KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:01:26 2014 Check: 00 .. Name: ENSBTAP00000017417/1-1193 Len: 1196 Check: 2204 Weight: 1.00 Name: ENSTTRP00000003831/1-1193 Len: 1196 Check: 2339 Weight: 1.00 Name: bmy_00112T0/1-1140 Len: 1196 Check: 3504 Weight: 1.00 Name: BACU018839/1-1191 Len: 1196 Check: 6997 Weight: 1.00 // 1 50 ENSBTAP00000017417/1-1193 MWRMKKLNLS LSPSPQPGKA AMRTPLRELA LQPDAPTNSG KGPP--HSPT ENSTTRP00000003831/1-1193 ---RVKLNLS VSPSPQPGKA AMRTPLRELI LKPGALTNSG TGPPIAYSST bmy_00112T0/1-1140 ---------- ---------- -MRTPLRELI LQPGALTNSG TGPPIAYSST BACU018839/1-1191 MWRVKKLNLS VSPSPQPGKA AMRTPLRELI LQPGALTNSG TGPPIAYSST 51 100 ENSBTAP00000017417/1-1193 PSPCKLGLQL NINKYSPPDF VNARKTDSPS EQFGHPSKWL EAYQHESDEQ ENSTTRP00000003831/1-1193 SSLCKLGLQE GSNNSSPLDL VNAKKTDSPS EQFSHPSTCL EACQHESDEQ bmy_00112T0/1-1140 PSLCKLGLQE GSNNSSPLDF VNAKKTDAPS EQFSHPSTCL EACQHESDEQ BACU018839/1-1191 PSLCKLGLQE GSNNSSPLDF VNAKKTDAPS EQFSHPSTCL EACQHESDEQ 101 150 ENSBTAP00000017417/1-1193 PLNLIPQTNS TPKTCEKGVD PRDNNVVKTM VLVPSPGRQQ QDITLADRLD ENSTTRP00000003831/1-1193 PLNLIPQTNS TPRTSEEAVD PLGNNVVKTM VLVPSPGGQQ QNITVEAHLD bmy_00112T0/1-1140 PLNLIPQTNS TPKTSEEAVD PLGDNVVKTM VLVPSPGGQQ QNITLEAHLD BACU018839/1-1191 PLNLIPQTNS TPKTSEEAVD PLGDNVVKTM VLVPSPGGQQ QNITLEVHLD 151 200 ENSBTAP00000017417/1-1193 SMAEGNSFSL DEPLRPGDLL RKGVDFCMED SFSETVPGMP EIPAFQDPPS ENSTTRP00000003831/1-1193 TMAETHSFSL DEPLRTGDLQ RKGVAPCMED NFSEIVPAMP EKPTFQNPPS bmy_00112T0/1-1140 TMAETNSFSL DEPLRPGDLL RKGVAPCMED NFSEIVPAMP EKPTFQDPPS BACU018839/1-1191 TMAETNSFSL DEPLRPGDLL RKGVAPCMED NFSEIVPAMP QKPTFQDPPS 201 250 ENSBTAP00000017417/1-1193 QLLESPPNPC SEQQLHCSKE SLKDRSTEAE PEDLVPSESN ALLPSSLLWL ENSTTRP00000003831/1-1193 HLLEYPQNSC SEQQLHCSRE SLKDSRTEAV PKDLVPSESN ALLPSSPLWL bmy_00112T0/1-1140 HLLEYPQNPC SEQQLHCSKE SLKDSRTEAV PEDLVPSESN ALLPSSLLWL BACU018839/1-1191 HLLEYPQNPC SEQQLHCSKE SLKDSRTEAV PEDLVPSESN VLLPSSLLWL 251 300 ENSBTAP00000017417/1-1193 SPSTALAADC PVSHVDPEGD ILEHRAIEER KMSFPTLPEE AELGHQALVS ENSTTRP00000003831/1-1193 SPSTVLAADF PVSLVDPGEE ILEHRSTEER EMRFPTFPEE AELGDQALVS bmy_00112T0/1-1140 SPSPVLAADF PVSLVDPGEE ILEHRTIEER EMSFPTFPEE AELGDQALVS BACU018839/1-1191 SPSTVLAADF PVSLVDPGEE ILEHRTIEER EMSFPTFPEE AELGDQALVS 301 350 ENSBTAP00000017417/1-1193 NTDDIPSTCP SPNPGEMESQ VVPGPAGKDA SGIPGSDVGP WMSPLAWLEK ENSTTRP00000003831/1-1193 NMDDIPSTDL TPNPGEMESQ AAPGPAVEDA GSIPVSDMGP WMSPLAWLEK bmy_00112T0/1-1140 NMDDIPSTGL TPNPGEMESQ AAPGPAVEDA GSIPVSDMGP WMSPLAWLEK BACU018839/1-1191 NMDDIPSTGL TPNPGEMESQ AAPGPAVEHA GSIPVSDMGP WMSPLAWLEK 351 400 ENSBTAP00000017417/1-1193 GVNTSVMLEN LRQSLSLPSA FQNAAIGTTP FSACSVGTWF TPPAQQERST ENSTTRP00000003831/1-1193 GVNTSVMLEN LRQSLSLPSV FRDAAIGTTP FSTCSVGTWF TPPAQQERST bmy_00112T0/1-1140 GVNTSVMLEN LRQSLSLPSV FRDAAIGTTP FSTCSVGTWF TPPAQQERST BACU018839/1-1191 GVNTSVMLEN LRQSLSLPSV FRDAAIGTTP FSTCSVGTWF TPPAQQERST 401 450 ENSBTAP00000017417/1-1193 NTSQTGLVGT KDSASETEHL LWGRSPDLTA LSRHDLEDNL LNSLVILEVL ENSTTRP00000003831/1-1193 NTSQIGLVGT KDSTSETEHL LWGRPPDLTA LSRHDLEDNL LNSLVILEVL bmy_00112T0/1-1140 NTSQTGLVGT KDSTSETEHL LWGRPPDLTA LSRHDLEDNL LNSLVILEVL BACU018839/1-1191 NTSQTGLVGT KDSTSETEHL LWGRPPDLTA LSRHDLEDNL LNSFVILEVL 451 500 ENSBTAP00000017417/1-1193 SRQLRDWKSQ QSGPHPEVRD SSTQTDTLPN EMSKKPQHLQ ESQEVGQALQ ENSTTRP00000003831/1-1193 SRQLQDWKSQ LTGPHPEVQD SSTQTDTFSN GMSKKPQHLQ ESQEIGQALR bmy_00112T0/1-1140 SRQLQDWKSQ LTGPHPE--- ---------- -MSKKPQHLQ ESQEIGQALR BACU018839/1-1191 SRQLQDWKSQ LTGPHPEVQD SSTQTDTSSS GMSKKPQHLQ ESQEIGQALR 501 550 ENSBTAP00000017417/1-1193 QARNVMQSWV LLSRELISLL HLSLLHLDED KTALSQETRR AETLVSCCFD ENSTTRP00000003831/1-1193 QARNVMQSWA LVSKELISLQ QLSLLHLDED KTALSQESWR TETLVSRCFD bmy_00112T0/1-1140 QARNVMQSWV LVSKELISLL HLSLLHLDED KTALSQESRR TETLVSCCFD BACU018839/1-1191 QARNVMQSWV LVSKELISLL HLSLLHLDED KTALSQESRR TETLVSCCFD 551 600 ENSBTAP00000017417/1-1193 VLKKLKARLQ SLKAEREEAK HREELALRGK DVAETVLEVF CAHASQRISQ ENSTTRP00000003831/1-1193 VLKKLRARLQ SLKAEREEAK HREEMALRGK DAAETVLEVF CAHASQRISQ bmy_00112T0/1-1140 VLKKLRARLQ SLKAEREEAK HREEMALRGK DAAETVLEVF CAHASQRISQ BACU018839/1-1191 VLKKLRARLQ SLKAEREEAK HREEMALRGK DAAETVLEVF CAHTSQRISQ 601 650 ENSBTAP00000017417/1-1193 LQQDLASMGK FRGLLKETQT QLVGLHTEQE ELAQQTASLT SALQQDWIAM ENSTTRP00000003831/1-1193 LEQDLASMGE FRGLLKETQT QLVGLHTEQE GLAQQTASLT SALQQDWISM bmy_00112T0/1-1140 LEQDLASMGE FRGLLKETQT QLVGLHTEQE GLAQLTASLT SALQQDWISM BACU018839/1-1191 LEQDLASMGE FRGLLKETQT QLVGLHTEQE GLAQQTASLT SALQQDWISM 651 700 ENSBTAP00000017417/1-1193 QLDYVTWTAL LSRFRQLTEK FTAKSRQTLQ ERDAAIEEKQ Q-VSRELEQV ENSTTRP00000003831/1-1193 QLDYVTWTAL LSRFQQLTEK FTAKSRQTLQ ERDAAIEEKQ QXXXXXXXXX bmy_00112T0/1-1140 QLDCVTWTAL LSRFQQLTEK FTAKSRQTLQ ERDAAIEEKQ Q-VSRELERV BACU018839/1-1191 QLDCVTWTAL LSRFRQLTEK FTAKSRQTLQ ERDAAIEEKQ Q-VQ---TRV 701 750 ENSBTAP00000017417/1-1193 SSHLEDCKSQ LERLELENSR LAADLQAQLQ ILASTESQLK VLQSQHAHCT ENSTTRP00000003831/1-1193 XXXXKDCKSQ LEQLELENSR LATDLRAQLQ ILASMESQLK ELQSQHASCT bmy_00112T0/1-1140 SSHLEDCKSQ LEQLELENSR LATDLRAQLQ ILASMESQLK ELQSQHAHCT BACU018839/1-1191 SSHLEDCKSQ LEQLESENSR LATDLQAQLQ ILASMESQLK ELQSQHAHFT 751 800 ENSBTAP00000017417/1-1193 QDLAMKDELL CRLTQNSEEQ TAQWQKEEMA LKHVQAKLQQ QQAVLAKEVQ ENSTTRP00000003831/1-1193 QDLAMKDQLL CQLTQSSEEK AAQWQKEEMA LKHMQAELQQ QQAVLAKEVQ bmy_00112T0/1-1140 QDLAMKDQLL CQLTQSSEEK AAQWQKEEMA LKHMQAELQQ QQVVLAKEVQ BACU018839/1-1191 QDLAMKDQLL CQLTQSSEEK AAQWQKEEMA LKHIQAELQQ QQAVLAKEVQ 801 850 ENSBTAP00000017417/1-1193 DLKETLEFAE QENQVAHLEL GQVECQLKTT LEVLRERSMQ CEGLKDTVEN ENSTTRP00000003831/1-1193 DLKETLEFAE QENQVAHLEL GQVECQLKTT LEILRERSLQ CEDLKDTMEN bmy_00112T0/1-1140 DLKETLEFAE QENQVAHLEL GQVECQLKTT LEVLRXRSLQ CEDLKDTMEN BACU018839/1-1191 DLKETLEFAE QENQVAHLEL GQVECQLKTT LEILRERSLQ CEDLKDTMEN 851 900 ENSBTAP00000017417/1-1193 LKVKLASIVA ETRQQDLEKM RQYSQELGVL TEQLHSLTLF LQTKLKEKAE ENSTTRP00000003831/1-1193 LKAKLASTMA EKQQQDLEKT RQYSQELRVL TEQLRSLTLF LQTKLKEKXX bmy_00112T0/1-1140 LKAKLASTMA EKQQQDLEKT RQYSQELR-- ---------- --------AE BACU018839/1-1191 LKAQLASTMA EKQQQDLEKT RQYSQELRVL TEQLHSLTLF LQTKLKEKAE 901 950 ENSBTAP00000017417/1-1193 PETLPISTAS AFSQEHPPPS DSTFLGSPQT AEADEDPEST PVPLLGSDKS ENSTTRP00000003831/1-1193 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXT AVADEEPESA PVPLLGSDKS bmy_00112T0/1-1140 PETLPISTAC APSQEHPLPS DSTFLGSTLT AVADEEPESA PVPLLGSDKS BACU018839/1-1191 PETLPISTAC APSQEHPLPS DSTFLGSTLT AVADEEPESA -VPLLGSDKS 951 1000 ENSBTAP00000017417/1-1193 AFTRVASTVS LEPTETPGIE KSLAEMGTKT LELQSLCSLL QESKEEAVRI ENSTTRP00000003831/1-1193 AFTRVASTVS HQPTETPGIE NSLAEMSTMT LELQSLCSLL QESKEEAVRT bmy_00112T0/1-1140 AFTRVASTVS HQPTETPGIE XSLAEMSTMT LELQSLCSLL QESKEEAVRT BACU018839/1-1191 AFTRVASTVS HQPTETPGIE NSLAEMSTMT LELQSLCSLL QESKEEAVRT 1001 1050 ENSBTAP00000017417/1-1193 LQQKICDLQA QLQAQEEQHQ EAQKAKEADI EKLNQTLCLR YKNEKELQEV ENSTTRP00000003831/1-1193 LQRKICDLQA QLQAQEEQHQ EAQKAKEADI EKLNQALCLR YKNEKELQEV bmy_00112T0/1-1140 LQRKICDLQA QLQAQEEQHQ EAQKAKEADI EKLNQALCLR YKNEKELQEV BACU018839/1-1191 LQRKICDLQA QLQAQEEQHQ EAQKAKEVDI EKLNQALCLR YKNEKELQEV 1051 1100 ENSBTAP00000017417/1-1193 IQQQNEKILE QIDKSGELIR LREEVTQLTR SLRRAETETK VLQETLAGQQ ENSTTRP00000003831/1-1193 VQQQNEKILE QIDKSGELIR LREEVTQLTR SLRRAETETK VLQETLAGQL bmy_00112T0/1-1140 IQQQNEKILE QIDKSGELIR LREEVTQLTR SLRRAETETK VLQETLAGQL BACU018839/1-1191 IQQQNEKILE QIDKSGELIR LREEVTQLTR SLRRAETETK VLQETLAGQL 1101 1150 ENSBTAP00000017417/1-1193 NPDCQPMDTN WIQEKVWLSQ EVDKLRVMFL EMKNEKAKLM VKFQSHRNIL ENSTTRP00000003831/1-1193 NPDSQPMATN WIQEKVWLSQ EVDKLRVMFL EMKNEKAKLM VKFQSHRNIL bmy_00112T0/1-1140 NPDSQPMATN WIQEKVWLSQ EVDKLRVMFL EMKNEKAKLM VKFQSHRNIL BACU018839/1-1191 NPDSQPMATN WIQEKVWLSQ EVDKLRVMFL EMKNEKAKLM VKFQSHRNIL 1151 1200 ENSBTAP00000017417/1-1193 EENLRRSDEE LKKLDDTVQH IYETLLSIPD VVNGCKELQG LLQFLS ENSTTRP00000003831/1-1193 EENLRRSDKE LKKLDDIVQH IYETLLSIPE VVRGCKELQG LLEFLS bmy_00112T0/1-1140 EENLRRSDKE LKKLDDIVQH IYETLLSIPE VVRGCKELQG LLEFLS BACU018839/1-1191 EENLRRSDKE LKKLDDIVQH IYETLLSIPE VVRGCKELQG LLEFLS