KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:22 2014 Check: 00 .. Name: ENSP00000415579/1-700 Len: 749 Check: 1517 Weight: 1.00 Name: ENSBTAP00000017390/1-631 Len: 749 Check: 436 Weight: 1.00 Name: ENSTTRP00000014847/1-647 Len: 749 Check: 8302 Weight: 1.00 Name: bmy_00234T0/1-591 Len: 749 Check: 577 Weight: 1.00 Name: BACU011292/1-677 Len: 749 Check: 9664 Weight: 1.00 // 1 50 ENSP00000415579/1-700 ---------- ---------- ---------- ---MAATEIS VLSEQFTKIK ENSBTAP00000017390/1-631 ---------- ---------- ---------- ---MAGAELS VPPEQFTQIK ENSTTRP00000014847/1-647 ---------- ---------- ---------- ---MAGTEIS VPPEQFTKSK bmy_00234T0/1-591 ---------- ---------- ---------- ---MAGTEIS VPPEQFTKIK BACU011292/1-677 MDPLCSAVNS IGKNDNRSGT ERSSSLALPD QVTMAGTEIS VPPEQFTKIK 51 100 ENSP00000415579/1-700 ELELMPEKGL KEEEK----- DGVCREKDHR SPSELEAERT SGAFQDSVLE ENSBTAP00000017390/1-631 EPELIPDRAL EEEKEEENDN DGVRRVKEQS GSAGLEVESA QGPFQTTILE ENSTTRP00000014847/1-647 EPELITEKAL EEEE------ EGVCRAREHP SSEELEAEST HGALQAKIPG bmy_00234T0/1-591 EGVLITEKAL EEGE------ DGVCRVREHP SSEELEAEST HGALQAKIPG BACU011292/1-677 EGVLITEKAL EEGE------ DGVCRVREHP SSEELEAEST HGALQAKIPG 101 150 ENSP00000415579/1-700 EEVELVLAPS EESEKYILTL QTVHFTSEAV ELQDMSLLSI QQQEGVQVVV ENSBTAP00000017390/1-631 EVPELVLAAP EEIERHLLTL QTVHFPSEEA ELQD---LS- ---------- ENSTTRP00000014847/1-647 DELELLLAIP EEGEKHILTL QMVHLTSEDA ELQN---LT- QHQEEVQGTV bmy_00234T0/1-591 GELELVLAIP EEGEKHVLTL QTAHLTSEEA ELQD---LAP QHQGEVPVVV BACU011292/1-677 GKLELVLAIP EEGEKHILTL QTAHLTSEDA ELQD---LAP QHQGEVPEVV 151 200 ENSP00000415579/1-700 QQPGPGLL-- -WLEEGPRQS LQQCVAISIQ QELYSPQEME VLQFHALEEN ENSBTAP00000017390/1-631 ---------- -WLDPQQED- -------EMQ EEVYSLQQME VMQFQLLEEN ENSTTRP00000014847/1-647 QQAGSGLQSL VWLGEGSQQS PHQCVTISIQ EEVYLLQEVE VMQFHVLEEN bmy_00234T0/1-591 QQAGSGLQSL VWLGEGSQQS LHQCVTISIQ EEVYTLQEVE VMQFHVLEEN BACU011292/1-677 QQAGSGLQSL VWLGEGSQQS LHQCVTISIQ EEMYPLQEVE VMQFHVLEEN 201 250 ENSP00000415579/1-700 VMVASEDSKL AVSLAETTGL IKLEEEQEKN QLLA-----E RTKEQLFFVE ENSBTAP00000017390/1-631 VTGAVEDCKS AVSLEESTGS IKLQKGQEEE QLLTEGGFSE KAEEQFFLVE ENSTTRP00000014847/1-647 VTGASEDSKC AVSLAESSGS RKLEKGQEEE RLLAEVGSSE ETEGQFLLLE bmy_00234T0/1-591 VTGASDDSKC AVSLAESSGS VKLEKGQEEE QLLAEGGFSE ETEGQFFLVE BACU011292/1-677 VTRASEDSKC AVSLAESSGS IKLEKRQEEE QLLVEGGFSE ETEGQFFLVE 251 300 ENSP00000415579/1-700 TMSGDERSDE IVLTVSNSNV EEQEDQPTAG QADAEKAKST KNQRKTKGAK ENSBTAP00000017390/1-631 ARPGDEGRDE IVLTFSNLNM EEQKEKPELS QAHLEKPSTT KNRNKAKEVK ENSTTRP00000014847/1-647 VRPGDEGRVE IVLTISPLNI E----KPALG QARVEEANAT ESQKKTKEGK bmy_00234T0/1-591 ARPGD----E IVLTISTLNI E----KPALG EAHVEKANAT KSRKKTKEVK BACU011292/1-677 ARPGD----E IVLTISTSNT E----KPALG QAHVEKANAT KSRKKTKEVK 301 350 ENSP00000415579/1-700 GTFHCDVCMF TSSRMSSFNR HMKTHTSEKP HLCHLCLKTF RTVTLLRNHV ENSBTAP00000017390/1-631 QTFHCNFCKF TSSRISSVNR HMKIHSTEKP HVCHLCLKAF RTVTLLRNHV ENSTTRP00000014847/1-647 RTFHCDICTF TSSRISSLNR HMKTHTNEKP YTCHLCLKAF RTVTVLRNHI bmy_00234T0/1-591 RTFHCDICMF TSSRISSLNR HMKTHTNEKP HMCHLCLKAF RTVTLLRNHI BACU011292/1-677 RTFHCDICMF TSSRISSLNR HMKTHTNEKP HMCHLCLKAF RTVTLLRNHI 351 400 ENSP00000415579/1-700 NTHTGTRPYK CNDCNMAFVT SGELVRHRRY KHTHEKPFKC SMCKYASVEA ENSBTAP00000017390/1-631 NTHTGTRPHK CGDCDMAFVT SGELVRHRRY KHTHEKPFKC SMCKYASVEA ENSTTRP00000014847/1-647 NTHTGTRPYK CGDCDMAFVT SGERARHRRY KHTHEKPFKC SMCKYASVEA bmy_00234T0/1-591 NTHTGTRPYK CGDCDMAFVT SGELVRHRRY KHTHEKPFKC SMCKYASVEA BACU011292/1-677 NTHTGTRPYK CGDCDMAFVT SGELVRHRRY KHTHEKPFKC SMCKYASVEA 401 450 ENSP00000415579/1-700 SKLKRHVRSH TGERPFQCCQ CSYASRDTYK LKRHMRTHSG EKPYECHICH ENSBTAP00000017390/1-631 SKLKRHIRSH TGERPFQCSL CSYASKDTYK LKRHMRTHSG EKPYECHICR ENSTTRP00000014847/1-647 SKLKRHIRSH TGERPFQCHL CSYAGKDACK VKRHMRTHSG ERPYECHICH bmy_00234T0/1-591 SKLKRHIRSH TGERPFQCCL CSYAGKDTYK LKRHMRTHSG ---------- BACU011292/1-677 SKLKRHIRSH TGERPFQCCL CSYAGKDPYK LKRHMRTHSG ERPYECHICH 451 500 ENSP00000415579/1-700 TRFTQSGTMK IHILQKHGEN VPKYQCPHCA TIIARKSDLR VHMRNLHAYS ENSBTAP00000017390/1-631 ARFTQSGTMK MHILQKHSEN VPKYQCPHCA TVIARKSDLR VHLRNLHTYK ENSTTRP00000014847/1-647 ARFTQSGTMK IHVLQKHGEN VPKYQCPHCD TVTARKSDLR VHLLKLHTYE bmy_00234T0/1-591 ---------- ---------- ---------- ---------- VHLRNLHTYK BACU011292/1-677 ARFTQRGTMK IHILQKHTEN VPKYQCPHCA TVIARKSDLR VHLHNLHTYR 501 550 ENSP00000415579/1-700 AAELKCRYCS AVFHERYALI QHQKTHKNEK RFKCKHCSYA CKQERHMTAH ENSBTAP00000017390/1-631 AAEMKCRYCP AVFHDRYTLI QHQKTHKNEK KFKCGYCSYV CKQERHMTVH ENSTTRP00000014847/1-647 AAEMKCRYCS AVFHERYALI QHQKTHKNEK RFKCEHCSYA CKQERHMTVH bmy_00234T0/1-591 AAEMKCHYCP AVFHERHALL QHHKTHKNEK RFK------- --------FH BACU011292/1-677 AAEMKCHYCP AVFHVRHALL QHHKTHRNEK RFKCEHCSYA CKQERHMTVH 551 600 ENSP00000415579/1-700 IRTHTGEKPF TCLSCNKCFR QKQLLNAHFR KYHDANFIPT VYKCSKCGKG ENSBTAP00000017390/1-631 IRTHTGEKPF ICLACTKCFR QQQLLNVHSK KQHNINFVPT VYECPKCGKG ENSTTRP00000014847/1-647 IRTHTGEKPF ACLSCNRRFP QKQLLNVHFK KYHDTTFVPT VYKCPRCGKG bmy_00234T0/1-591 IRTHTGEKPF ACPSCNRCFR QKQLLNVHFK KYHDTTFVPT VYKCPRCGKG BACU011292/1-677 IRTHTGEKPF ACPSCNRCFR QQQLLNVHFK KYHDTTFVPT VYKCPRCGKG 601 650 ENSP00000415579/1-700 FSRWINLHRH SEKCGSGEAK SAASGKGRRT RKRKQTILKE ATKGQKEAAK ENSBTAP00000017390/1-631 FSRWGNMHRH SKKCNSGQET PTPVEKERAT K-RKPASPRE PAK------- ENSTTRP00000014847/1-647 FTRLNNMQRH LKKCGSRQEK PTTSEKGRRT KMRKPTIPKE TAK------- bmy_00234T0/1-591 FSRLNNMQRH LKKCGSGQEK PTTSEKGRRT KKRKPTIPKE TAK------- BACU011292/1-677 FSRLNNMQRH LKTCGSGQEK PTTSEKGRRT KKRKPTIPKE TAK------- 651 700 ENSP00000415579/1-700 GWKEAANGDE AAAEEASTTK GEQFPGEMFP VACRETTARV KE---EVDEG ENSBTAP00000017390/1-631 -------EDE AAAKEVSLVS GELYPGEMVP IDFLEAKTGG EDLEQDLEQD ENSTTRP00000014847/1-647 -------EDE AAAEEASLVS GEQYPGGLVP IDFGEAMAGG E----DPDED bmy_00234T0/1-591 -------EDE AAAEEASLVS GEQYPGGLVP IDFGEATAGG E----DLDED BACU011292/1-677 -------EAE AAAEEASLVS GEQYPGGLVP IDFGEATAGG E----DLDED 701 750 ENSP00000415579/1-700 VTCEMLLNTM DNSAGCTGRM MLVSAWLLGR PQETYNQGRR RRGSRRVTW ENSBTAP00000017390/1-631 LTCDMILALM NK-------- ---------- ---------- --------- ENSTTRP00000014847/1-647 MTCEMILAMM EN-------- ---------- ---------- --------- bmy_00234T0/1-591 MTCEMILAMM EKYEVPPLHS VIAY------ ---------- --------- BACU011292/1-677 MTCEMILAMM EK-------- ---------- ---------- ---------