQSALLRGS EPETPSEKIE GSNGAATPSA PCGSGSRSSG ATPVSGPPPP ENSP00000264659/1-1183 LVQSALLRGS EPETPSEKIE GSNGAATPSA PCGSGGRSSG ATPVSGPPPP ENSBTAP00000017913/1-1193 LVQSALLRGS EPETPSEKIE GSNGAATPSA PCGSGSRSSG ATPVSGPPPP 701 750 ENSTTRP00000006067/1-1133 SASSTPAGQP TAINRLQMQL HLRGLQNSTN DLRSQLQQLR KLQLQNLESL bmy_14038T0/1-1171 SASSTPAGQP TAINRLQMQL HLRGLQNSTN DLRSQLQQLR KLQLQNLESL BACU006991/1-1369 SASSTPAGQP TAINRLQMQL HLRGLQNSTN DLRSQLQQLR KLQLQNLESL ENSP00000264659/1-1183 SASSTPAGQP TAVSRLQMQL HLRGLQNSAS DLRGQLQQLR KLQLQNQESV ENSBTAP00000017913/1-1193 PASSTPAGQP TAINRLQMQL HLRGLQNSTN DLRSQLQQLR KLQLQNLESL 751 800 ENSTTRP00000006067/1-1133 RALLKGTEAE LSMRVSEAAR RQEDPLQRQR TLVEEERLRY LNDEELITQQ bmy_14038T0/1-1171 RALLKGTEAE LSMRVSEAAR RQEDPLQRQR TLVEEERLRY LNDEELITQQ BACU006991/1-1369 RALLKGTEAE LSMRVSEAAR RQEDPLQRQR TLVEEERLRY LNDEELITQQ ENSP00000264659/1-1183 RALLKRTEAE LSMRVSEAAR RQEDPLQRQR TLVEEERLRY LNDEELITQQ ENSBTAP00000017913/1-1193 RALLKGTEAE LSMRVSEAAR RQEDPLQRQR TLVEEERLRY LNDEELITQQ 801 850 ENSTTRP00000006067/1-1133 LN-------- ---------- ---------- --DLEKSVEK IQRDVSHNHR bmy_14038T0/1-1171 LN-------- ---------- ---------- --DLEKSVEK IQRDVSHNHR BACU006991/1-1369 LNCPMSLCPL PAFILACDPC KLTLEYSGGA FSDLEKSVEK IQRDVSHNHR ENSP00000264659/1-1183 LN-------- ---------- ---------- --DLEKSVEK IQRDVSHNHR ENSBTAP00000017913/1-1193 LN-------- ---------- ---------- --DLEKSVEK IQRDVSHNHR 851 900 ENSTTRP00000006067/1-1133 LVPGPELEEK ALVLKQLGET LTELKAHFPG LQSKMRVVLR VEVEAVKFLK bmy_14038T0/1-1171 LVPGPELEEK ALVLKQLGET LTELKAHFPG LQSKMRVVLR VEVEAVKFLK BACU006991/1-1369 LVPGPELEEK ALVLKQLGET LTELKAHFPG LQSKMRVVLR VEVEAVKFLK ENSP00000264659/1-1183 LVPGPELEEK ALVLKQLGET LTELKAHFPG LQSKMRVVLR VEVEAVKFLK ENSBTAP00000017913/1-1193 LVPGPELEEK ALVLKQLGET LTELKAHFPG LQSKMRVVLR VEVEAVKFLK 901 950 ENSTTRP00000006067/1-1133 EEPQRLDGLL KRCRGVTDTL AQIRRQVDEC ACPRPSNLLN QSLKMVTAET bmy_14038T0/1-1171 EEPQRLDGLL KRCRGVTDTL AQIRRQVDEG AWPPPSNLLN QSPKKVTAET BACU006991/1-1369 EEPQRLDGLL KRCRGVTDTL AQIRRQVDEG AWPPPSNLLN QSPKKVTAET ENSP00000264659/1-1183 EEPQRLDGLL KRCRGVTDTL AQIRRQVDEG VWPPPNNLLS QSPKKVTAET ENSBTAP00000017913/1-1193 EEPQRLDGLL KRCRGVTDTL AQIRRQVDEG VWPPPSNLLS QSPKKMTAET 951 1000 ENSTTRP00000006067/1-1133 DFNMSLHFEM PPPRPRLK-H DMSGQXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14038T0/1-1171 DFNKSLDFEM PPPSPPLKLH EMSGPTEGAP PTPKAGNPTK GLDTPGKRSV BACU006991/1-1369 DFNKSLDFEM PPPSPPLKLH EMSGPTEGAP PTPKAGNPTK GLDTPGKRSV ENSP00000264659/1-1183 DFNKSVDFEM PPPSPPLNLH ELSGPAEGAS LTPKGGNPTK GLDTPGKRSV ENSBTAP00000017913/1-1193 DFNKSLDFEM PPPSPPLNLH ELSGPTEGAP PAPKAGNPTK GLDTPGKRSM 1001 1050 ENSTTRP00000006067/1-1133 XXXXXXXAAE RDWEEKRAAL TQYSAKDINR LLEETQAELL KAIPDLDCGS bmy_14038T0/1-1171 DKAVSVEAAE RDWEEKRAAL TQYSAKDINR LLEETQAELL KAIPDLDCGS BACU006991/1-1369 DKAVSVEAAE RDWEEKRAAL TQYSAKDINR LLEETQAELL KAIPDLDCGS ENSP00000264659/1-1183 DKAVSVEAAE RDWEEKRAAL TQYSAKDINR LLEETQAELL KAIPDLDCAS ENSBTAP00000017913/1-1193 DKAVSVEAAE RDWEEKRAAL TQYSAKDINR LLEETQAELL KAIPDLDCAS 1051 1100 ENSTTRP00000006067/1-1133 KAHPGPAPTP DHKPPKLPHG QKATPRTEPS GRRGSXXXXX XXXXXXXXXX bmy_14038T0/1-1171 KAHPGPAPTP DHKPPKMPHS QKATPRTEPS GRRGSDELTV PRYRTEKPSK BACU006991/1-1369 KAHPGPAPTP DHKPPKMPHG QKATPRTEPS GRRGSDELTV PRYRTEKPSK ENSP00000264659/1-1183 KAHPGPAPTP DHKPPKAPHG QKAAPRTEPS GRRGSDELTV PRYRTEKPSK ENSBTAP00000017913/1-1193 KAHPGPAPTP DHKPPKTPHG QKAAPRTEPS GRRGSDELTV PRYRTEKPSK 1101 1150 ENSTTRP00000006067/1-1133 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_14038T0/1-1171 SPPPPPPRRS FPSSHGLTTT RTGEVVVTSK KDSAFIKKAE SEELEVQKPQ BACU006991/1-1369 SPPPPPPRRS FPSSHGLTTT RTGEVVVTSK KDSAFIKKAE SEELEVQKPQ ENSP00000264659/1-1183 SPPPPPPRRS FPSSHGLTTT RTGEVVVTSK KDSAFIKKAE SEELEVQKPQ ENSBTAP00000017913/1-1193 SPPPPPPRRS FPSSHGLTTT RTGEVVVTSK KDSAFIKKAE SEELEVQKPQ 1151 1200 ENSTTRP00000006067/1-1133 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- ---------- bmy_14038T0/1-1171 VKLRRAVSEV ARPASTPPIM ASAIKDEDDE DRIIAELEVF E--------- BACU006991/1-1369 VKLRRAVSEV ARPASTPPIM ASAIKDEDDE DRIIAELEAA AGPRPFCVPR ENSP00000264659/1-1183 VKLRRAVSEV ARPASTPPIM ASAIKDEDDE DRIIAELE-- ---------- ENSBTAP00000017913/1-1193 VKLRRTVSEV ARPASTPPIM ASAIKDEDDE DRIIAELE-- ---------- 1201 1250 ENSTTRP00000006067/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_14038T0/1-1171 ---------- ---------- ---------- ---------- ---------- BACU006991/1-1369 IILTECAPKP PSPPEARLED PGLRTTPTPR PRTLAGSGRG WGNPWAPPGL ENSP00000264659/1-1183 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017913/1-1193 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSTTRP00000006067/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_14038T0/1-1171 ---------- ---------- ---------- ---------- ---------- BACU006991/1-1369 MAEVSQPRNS SMLEKEGAAL KRLETGSCSP EKEGAGVPCS RGPAPDRTQE ENSP00000264659/1-1183 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017913/1-1193 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSTTRP00000006067/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_14038T0/1-1171 ---------- ---------- ---------- ---------- ---------- BACU006991/1-1369 PSAAETYPEE TLKDSGHDAQ PCSGESRGQH AAGLGRTGRG ASTQRMDSLE ENSP00000264659/1-1183 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017913/1-1193 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSTTRP00000006067/1-1133 ---------- ---------- ---------- ---SGGGSVP PMKVVTLGTS bmy_14038T0/1-1171 ---------- ---------- ---------- --RSSVSPLP PTPCRQPIPT BACU006991/1-1369 ETLRELEATL SQMGTAPAAG SPGSPPPPAP GPQSGGGSVP PMKVVTPGTS ENSP00000264659/1-1183 ---------- ---------- ---------- ---SGGGSVP PMKVVTPGAS ENSBTAP00000017913/1-1193 ---------- ---------- ---------- ---SGGGSVP PMKVVTPGAS 1401 1450 ENSTTRP00000006067/1-1133 RLKAAQGQAG SPDKGKHGKQ RAEYMRIQAQ QQ-------- ---------- bmy_14038T0/1-1171 LL--FPQDPG PPGGSAPGPT W--------- ---------- ---------- BACU006991/1-1369 RLKAAQGQAG SPDKGKHGKQ RAEYMRIQAQ QQSQRSGSGS QPDGSFLRRP ENSP00000264659/1-1183 RLKAAQGQAG SPDKSKHGKQ RAEYMRIQAQ QQATKPSKE- ---------- ENSBTAP00000017913/1-1193 RLKTAQGQAG SPDKGKHGKQ RAEYMRIQAQ QQVSLGASG- ---------- 1451 1500 ENSTTRP00000006067/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_14038T0/1-1171 ---------- ---------- ---------- ---------- ---------- BACU006991/1-1369 LTQDQRGLSP QPLLDKTLLR LVAPGVVNGE GEKGEKYFGP PVGAVVVVEA ENSP00000264659/1-1183 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017913/1-1193 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSTTRP00000006067/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_14038T0/1-1171 ---------- ---------- -KVTGCP--- -PPLTALSL- --------PV BACU006991/1-1369 LHPLSDLIIG PGTVYRVDSL TRGCFCPVAH LWPGRKMQMV LRPRCLERPL ENSP00000264659/1-1183 -------MSG S--------- -NETSSPVSE KPSASRTSI- --------PV ENSBTAP00000017913/1-1193 --------AG P--------- -RPHAAPTPT SPPAS----- ---------- 1551 1600 ENSTTRP00000006067/1-1133 ---------- ---------- ----- bmy_14038T0/1-1171 PPRFLSSLLT LTR------- ----- BACU006991/1-1369 VHSFGSVNIS EQFLYARSIL SAGWE ENSP00000264659/1-1183 LTSFGARNSS ISF------- ----- ENSBTAP00000017913/1-1193 ---------- ---------- -----