KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:01:10 2014 Check: 00 .. Name: BACU015372/1-641 Len: 710 Check: 2404 Weight: 1.00 Name: bmy_13544T0/1-679 Len: 710 Check: 3637 Weight: 1.00 Name: ENSP00000389934/1-708 Len: 710 Check: 6176 Weight: 1.00 Name: ENSTTRP00000003287/1-701 Len: 710 Check: 7230 Weight: 1.00 Name: ENSBTAP00000017336/1-708 Len: 710 Check: 7129 Weight: 1.00 // 1 50 BACU015372/1-641 MATTAELFE- ---------- VGPRSFSGS- --GRPEVQAA RLLEEFVNHI bmy_13544T0/1-679 MATTAELFEE PFVADEYIER LVWRTPGGGS RGGPEAFDPK RLLEEFVNHI ENSP00000389934/1-708 MATTAELFEE PFVADEYIER LVWRTPGGGS RGGPEAFDPK RLLEEFVNHI ENSTTRP00000003287/1-701 ---------E PFVADEYIER LVWRTPGGGS RGGPEAFDPK RLLEEFVNHI ENSBTAP00000017336/1-708 MATTAELFEE PFVADEYIER LVWRTPGGGS RGGPEAFDPK RLLEEFVNHI 51 100 BACU015372/1-641 QELQIMDERI QRKVEKLEQQ CQKEAKEFAK KVQELQKSNQ VAFQHFQELD bmy_13544T0/1-679 QELQIMDERI QRKVEKLEQQ CQKEAKEFAK KVQELQKSNQ VAFQHFQELD ENSP00000389934/1-708 QELQIMDERI QRKVEKLEQQ CQKEAKEFAK KVQELQKSNQ VAFQHFQELD ENSTTRP00000003287/1-701 QELQIMDERI QRKVEKLEQQ CQKEAKEFAR KVQDLQKSNQ VAFQHFQELD ENSBTAP00000017336/1-708 QELQIMDERI QRKVEKLEQQ CQKEAKEFAR KVQELQKSNQ VAFQHFQELD 101 150 BACU015372/1-641 EHISYVATKV CHLGDQLEGV NTPRQRAVEA QKLMKYFNEF LDGELKSDVF bmy_13544T0/1-679 EHISYVATKV CHLGDQLEGV NTPRQRAVEA QKLMKYFNEF LDGELKSDVF ENSP00000389934/1-708 EHISYVATKV CHLGDQLEGV NTPRQRAVEA QKLMKYFNEF LDGELKSDVF ENSTTRP00000003287/1-701 EHISYVATKV CHLGDQLEGV NTPRQRAVEA QKLMKYFNEF LDGELKSDVF ENSBTAP00000017336/1-708 EHISYVATKV CHLGDQLEGV NTPRQRAVEA QKLMKYFNEF LDGELKSDVF 151 200 BACU015372/1-641 TNSEKLN--- DIL------- ---------- ----FLGKYH DLECQLIQEF bmy_13544T0/1-679 TNSEKIKEAA DIIQKLHLIA QELPFDRQVY FSRANLSKYH DLECQLIQEF ENSP00000389934/1-708 TNSEKIKEAA DIIQKLHLIA QELPFDRFSE VKSKIASKYH DLECQLIQEF ENSTTRP00000003287/1-701 TNSEKIKEAA DIIQKLHLIA QELPFDRFSE VKSKIASKYH DLECQLIQEF ENSBTAP00000017336/1-708 TNSEKIKEAA DIIQKLHLIA QELPFDRFSE VKSKIASKYH DLECQLIQEF 201 250 BACU015372/1-641 TGAQRRGEIT RMREVAAVLL HFKGYSHCVD VYIKQCQEGA YLRNDIFEDA bmy_13544T0/1-679 TSAQRRGEIT RMREVAAVLL HFKGYSHCVD VYIKQCQEGA YLRNDIFEDA ENSP00000389934/1-708 TSAQRRGEIS RMREVAAVLL HFKGYSHCVD VYIKQCQEGA YLRNDIFEDA ENSTTRP00000003287/1-701 TGAQRRGEIS RMREVAAVLL HFKGYSHCVD VYIKQCQEGA YLRNDIFEDA ENSBTAP00000017336/1-708 TGAQRRGEIS RMREVAAVLL HFKXXSHCVD VYIKQCQEGA YLRNDIFEDA 251 300 BACU015372/1-641 AILCQRVNKQ VGDIFSNPET VLAKLIQNVF EIKLQSFVKD QLEECRKSDA bmy_13544T0/1-679 TILCQRVNKQ VGDIFSNPET VLAKLIQNVF EIKLQSFVKD QLEECRKSDA ENSP00000389934/1-708 GILCQRVNKQ VGDIFSNPET VLAKLIQNVF EIKLQSFVKE QLEECRKSDA ENSTTRP00000003287/1-701 AILCQRVNKQ VGDIFSNPET VLAKLIQNVF EIKLQSFVKD QLEECRKSDA ENSBTAP00000017336/1-708 AILCQRVNKQ VGDIFSNPET VLAKLIQNVF EIKLQSFVKD QLQECWKSDA 301 350 BACU015372/1-641 EQYLKSLYDL YT--RTTNLS SKLMEFNLGT DKQTFLSKLI KSIFISYLEN bmy_13544T0/1-679 EQYLKSLYDL YT--RTTNLS SKLMEFNLGT DKQTFLSKLI KSIFISYLEN ENSP00000389934/1-708 EQYLKNLYDL YT--RTTNLS SKLMEFNLGT DKQTFLSKLI KSIFISYLEN ENSTTRP00000003287/1-701 EQYLKSLYDL YTRKRTTNLS SKLMEFNLGT DKQTFLSKLI KSIFISYLEN ENSBTAP00000017336/1-708 EQYLKSLYDL YT--RTTNLS SKLMEFNLGT DKQTFLSKLI KSIFISYLES 351 400 BACU015372/1-641 YIEVETGYLK SRSAMILQRY YDSKNHQKRS IGTGGIQDLK ERIRQRTNLP bmy_13544T0/1-679 YIEVETGYLK SRSAMILQRY YDSKNHQKRA IGTGGIQDLK ERIRQRTNLP ENSP00000389934/1-708 YIEVETGYLK SRSAMILQRY YDSKNHQKRS IGTGGIQDLK ERIRQRTNLP ENSTTRP00000003287/1-701 YIEVETGYLK SRSAMILQRY YDSKNHQKRS IGTGGIQDLK ERIRQRTNLP ENSBTAP00000017336/1-708 YIEIETGYLK SRSAMILQRY YDSKNHQKRS IGTGGIQDLK ERIRQRTNLP 401 450 BACU015372/1-641 LGPSIDTHGE TFLSQEVVVN LLQETKQAFE RCHRLSDPSD LPRNAFRIFT bmy_13544T0/1-679 LGPSIDTHGE TFLSQEVVVN LLQETKQAFE RCHRLSDPSD LPRNAFRIFT ENSP00000389934/1-708 LGPSIDTHGE TFLSQEVVVN LLQETKQAFE RCHRLSDPSD LPRNAFRIFT ENSTTRP00000003287/1-701 LGPSIDTHGE TFLSQEVVVN LLQETKQAFE RCHRLSDPSD LPRNAFRIFT ENSBTAP00000017336/1-708 LGPSIDTHGE TFLSQEVVVN LLQETKQAFE RCHRLSDPSD LPRNAFRIFT 451 500 BACU015372/1-641 ILVEFLCIEH IDYALETGLA GIPSSDSRNA NLYFLDVVHQ ANTVFHLFDK bmy_13544T0/1-679 ILVEFLCIEH IDYALETGLA GIPSSDSRNA NLYFLDVVHQ ANTVFHLFDK ENSP00000389934/1-708 ILVEFLCIEH IDYALETGLA GIPSSDSRNA NLYFLDVVQQ ANTIFHLFDK ENSTTRP00000003287/1-701 ILVEFLCIEH IDYALETGLA GIPSSDSRNA NLYFLDVVHQ ANTIFHLFDK ENSBTAP00000017336/1-708 ILVEFLCIEH IDYALETGLA GIPSSDSKNA NLYFLDVVHQ ANTIFHLFDK 501 550 BACU015372/1-641 QFNDHLMPLI ---------- ---------- ---------R TLNCMIGQMK bmy_13544T0/1-679 QFNDHLMPLI ---------- ---------- ---------R TLNCMIGQMK ENSP00000389934/1-708 QFNDHLMPLI SSSPKLSECL QKKKEIIEQM EMKLDTGIDR TLNCMIGQMK ENSTTRP00000003287/1-701 QFNDHLMPLI SSSPKLSECL QKKKEIIEQM EMKLDTGIDR TLNCMIGQMK ENSBTAP00000017336/1-708 QFNDHLMPLI SSSPKLSECL QKKKEIIEQM EMKLDTGIDR TLNCMIGQMK 551 600 BACU015372/1-641 HILAAEQKKT DFKPEDENNV LIQYTNACVK VCAYVRKQVE KIKNSMDGKN bmy_13544T0/1-679 HILAAEQKKT DFKPEDENNV LIQYTNACVK VCAYVRKQVE KIKNSMDGKN ENSP00000389934/1-708 HILAAEQKKT DFKPEDENNV LIQYTNACVK VCAYVRKQVE KIKNSMDGKN ENSTTRP00000003287/1-701 HILAAEQKKT DFKPEDENNV LIQYTNACVK VCAYVRKQVE KIKNSMDGKN ENSBTAP00000017336/1-708 HILAAEQKKT DFKPEDENNV LIQYTNACVK VCAYVRKQVE KIKNSMDGKN 601 650 BACU015372/1-641 VDTVLMELGV RFHRLIYEHL QQYSYSCMGG MLAICDVAEY RKCAKDFKIP bmy_13544T0/1-679 VDTVLMELGV RFHRLIYEHL QQYSYSCMGG MLAICDVAEY RKCAKDFKIP ENSP00000389934/1-708 VDTVLMELGV RFHRLIYEHL QQYSYSCMGG MLAICDVAEY RKCAKDFKIP ENSTTRP00000003287/1-701 VDTVLMELGV RFHRLIYEHL QQYSYSCMGG MLAICDVAEY RKCAKDFKIP ENSBTAP00000017336/1-708 VDTVLMELGV RFHRLIYEHL QQYSYSCMGG MLAICDVAEY RKCAKDFKIP 651 700 BACU015372/1-641 LVLQLFDTLH ALCNLLVVNP DNLKQVCSGE QLANLDKNIL HSFVQLRADY bmy_13544T0/1-679 LVLQLFDTLH ALCNLLVVNP DNLKQVCSGE QLANLDKNIL HSFVQLRADY ENSP00000389934/1-708 MVLHLFDTLH ALCNLLVVAP DNLKQVCSGE QLANLDKNIL HSFVQLRADY ENSTTRP00000003287/1-701 LVLQLFDTLH ALCNLLVVNP DNLKQVCSGE QLANLDKNIL HSFVQLRADY ENSBTAP00000017336/1-708 LVLQLFDTLH ALCNLLVVNP DNLKQVCSGE QLANLDKNIL HSFVQLRADY 701 750 BACU015372/1-641 RSARLARHFS bmy_13544T0/1-679 RSARLARHFS ENSP00000389934/1-708 RSARLARHFS ENSTTRP00000003287/1-701 RSARLARHFS ENSBTAP00000017336/1-708 RSARLARHFS