KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:02:51 2014 Check: 00 .. Name: ENSP00000273179/1-276 Len: 300 Check: 353 Weight: 1.00 Name: ENSTTRP00000005114/1-235 Len: 300 Check: 8994 Weight: 1.00 Name: bmy_14191T0/1-272 Len: 300 Check: 7852 Weight: 1.00 Name: ENSBTAP00000017828/1-277 Len: 300 Check: 1331 Weight: 1.00 // 1 50 ENSP00000273179/1-276 --MDGPAIIT QVTNPKEDEG RLPGAGEKAS QCNVSLKKQR SRSILSSFFC ENSTTRP00000005114/1-235 --MDGPAIIT QVTNPKEDEG RAPGAGEKAS QCNVSLKKQR SRSILSSFFC bmy_14191T0/1-272 ---------- ---------- --------AS QCNVSLKKQR SRSILSSFFC ENSBTAP00000017828/1-277 MTEVPELVPL NCRNPNSGSG IAPRYG-PAS QCNVSLKKQR SRSILSSFFC 51 100 ENSP00000273179/1-276 CFRDYNVEAP PPSSPSVLPP LVEENGGLQK GDQRQVIPIP SPPAKYLLPE ENSTTRP00000005114/1-235 CFRDYNVDAP PGSSPGVLPP LVEENGGLQK GDQRQIIPIP SPPAKYLLPE bmy_14191T0/1-272 CFRDYNVEAP PGSSPGVLPP LVEENGGLQK GDQRQIIPIP SPPAKYLLPE ENSBTAP00000017828/1-277 CFRDYNVDAP PGSSPGVLPP LVEENGGLQK GDQRQIIPIP SPPAKYLLPE 101 150 ENSP00000273179/1-276 VTVLDYGKKC VVIDLDETLV HSSFKPISNA DFIVPVEIDG TIHQVYVLKR ENSTTRP00000005114/1-235 VTVLDYGKKC VVIDLDETLV HSSFKPISNA DFIVPVEIDG TIHQVYVLKR bmy_14191T0/1-272 VTVLDYGKKC VVIDLDETLV HSSFKPISNA DFIVPVEIDG TIHQVYVLKR ENSBTAP00000017828/1-277 VTVLDYGKKC VVIDLDETLV HSSFKPISNA DFIVPVEIDG TIHQVYVLKR 151 200 ENSP00000273179/1-276 PHVDEFLQRM GQLFECVLFT ASLAKYADPV ADLLDRWGVF RARLFRESCV ENSTTRP00000005114/1-235 PHVDEFLQRM GQLFECVLFT ASLAKYADPV ADLLDRWGVF RARLFRESCV bmy_14191T0/1-272 PHVDEFLQRM GQLFECVLFT ASLAKYADPV ADLLDRWGVF RARLFRESCV ENSBTAP00000017828/1-277 PHVDEFLQRM GQLFECVLFT ASLAKYADPV ADLLDRWGVF RARLFRESCV 201 250 ENSP00000273179/1-276 FHRGNYVKDL SRLGRELSKV IIVDNSPASY IFHPENA--- ---------- ENSTTRP00000005114/1-235 FHRGNYVKDL SRLGRELSKV IIVDNSPASY IFHPENA--- ---------- bmy_14191T0/1-272 FHRGNYVKDL SRLGRELSKV IIVDNSPASY IFHPENALRQ ENEQDDDDDD ENSBTAP00000017828/1-277 FHRGNYVKDL SRLGRELSKV IIVDNSPASY IFHPENA--- ---------- 251 300 ENSP00000273179/1-276 ---------V PVQSWFDDMT DTELLDLIPF FEGLSREDDV YSMLHRLCNR ENSTTRP00000005114/1-235 ---------- ---------- ---------- ---------- ---------- bmy_14191T0/1-272 DDDDDDDFQV PVQSWFDDMT DTELLDLIPF FEGLSQEDDV YSMLHRLCSR ENSBTAP00000017828/1-277 ---------V PVQSWFDDMT DTELLDLIPF FEGLSQEDDV YSMLHRLCSR