KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:02:17 2014 Check: 00 .. Name: bmy_14213T0/1-499 Len: 713 Check: 5142 Weight: 1.00 Name: ENSP00000385006/1-577 Len: 713 Check: 6328 Weight: 1.00 Name: ENSTTRP00000016379/1-512 Len: 713 Check: 1431 Weight: 1.00 Name: BACU011049/1-262 Len: 713 Check: 8774 Weight: 1.00 Name: ENSBTAP00000017628/1-559 Len: 713 Check: 552 Weight: 1.00 // 1 50 bmy_14213T0/1-499 MPTRRPPGAH AAASAAPPPP RGHPAPHGFG LASPVSRNGV FWKRASFGRL ENSP00000385006/1-577 -----MVICC AAVNCSNRQG KGEKRAVSFH ---------- ---------- ENSTTRP00000016379/1-512 ---------- ---------- ---------- ---------- ---------- BACU011049/1-262 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017628/1-559 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_14213T0/1-499 SFPLKDSKRL IQWLKAVQRD NWTPTKYSFL CSEHFTKDSF SKRLEDQHRL ENSP00000385006/1-577 RFPLKDSKRL IQWLKAVQRD NWTPTKYSFL CSEHFTKDSF SKRLEDQHRL ENSTTRP00000016379/1-512 -FPLKDSKRL IQWLKAVQRD NWTPTKYSFL CSEHFTKDSF SKRLEDQHRL BACU011049/1-262 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017628/1-559 RFPLKDSKRL MQWLKAVQRD NWTPTKYSFL CSEHFTKDSF SKRLEDQHRL 101 150 bmy_14213T0/1-499 LKPTAVPSIF HLAEKKRGAG GHGRPRRKDA RKASGGLRAH ASDIADGKAA ENSP00000385006/1-577 LKPTAVPSIF HLTEKKRGAG GHGRTRRKDA SKATGGVRGH SSAATSRGAA ENSTTRP00000016379/1-512 LKPTAVPSIF HLAEKKRGAG GHGRPRRKDT RKASGGLRAH ASDIADGKAA BACU011049/1-262 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017628/1-559 LKPTAVPSIF HLAEKKRRAG GHGRPRRRDT GKASAGLRAQ ASDPVDGKAA 151 200 bmy_14213T0/1-499 AGSSSSSSSE SLMAKPESRK LKRGASQGRT AARATREAAG LQRARQPPEG ENSP00000385006/1-577 GWSPS--SSG NPMAKPESRR LKQAALQGEA TPRAAQEAAS QEQAQQALER ENSTTRP00000016379/1-512 AGSSSSCSSE SLMAKPESRK LKRGASQGRP AARATREAAG LQRARQPPET BACU011049/1-262 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017628/1-559 AGSPSS-SSA SPMAKPEPRK LKRATPQGRT AARAARETAG QERGRQPLEG 201 250 bmy_14213T0/1-499 HADDGPASAT ASGSRGEANA CAVDAGDENA TSP-DGGLVD RSGISVDDFT ENSP00000385006/1-577 TPGDGLATMV A-GSQGKAEA SATDAGDESA TSSIEGGVTD KSGISMDDFT ENSTTRP00000016379/1-512 RR-DGPASAT ASGGQGEANT CAVDAGDENA TSP-DGGLVD RSGISVDDFT BACU011049/1-262 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017628/1-559 RAEDGPASAA TSCSQGEAGT GAEDAGEEGA TPA-DSGLVD RSGVSADDFT 251 300 bmy_14213T0/1-499 PPGSGACKFI GSLHSYSFSS KHARERPAVP REPVDRKRPK RDAEPGCSGS ENSP00000385006/1-577 PPGSGACKFI GSLHSYSFSS KHTRERPSVP REPIDRKRLK KDVEPSCSGS ENSTTRP00000016379/1-512 PPGSGACKFI GSLHSYSFSS KHARERPAVP REPVDRKRPK RDAEPGCSGS BACU011049/1-262 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017628/1-559 PPGSGACKFI GSLHSYSFSS KHARERPAVP REPVERKRLR RDAEPGCSGS 301 350 bmy_14213T0/1-499 SPGPDKGPAQ SPPRAPPTAS SSLTATPQKP AQGPSAPPTD VTPKPAAEAV ENSP00000385006/1-577 SLGPDKGLAQ SPP------S SSLTATPQKP SQSPSAPPAD VTPKPATEAV ENSTTRP00000016379/1-512 SPGPDKGPAQ SPP------S SSLTATPQKP AQGPSAPPTD VTPKPAAEAV BACU011049/1-262 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017628/1-559 SPGPEKGPAQ SPPRACPSAS SSLTATPQKP AQGASAPPTD VTPKPAAEAV 351 400 bmy_14213T0/1-499 QSAHSDASPM SINEVILSAS GACKLIDSLH SYCFSSRQSK SQVCCLQEQV ENSP00000385006/1-577 QSEHSDASPM SINEVILSAS GACKLIDSLH SYCFSSRQNK SQVCCLREQV ENSTTRP00000016379/1-512 QSEHSDASPM SINEVILSAS GACKLIDSMH S-CFSSRQSK IQVCCLQEQV BACU011049/1-262 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017628/1-559 QSEHSDASPM SINEVILSAS GACKLIDSLH SYCFSSRQSK SQVCCLREQV 401 450 bmy_14213T0/1-499 EKKNGELRAL RQRVSRADSQ VRELREKLDR LRRLSLPHLS SLLAP----- ENSP00000385006/1-577 EKKNGELKSL RQRVSRSDSQ VRKLQEKLDE LRRVSVPYPS SLLSPSREPP ENSTTRP00000016379/1-512 EKKNGELRAL RQRVSRSDNQ VRELREKLVR LRRLSLPHLS TLLAPGREAP BACU011049/1-262 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017628/1-559 EKKNGELRTL RQRVSRSDSQ VRELRQKLDQ LRRLSLPHLS SLLPPGREPP 451 500 bmy_14213T0/1-499 ---------- ---------- -GRGQYPGLA PAR------- -------LGF ENSP00000385006/1-577 KMNPVVEPLS WMLGTWLSDP PGAGTYPTLQ PFQYLEEVHI SHVGQPMLNF ENSTTRP00000016379/1-512 RMNPVLEPLS WMLGTWLSDP PGAGTFPTLQ PFQYLEEVHI SHVGQPMLNF BACU011049/1-262 -MNPVVEPLS WMLGTWLSDP PGAGTFPTLQ PFHYLEEVHI SHVGQPMLNF ENSBTAP00000017628/1-559 KMSPVVEPLS WMLGTWLSEP PGAGTFPTLQ PFRYLEEAHI SHVGQPMLNF 501 550 bmy_14213T0/1-499 ASAGPAP--- ------CGAS R--------- --EGSQAGEL ASPAGLQGAR ENSP00000385006/1-577 SFNSFHPDTR KPMHRECGFI RLKPDTNKVA FVSAQNTGVV EVEEGEVNGQ ENSTTRP00000016379/1-512 SFNAFHPDTH KPMHRECGFI RLEPDTNKVA FVSAQNTGIV EVEEGEVNGQ BACU011049/1-262 SFNAFHPDTH KPMHRECGFI RLEPDTNKVA FVSAQNTGIV EVEEGEVNGQ ENSBTAP00000017628/1-559 SFNAFHPDTH KPMHRECGFI RLEPDTNKVA FVSAQNTGIV EVEEGEVNGQ 551 600 bmy_14213T0/1-499 EVAVAG---- --SFSR---- ---------- ---------- ---------- ENSP00000385006/1-577 ELCIASHSIA RISFAKEPHV E--------- ---------- ---------- ENSTTRP00000016379/1-512 ELCIASHSIA RTSFAKEPHV EQ-------- ---------- ---------- BACU011049/1-262 ELCIASHSIA RISFAKEPHV EQPSHSLSLG PAEVVGDQRL RRGVSPVTVS ENSBTAP00000017628/1-559 ELCIASHSIA RISFAKEPHV E--------- ---------- ---------- 601 650 bmy_14213T0/1-499 ---------- ---------- ---------- ---------- ---------- ENSP00000385006/1-577 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016379/1-512 ---------- ---------- ---------- ---------- ---------- BACU011049/1-262 RLLLPCVLPP GGCYRMFTDF GTKKQSRRPR ERRPSVQRAV KWAASSRRGQ ENSBTAP00000017628/1-559 ---------- ---------- ---------- ---------- ---------- 651 700 bmy_14213T0/1-499 ---------- ---------- ---------- ---------- ---------- ENSP00000385006/1-577 ---------- ---------- ---QITRKFR LNSEGKLEQT VSMATTTQPM ENSTTRP00000016379/1-512 ---------- ---------- ---------- ---------- ---------- BACU011049/1-262 QPARRRGGGT GVQGRTGSQV VRPQITRKFR LNSEGKLEQT VSMATTTQPL ENSBTAP00000017628/1-559 ---------- ---------- ---QITRKFR LNSEGKLEQT VSMATTTQPL 701 750 bmy_14213T0/1-499 ---------- --- ENSP00000385006/1-577 TQHLHVTYKK VTP ENSTTRP00000016379/1-512 ---------- --- BACU011049/1-262 TQHLHVTYKK VTP ENSBTAP00000017628/1-559 TQHLHVTYKK VTP