KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:02:52 2014 Check: 00 .. Name: ENSTTRP00000004024/1-1520 Len: 1713 Check: 1036 Weight: 1.00 Name: ENSBTAP00000017829/1-1520 Len: 1713 Check: 1761 Weight: 1.00 Name: bmy_13700T0/1-1539 Len: 1713 Check: 239 Weight: 1.00 Name: BACU008601/1-1569 Len: 1713 Check: 2227 Weight: 1.00 // 1 50 ENSTTRP00000004024/1-1520 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017829/1-1520 ---------- ---------- ---------- ---------- ---------- bmy_13700T0/1-1539 ---------- ---------- --------MG SAAWSCLS-- ---------- BACU008601/1-1569 MQCCDGNISK YSKSCKGLNT FLHESFSSME TPIITCKNGC KNCHRSQKPV 51 100 ENSTTRP00000004024/1-1520 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017829/1-1520 ---------- ---------- ---------- ---------- ---------- bmy_13700T0/1-1539 ---------- ---------- ---------- ---------- ---------- BACU008601/1-1569 RLTTYKLISG GCSDCRYKEK QLEAFFIMAC DPPQPKDGLR QPSPLPRALA 101 150 ENSTTRP00000004024/1-1520 ---------- ---------- -------MEP EPVEDCVQST LAALYPPFEA ENSBTAP00000017829/1-1520 ---------- ---------- -------QEP EPVEDCVQST LAALYPPFKA bmy_13700T0/1-1539 ---------- ---------- -------QEP EPVEDCVQST LAALYPPFEA BACU008601/1-1569 ALGDSLSPPH KKEGSGIQYR IVGLNGGLEP EPVEDCVQST LAALYPPFEA 151 200 ENSTTRP00000004024/1-1520 TAPTLLGQVF QVVERTYRED ALRYTLDFLV PAKHLLAKVQ QEACAQYSGF ENSBTAP00000017829/1-1520 TAPTLLGQVF QVVERTYRED ALRYTLDFLV PAKHLLAKIQ QEACAQYSGF bmy_13700T0/1-1539 TAPTLLGQVF QVVERTYRED ALRYTLDFLV PAKHLLAKVQ QEACAQYSGF BACU008601/1-1569 TAPTLLGQVF QVVERTYRED ALRYTLDFLV PAKHLLAKVQ QEACAQYSGF 201 250 ENSTTRP00000004024/1-1520 LFFHEGWPLC LHEQVVVQLA ALPWQLLRPG DFYLQVVPSA AQAPRLALKC ENSBTAP00000017829/1-1520 LFFHEGWPLC LHEQVVVQLA ALPWQLLRPG DFYLQVVPSA AQAPRLALKC bmy_13700T0/1-1539 LFFHEGWPLC LHEQVVVQLA ALPWQLLRPG DFYLQVVPSA AQAPRLALKC BACU008601/1-1569 LFFHEGWPLC LHEQVVVQLA ALPWQLLRPG DFYLQVVPSA AQAPRLALKC 251 300 ENSTTRP00000004024/1-1520 LAPGGGRVQE LPVPNEACAY LFTPEWLQGV NKDRPTGRLS TCLLSAPSGI ENSBTAP00000017829/1-1520 LAPGGGRVQE LPVPNEACAY LFTPEWLQGI NKDRPTGRLS TCLLSAPSGI bmy_13700T0/1-1539 LAPGGGRVQE LPVPNEACAY LFTPEWLQGV NKDRPTGRLS TCLLSAPCGI BACU008601/1-1569 LAPGGGRVQE LPVPNEACAY LFTPEWLQGV NKDRPTGRLS TCLLSAPSGI 301 350 ENSTTRP00000004024/1-1520 QRLPWAELIC PRFVHKGGLM VGHRPSTLPP EVPSGPPGLP SPPLPEEALG ENSBTAP00000017829/1-1520 QRLPWAELIC PRFVHKGGLM VGHRPSTLPP ELPSGPPGLP SPPLPEEALG bmy_13700T0/1-1539 QRLPWAELIC PRFVHKGGLM VGHRPSTLPP EVPSGPPGLP SPPLPEEALG BACU008601/1-1569 QRLPWAELIC PRFVHKGGLM VGHRPSTLPP EVPSGPPGLP SPPLPEEALG 351 400 ENSTTRP00000004024/1-1520 TRSPGDGHNA PAEGPEGEYV ELLEVTLPVR GSPTDADGSS GLSRTRTVPT ENSBTAP00000017829/1-1520 TRSPGDGHNA PAEGPEGEYV ELLEVTLPVR GSPMDAEGSS GLSRTRTVPT bmy_13700T0/1-1539 TRSPGDGHNA PAEGPEGEYV ELLEVTLPVR GSPTDAAGSS GLSRTRTVPT BACU008601/1-1569 TRSPGDGHNA PAEGPEGEYV ELLEVTLPVR GSPTDADSSS GLSRTRTVPT 401 450 ENSTTRP00000004024/1-1520 RKGAGGKGRH RRHRAWMHQK GLGPRDQDGA RPPGEGSSTG ASPACPPGAE ENSBTAP00000017829/1-1520 RKGAGGKGRH RRHRAWMHQK GLGPRDQDGA RPPGEGSSTG ASPGSPPGAE bmy_13700T0/1-1539 RKGAGGKGRH RRHRAWMHQK GLGPRDQDGA RPPGEGSSAG ASPGSPPGAE BACU008601/1-1569 RKGAGGKGRH RRHRAWMHQK GLGPRDQDGA RPPGEGSSAG ASPGSPPGAE 451 500 ENSTTRP00000004024/1-1520 AEALPEAAAL EVSEPPAEAL GEASEFCPLR PGEVGGGAGQ GAEGPPGTPR ENSBTAP00000017829/1-1520 VEAFPEAAAL EVSEPLAEAL GEASESCPLR PGEVGAGPGQ GAEGLPGTPR bmy_13700T0/1-1539 AEALPEAAAL EVSEPPAEAL GEAXEFCPLR PGEVGGGAGQ GPEGPPGTPR BACU008601/1-1569 AEALPEAAAL EVSEAPAEVL GEASEFCPLR PGEVGGGAGQ GAEGPPGTPR 501 550 ENSTTRP00000004024/1-1520 RAGKGNRRKK RAAGRGALNR GGDSAPLSPG DKEETSHQEA LVSPPPPSEH ENSBTAP00000017829/1-1520 RTGKGNRRKK RAAGRGALNR GGDSAPLSPG DKEETSHQEA LVSLPPPNEH bmy_13700T0/1-1539 RAGKGNRRKK RAAGRGALNR GGDSAPLSPG DKEETSHQEA LVSLPPPSEH BACU008601/1-1569 RAGKGNRRKK RAAGRGALNR GGDSAPLSPG DKEETSHQEA LVSLHLPSEH 551 600 ENSTTRP00000004024/1-1520 ELPGCGPVKE EHEGSGKPDP EPREELKPAD EGEPRPPEAC GPVEERARER ENSBTAP00000017829/1-1520 ELPGCSPVKE EHEGSGKPEP EPREELKPPD EKEPRSQEVC GPVEERARER bmy_13700T0/1-1539 ELPGCGPVKE EHEGSGKPDP EPREELKPAD EKEPRPPEAC GPVEERARER BACU008601/1-1569 ELPGCGPVKE EHEGSGKPDP EPREELKPAD EKEPRPPEAC GPVEERARER 601 650 ENSTTRP00000004024/1-1520 EPEGPRLVRV AGPSNPEGLL SDPLAPSPET VQEVKGDSIP EEATPVSSSD ENSBTAP00000017829/1-1520 EQEGLSLVCM AAPNDPEGLL SDPLKPPPET VQEVKGESIP EEGPPVSISD bmy_13700T0/1-1539 EQEGPRLVRV AGPSNPEGLL SDPLAPSPET VQEVKGDSIP EEATPVSSSD BACU008601/1-1569 EQEGPRLVCV AGPSNPEGLL SDPLAPSPET VQEVKGDSIP EEATPVSSSD 651 700 ENSTTRP00000004024/1-1520 DPGVAWDLMS SGCLVLTGGV DQSGRALLTI TPPSPPEEPP LSEDVLSTAL ENSBTAP00000017829/1-1520 DPGVAWDLLA SGFLILTGGV DQSGRALLTI TPPCPPEEPP PSQDVLSTAL bmy_13700T0/1-1539 DPGVAWDLMS SGCLVLTGGV DQSGRALLTI TPPCPPEEPP PSQDVLSTAL BACU008601/1-1569 DPGVAWDLMS SGCLVLT--- ---------- ---------- ---------- 701 750 ENSTTRP00000004024/1-1520 HYLHSLLRPD LQVLGLSVLL DLRKAPALPP ALIPVLSQLQ DSGDPPVIQR ENSBTAP00000017829/1-1520 HYLHSLLRPD LQILGLSVLL DLRKAPPLPP ALIPVLSQLQ DSGDPPLIQR bmy_13700T0/1-1539 HYLHSLLRPD LQVLGLSVLL DLRKAPALPP ALIPVLSQLQ DSGDPPLIQR BACU008601/1-1569 ---------- -------VLL DLRKAPALPP ALIPVLSQLQ DSGDPPLIQR 751 800 ENSTTRP00000004024/1-1520 LLLLTHDDPP TELHGFQGAE LLSESDLKRV AKPEELQWDL GGHRDPSPSH ENSBTAP00000017829/1-1520 LLLLTLDEPP AELHGLQGAE LLSEGDLKRV AKPEELQWDL GGHREPSPSH bmy_13700T0/1-1539 LLLLTHDDPP TELHGFQGAE LLSESDLKRV AKPEELQWDL GGHRDPSPSH BACU008601/1-1569 LLLLTHDDPP TELHGFQGAE LLSESDLKRV AKPEELQWDL GGHRDPSPSH 801 850 ENSTTRP00000004024/1-1520 WVETHKEVER LCRLCRGVLG SVRRAIEELE RAADPEGE-- ---------- ENSBTAP00000017829/1-1520 WVETHQQVAR LCHLCRGVLG SIRQAIEELE RAAEPEGE-- ---------- bmy_13700T0/1-1539 WVETHKEVER LCRLCRGVLG SVRRAIEELE RAAEPEGEVG NEMGQKGMRW BACU008601/1-1569 WVETHKEVER LCRLCRGVLG SVRRAIEELE RAAEPEGEVG NEMGQKGM-- 851 900 ENSTTRP00000004024/1-1520 ---------- ---------- ---EAAGMPE PLQKVLADPR LTELQRDGGA ENSBTAP00000017829/1-1520 ---------- ---------- ---EVVGMPE PLQKVLADPR LTELQRDGGA bmy_13700T0/1-1539 GWGWAELRTS WWNPNCQLLP TPQEAAGMPE PLQKVLADPR LTELQRDGGA BACU008601/1-1569 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000004024/1-1520 ILMRLRSTHS SKLEGPGPAT LYQEVDEAIH QLVRLSNLHV QQQEQRQRLH ENSBTAP00000017829/1-1520 ILMKLRSTHS SKLEGPGPAA LYQEVDEAIH QLVRLSNLHV QQQEQRQRLH bmy_13700T0/1-1539 ILMRLRSTHS SKLEGPGPAT LYQEVDEAIH QLVRLSNLHV QQQEERQRLH BACU008601/1-1569 ---------- -RLEGPGPAT LYQEVDEAIH QLVRLSNLHV QQQEQRQRLH 951 1000 ENSTTRP00000004024/1-1520 RLQQVLRWLS GPGEEQLVSF AVPGDSLSAL QETELRFRAF SAEVQERLAQ ENSBTAP00000017829/1-1520 RLQQALQWLS GPGEEQLASF AVPGDSLPAL QETELRFRAF SAEVQERLAQ bmy_13700T0/1-1539 RLQQVLQWLS GPGEEQLVSF AVPRDSLSAL QETELRFRAF SAEV------ BACU008601/1-1569 RLQQVLQWLS GPGEEQLVSF AVPGDSLSAL QETELRFRAF SAEVQERLAQ 1001 1050 ENSTTRP00000004024/1-1520 AREALALEED PASQKLLDIF EQRLEQVESG LHRALRLQRF FQQXXXXXXX ENSBTAP00000017829/1-1520 ARETLALEED AASQKLLDVF EQRLEQVESG LHRALRLQRF FQQAHEWVDE bmy_13700T0/1-1539 ---------- ---------- ---------- ---------- --QAHEWVDE BACU008601/1-1569 AREALALEED PASQKVLDIF EQRLEQVESG LHRALRLQRF FQQAHEWVDE 1051 1100 ENSTTRP00000004024/1-1520 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017829/1-1520 GSARLAGAGP GREAVLAALA LRRAPEPSAG TFQEMRALAL DLGSPAALRE bmy_13700T0/1-1539 GSTRLAGAGP GREAVLAALA LRRTPEPSAG TFQEMRALAL DLGSPAALRE BACU008601/1-1569 GSTRLAGAGP GREAVLAALA LRRTPEPSPG TFQEMRALAL DLGSPAALRE 1101 1150 ENSTTRP00000004024/1-1520 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000017829/1-1520 WGRCRARCQE LERRIQQQLG EEASPRGHRR RRADSASSGG APRGPHSPSP bmy_13700T0/1-1539 WGRCRARCQE LEKRVQQQLG AEASPRGHRR RRADSASSGG AQRGSHSPSP BACU008601/1-1569 WGRCRARCQE LEKRVQQQLG AEASPRGHRR RRADSASSGG AQRGSHSPSP 1151 1200 ENSTTRP00000004024/1-1520 XXXXXXXXXX XXXXXXXXXX XXXXXGEDYE DEGPELAPEA EGRPPRTVLI ENSBTAP00000017829/1-1520 SLSSLLLPSS PGPRAAPSHC SLAPCGEDYE EEGAELGPEA EGRPPRTVLI bmy_13700T0/1-1539 SLRSLLLPSS PGPRAAPSHC SLAPCGEDCE EEGPELAPEA EGRPPRTVLI BACU008601/1-1569 SLRSLLLPSS PGPRAAPSHC SLAPCGEDCE EEGPELAPEA EGRPPRTVLI 1201 1250 ENSTTRP00000004024/1-1520 RGLEVTSTEV VDRTCSPREH VLLGRAGGPE GPWGVGTPRM ERKRSISAQQ ENSBTAP00000017829/1-1520 RGLEVTSTEV VDRTCSPREH VLLGRAGGPE GPWGVGTPRM ERKRSISAQQ bmy_13700T0/1-1539 RGLEVTSTEV VDRTCSPREH VLLGRAGGPE GPWGVGTPRM ERKRSISAQQ BACU008601/1-1569 RGLEVTSTEV VDRTCSPREH VLLGRAGGPE GPWGVGTPRM ERKRSISAQQ 1251 1300 ENSTTRP00000004024/1-1520 RLVSELIACE QEYVATLSEP VPPAGPELTP ELRGTWEAAL SARERLRSFH ENSBTAP00000017829/1-1520 RLVSELITCE QEYVAALSEP VPPPGPELTP ELRGTWAAAL SARERLRSFH bmy_13700T0/1-1539 RLVSELIACE QEYVATLSEP VPPAGPELTP ELRGTWAAAL SARERLRSFH BACU008601/1-1569 RLVSELIACE QEYVATLSEP VPPAGPELTP ELRGTWAAAL SARERLRSFH 1301 1350 ENSTTRP00000004024/1-1520 RTHFLRELQG CATHPLRIGA CFLRHGDQFS LYAHYVKHRH KLENGLAALS ENSBTAP00000017829/1-1520 RTHFLRELQG CATHPLRIGA CFLRHGDQFS LYAQYVKHRH KLETGLTALS bmy_13700T0/1-1539 RTHFLRELQG CATHPLRIGA CFLRHGDQFS LYAQYVKHRH KLENGLAALS BACU008601/1-1569 RTHFLRELQG CATHPLRIGA CFLRHGDQFS LYAQYVKHQH KLENGLAALS 1351 1400 ENSTTRP00000004024/1-1520 PPTKGTMEGG PHLPRALQQP LEQLARYGRL LEELLREAGP EPSSERQALG ENSBTAP00000017829/1-1520 PPTKGTLEGG PHLPRALQQP LEQLARYGRL LEELLREAGP EPSSERQALG bmy_13700T0/1-1539 PPTKGTMEGG PHLPRALQQP LEQLARYGRL LEELLREAGP EPSSERQALG BACU008601/1-1569 PPTKGTMEGG PHLPRALQQP LEQLARYGRL LEELLREAGP EPSSERQALG 1401 1450 ENSTTRP00000004024/1-1520 AAMQLLREQE TRGKDLLAVE AVRGCEIDLK EQGQLLHRDP FTVICGRKKC ENSBTAP00000017829/1-1520 AAVQLLREQE IRGRDLLAVE AVRGCEIDLK EQGQLLHRDP FTVICGRKKC bmy_13700T0/1-1539 AAMQLLREQE TRGKDLLAVE A-----IDLK EQGQLLHRDP FTVICGRKKC BACU008601/1-1569 AAMQLLREQE TRGKDLLAVE AVRGCEIDLK EQGQLLHRDP FTVICGRKKC 1451 1500 ENSTTRP00000004024/1-1520 LRHVFLFEHL LLFSKLKGPE GGSETFVYKQ AFKTADMGLT ENIGDSGLCF ENSBTAP00000017829/1-1520 FRHVFLFEHL LLFSKLKGPE GGSETFVYKQ AFKTADMGLT ENIGDSGLCF bmy_13700T0/1-1539 LRHVFLFEHL LLFSKLKGPE GGSETFVYKQ AFKTADMGLT ENIGDSGLCF BACU008601/1-1569 LRHVFLFEHL LLFSKLKGPE GGSETFVYKQ AFKTADMGLT ENIGDSGLCF 1501 1550 ENSTTRP00000004024/1-1520 ELWFRRRRAR EAYTLQAASP EIKLKWTSSI AQLLWRQAAH NKELRVQQMV ENSBTAP00000017829/1-1520 ELWFRRRRAR EAYTLQAASP EIKLKWTSSI AQLLWRQAAH NKELRVQQMV bmy_13700T0/1-1539 ELWFRRRRAR EAYTLQAASP EIKLKWTSSI AQLLWRQAAH NKELRVQQMV BACU008601/1-1569 ELWFRRRRAR EAYTLQAASP EIKLKWTSSI AQLLWRQAAH NKELRVQQMV 1551 1600 ENSTTRP00000004024/1-1520 SMGIGNKPFL DIKALGERTL SALLTGRAAR TRASVAVSSF EHAGPSLPGL ENSBTAP00000017829/1-1520 SMGIGNKPFL DIKALGERTL SALLTGRAAR TRASVAVSSF EHAGPSLPGL bmy_13700T0/1-1539 SMGIGNKPFL DIKALGERTL SALLTGRAAR TRASVAVSSF EHAGPSLPGL BACU008601/1-1569 SMGIGNKPFL DIKALGERTL SALLTGRAAR TRASVAVSSF EHAGPSLPGL 1601 1650 ENSTTRP00000004024/1-1520 SPGACSLPAR VEEEAWDLDV KQISLAPETF ASSGDVSPGP RNS------- ENSBTAP00000017829/1-1520 SPGACSLPAR VEEEAWDLDV KQIALAPETL DSSGDVSPGP RNS------- bmy_13700T0/1-1539 SPGACSLPAR VEEEAWDLDV KQISLGEAPL KG---FPSSP RNTCLFWRCV BACU008601/1-1569 SPGACSLPAR VEEEAWDLDV KQISLAPETL ASSGDVSPGP RNS------- 1651 1700 ENSTTRP00000004024/1-1520 PSLQR-PHPG SSTPILASGG ILGLSRQSHA ------RALS D--PTTPL-- ENSBTAP00000017829/1-1520 PNLQA-PHPG SSTPILSSGG ILGLSRQSHT ------RALS D--PTTPL-- bmy_13700T0/1-1539 PRTKKQPQPA TPTP-WEQHS HLGQWRDLRA IPTEKIRNLA TAPPLSTLWA BACU008601/1-1569 PSLQR-PHPG SSTPILASGG ILGLSRQSHA ------RALS D--PTTPL-- 1701 1750 ENSTTRP00000004024/1-1520 ---------- --- ENSBTAP00000017829/1-1520 ---------- --- bmy_13700T0/1-1539 GMLGGHSGGL EEH BACU008601/1-1569 ---------- ---