KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:51 2014 Check: 00 .. Name: ENSP00000283713/1-856 Len: 1125 Check: 9076 Weight: 1.00 Name: ENSBTAP00000017231/1-889 Len: 1125 Check: 6677 Weight: 1.00 Name: ENSTTRP00000005135/1-844 Len: 1125 Check: 3209 Weight: 1.00 Name: bmy_14190T0/1-826 Len: 1125 Check: 7896 Weight: 1.00 Name: BACU014626/1-1019 Len: 1125 Check: 2448 Weight: 1.00 // 1 50 ENSP00000283713/1-856 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017231/1-889 MEHNKDAVWR ANGCLQSVCI ACL------- ---------- ---------- ENSTTRP00000005135/1-844 ---------- ---------- ---------- ---------- ---------- bmy_14190T0/1-826 ---------- ---------- ---------- ---------- ---------- BACU014626/1-1019 -MHIRRAASQ CNVSLKKQRS RSILSSFFCC FRDYNVEAPP GSSPGVLPPL 51 100 ENSP00000283713/1-856 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017231/1-889 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005135/1-844 ---------- ---------- ---------- ---------- ---------- bmy_14190T0/1-826 ---------- ---------- ---------- ---------- ---------- BACU014626/1-1019 VEENGGLQKP PAKYLLPEVT VLDYGKKCVV IDLDETLVHS SFKPISNADF 101 150 ENSP00000283713/1-856 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017231/1-889 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005135/1-844 ---------- ---------- ---------- ---------- ---------- bmy_14190T0/1-826 ---------- ---------- ---------- ---------- ---------- BACU014626/1-1019 IVPVEIDGTI HQVYVLKRPH VDEFLQRMGQ LFECVLFTAS LAKYADPVAD 151 200 ENSP00000283713/1-856 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000017231/1-889 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005135/1-844 ---------- ---------- ---------- ---------- ---------- bmy_14190T0/1-826 ---------- ---------- ---------- ---------- ---------- BACU014626/1-1019 LLDRWGVFRA RLFQSCVFHR GNYVKDLSRL GRELSKVIIV DNSPASYIFH 201 250 ENSP00000283713/1-856 ---------- -------MDI SKGLPGMQG- -GLHIWISEN RKMVPVPEGA ENSBTAP00000017231/1-889 ---------- -------MDT RRGLPDIESH RDLHIWIIEN LQMVPVPEPA ENSTTRP00000005135/1-844 ---------- -------MDT NRGLPAIESH RDLHIWITEN LKMVPVPERA bmy_14190T0/1-826 ---------- -------MDT NGGLPAIESH RDLHIWITEN LKMVPVPERA BACU014626/1-1019 PENAHFGLRT AVLSEEKMDT NGGLPAIGSR RDLHIWITEN LRMVPVPERA 251 300 ENSP00000283713/1-856 YGNFFEEHCY VILH------ -VPQSPKATQ GASSDLHYWV GKQAGAEAQG ENSBTAP00000017231/1-889 YGNFFEKHCY VVLH------ -VPQSLKATP GVPKDLHYWV GKMAAPGAQG ENSTTRP00000005135/1-844 YGNFFEEHCY IVLH------ -VPQSLKTTS GAPKDLHYWV GKEAGVEAQG bmy_14190T0/1-826 YGNFFEEHCY IVLHMQTPGP SVHQSLKATS GAPKDLHYWV GKEAGVEAQG BACU014626/1-1019 YGNFFEEHCY IVLH------ ----SLKATS GAPKDLHYWV GKEAGVEAQG 301 350 ENSP00000283713/1-856 AAEAFQQRLQ DELGGQTVLH REAQGHESDC FCSYFRPGII YRKGGLASDL ENSBTAP00000017231/1-889 APGSFLQHLK EALGGATVQH REVQGHESAC FRSYFRSGII YRKGGLASAL ENSTTRP00000005135/1-844 TAGSFVQHLQ EALGGATVQH REAQGHESAC FRSYFRPGII YRKGGLASAL bmy_14190T0/1-826 TAGSFVQHLQ ETLGGATVQH REAQGHESAC FRSYFRPGII YRKGGLASAL BACU014626/1-1019 TAGSFVQHLQ ETLGGATVQH REAQGHESAC FRSYFRPGII YRKGGLASAL 351 400 ENSP00000283713/1-856 KHVETNLFNI QRLLHIKGRK HVSATEVELS WNSFNKGDIF LLDLGKMMIQ ENSBTAP00000017231/1-889 KHVETNVYNI QRLLRIRGGK HVSATEVELS WHSFNNSDVF LLDLGRMMIQ ENSTTRP00000005135/1-844 KHVETNVYNI QRLLHIRAGK HVSASEVELS WHSFNKSDIF LLDLGKMMIQ bmy_14190T0/1-826 KHVETNVYNI QRLLRIRAGK HVSASEVELS WHSFNKSDIF LLDLGKMMIQ BACU014626/1-1019 KHVETNVYNI QRLLHIRAGK HVSASEVELS WHSFNKSDIF LLDLGKMMIQ 401 450 ENSP00000283713/1-856 WNGPKTSISE KARGLALTYS LRDRERGGGR AQIGVVDDEA KAPDLMQIME ENSBTAP00000017231/1-889 WNGPKASAAR KARGLFLTHS LRDRERG-GR AQVSVVDDEA EATDLMEIME ENSTTRP00000005135/1-844 WNGPKTSTAE KARGLALTRS LQDRERG-GR AQIGVVDDEA EATDLMQIME bmy_14190T0/1-826 WNGPKTSTAE KARGLALTRS LQDRERG-GR AQIGVVDDEA EATDLMQIME BACU014626/1-1019 WNGPKTSTAE KARGLALTRS LQNRERG-GR AQIGVVDDEA EATDLMQIME 451 500 ENSP00000283713/1-856 AVLGRRVGSL RAATPSKDIN QLQKANVRLY HVYEKGKDLV VLELATPPLT ENSBTAP00000017231/1-889 AVLGRRVGSL HAAMPSKRMN QLQKANVHLY QVCQKSKDLV VQELSTCPLT ENSTTRP00000005135/1-844 AVLGCRVGNL HTAMPSKSTD QLQKANVRLY XXXXXXXXXX XXXXXXXXXX bmy_14190T0/1-826 AVLGCRVGNL HTATPSKSID QLQKANVRLY HVYEKGKDVV IQELATCPLA BACU014626/1-1019 AVLGCRVGNL HTAMPSKSTD QLQKANVRLY HVYEKGKDVV IQELATCPLA 501 550 ENSP00000283713/1-856 QDLLQEEDFY ILDQGGFKIY VWQGRMSSLQ ERKAAFSRAV GFIQAKGYPT ENSBTAP00000017231/1-889 QDLLQEENCY ILDQGGFKIY VWQGRRASLQ ERGAAFRRAL NFIQAKGYPS ENSTTRP00000005135/1-844 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX GFIQAKGYPS bmy_14190T0/1-826 QDLLQKEDCY ILDQGGFKIY VWQGCMTSHQ EKKAAFSRAL GFIQAKGYPS BACU014626/1-1019 QDLLQKEDCY ILDQGGFKIY VWQGCMTSLQ EKKAAFSRAL ---------- 551 600 ENSP00000283713/1-856 YTNVEVVNDG AESAAFKQLF RTWSEKRRRN QKLGGRDKSI HVKLDVGKLH ENSBTAP00000017231/1-889 YTSVEVMDDG AESAGFKQLF RSWSGQQRKN KNLSGMGKLL QVKLDVGKLH ENSTTRP00000005135/1-844 YTNVEVVDEG AESAAFKQLF RSWSGEQRKN KHLRGMGKLL QVKLDVGKLH bmy_14190T0/1-826 YTNVEVVXEG AESAAFKQLF RSWSGQQRKN KHLRGMGKLL QVKLDVGKLH BACU014626/1-1019 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000283713/1-856 TQPKLAAQLR MVDDGSGKVE VWCIQDLHRQ PVDPKRHGQL CAGNCYLVLY ENSBTAP00000017231/1-889 SQPELAAQLR MVDDASGSVQ IWCIQDSHRQ PVDPKRHGQL CADSCYLVLY ENSTTRP00000005135/1-844 SHPELAAQLR MVDDGSGKVE VWYIQGSRRQ PVDPMHHGQL CAGNCYLVLY bmy_14190T0/1-826 SHPELAAQIR MVDDGSGKVE VWYVQDSCRQ PVDPTHHGQL CAGNCYLVLY BACU014626/1-1019 ---------- ---------- VWYIQDSCRQ PVDPTHHGQL CAGNCYLVLY 651 700 ENSP00000283713/1-856 TYQRLGRVQY ILYLWQGHQA TADEIEALNS NAEELDVMYG GVLVQEHVTM ENSBTAP00000017231/1-889 TYRRMGFVQH VLYLWQGLQA TAHEISALRG NAEELDLWYR GALVQEHVTM ENSTTRP00000005135/1-844 TYQKMGLDQY ILYLWQGLQA TAHEIKALKG NAEELDLQYH RALVQEHVTM bmy_14190T0/1-826 TYQKMGLIQY XLYLWQGLQA AAHEIKALKG NAEELDLQYH GALVQEHVTM BACU014626/1-1019 TYQKMGLVQY ILYLWQGLQA AAHEIKALKG NAEELDLQYH GALVQEHVTM 701 750 ENSP00000283713/1-856 GSEPPHFLAI FQGQLVIFQE RA-------- ---------- -GH------- ENSBTAP00000017231/1-889 GSEPPHFLAI FQGQLVIFQG HP-------- ---------- -RH------- ENSTTRP00000005135/1-844 GSEPPHFLAI FQGQLVIFQG SA-------- ---------- -GH------- bmy_14190T0/1-826 GSEPPHFLTI FQGQLVIFQG SA-------- ---------- -GH------- BACU014626/1-1019 GSEPPHFLTI FQGQLVIFQR QPQNRRTSVE AERKGSRGLT WGHTQAKLLP 751 800 ENSP00000283713/1-856 ----HGKGQS ASTTR---LF QVQGTDSHNT RTMEVPARAS SLNSSDIFLL ENSBTAP00000017231/1-889 ----SRKGQP APAVS---LF HIQGTDSYNT RTMEVPARAS ALNSSDVFLL ENSTTRP00000005135/1-844 ----NGKGQP ESATR---LF HVQGTDSYNT WTLEVPARAS ALNSNDIFLL bmy_14190T0/1-826 ----NGKGQP ASATR---LF HVRGTDSYNT WTLEVPARAS ALNSNDIFLL BACU014626/1-1019 TFRLQGLGDP CSDPSEMGLF HVRGTDSYNT WTLEVPARAS ALNSNDIFLL 801 850 ENSP00000283713/1-856 VTASVCYLWF GKGCNGDQRE MARVVVTVIS RKNEETVLEG QEPPHFWEAL ENSBTAP00000017231/1-889 VTANLCYLWF GKGCSGDQRE MARTVVTIIC REDMEIVLEG QEPPNFWEAL ENSTTRP00000005135/1-844 ATASLCYLWF GKGCSGDQRE MARTVVTVIS RKDKEMVLEG QEPPHFWEAL bmy_14190T0/1-826 ATSGLCYLWF GKGCSGDQRE MARTVVTVIS RKDKEM---- ---------- BACU014626/1-1019 ATAGLCYLWF GKGCSGDQRE MARTVVTVIS RKDKEMVLEG QEPSHFWEAL 851 900 ENSP00000283713/1-856 GGRAPYPSNK RLPEEVPSFQ PRLFECSSHM GCLVLAEVGF FSQEDLDKYD ENSBTAP00000017231/1-889 GGRAPYRSNK RPPEDVCDFQ PRLFECSCQA GPLVLTEVVF FSQEDLDKYD ENSTTRP00000005135/1-844 GGRAPYPSSK RLPEDVSDFQ PRLFECSIQT GPLVLTEVVF FSQEDLDKYD bmy_14190T0/1-826 ---------- ---------- PRLFECSIQT GPLVLTEVVF FSQEDLDKYD BACU014626/1-1019 GGRAPYPSSK RLPEDVSDFQ PRLFECSIQT GSLVLTEVVF FSQEDLDKYD 901 950 ENSP00000283713/1-856 IMLLDTWQEI FLWLGEAASE WK-EAVAWGQ EYLKTHPAGR SPATPIVLVK ENSBTAP00000017231/1-889 VMLLDAWQEI FLWLGAAASE WKQEAVAWGQ EYLKTHPAGR SLATPIVLVK ENSTTRP00000005135/1-844 VMLLDTWEEX XXXXXXXXXX XX-XXXXXXX XXXXXXPAGR SVT--IVLVK bmy_14190T0/1-826 VMLLDTWEEI FLWLGAAASE WKQEAVAWGR EYLKTHPAGR SLATPIVLVQ BACU014626/1-1019 VMLLDTWEEI FLWLGAAASE WKQEAVAWGR EYLKTHPAGR SLATPIVLVK 951 1000 ENSP00000283713/1-856 QGHEPPTFIG WFFTWDPYKW TSHPSHKEVV DGSPAAASTI SEITAEVNNL ENSBTAP00000017231/1-889 QGHEPPTFIG WFCTWDPYKW SNTQSYEEVV AGDPGAVSTI SEITAEIVNF ENSTTRP00000005135/1-844 QG-EPP-FTG WFHNWD-YKW TNNQSYEEVV EGGLGAVSAI SERTAQVSSF bmy_14190T0/1-826 QGHEPPTFTG WFHTWDPYKW TNNQSYEEVV EGGLGAVSAI SEITAEVNNF BACU014626/1-1019 QGHEPPTFTG WFHMWDPYKW TNNQSYEEVV EGGLGAVSAI SEITAEVNNF 1001 1050 ENSP00000283713/1-856 RLSRWPGNGR AGAVALQALK GSQDSSENDL VRSPKSAGSR TSSSV----- ENSBTAP00000017231/1-889 RLSRWPGNDR AGPLALRALK SSEDISESEL ELGPR-AGTG SRSTVSSASS ENSTTRP00000005135/1-844 RLSRSPRNGR AGPLALWALK GSKDSSENEL ERGPK-AGSG ---------- bmy_14190T0/1-826 QLSRWPSNGR AGPLALWTLK GSNDSSENEL ELGPK-AGSG S--------- BACU014626/1-1019 RLSRWPSNGR AGPLALSALK GSKDSSENEL ELGSK-AGSG S--------- 1051 1100 ENSP00000283713/1-856 ----SSTSAT INGGLRREQL MHQAVEDLPE GVDPARREFY LSDSDFQDIF ENSBTAP00000017231/1-889 SSYQSSPQSL GSGGLPREQL RHQAAEDLPE GVDPAHKEAY LSDSDFQDIF ENSTTRP00000005135/1-844 ------PRSV ASRSLPREQL RHQAVEDLPE GVDPAHKESY LSDSDFQDIF bmy_14190T0/1-826 ----SSPGSV ASRSLPREQL RHQAVEDLPE GVDPAHKESY LSDSDFQEIF BACU014626/1-1019 ----SSPGSV ASGSLPREQL RHQAVEDLPE GVDPAHKESY LSDSDFQEIF 1101 1150 ENSP00000283713/1-856 GKSKEEFYSM ATWRQRQEKK QLGFF ENSBTAP00000017231/1-889 GKSKEEFYSM AKWRQQQEKQ QLGFF ENSTTRP00000005135/1-844 GKSKEEFYSM AKWRQQQQKK QLGFF bmy_14190T0/1-826 GKSKEEFYSM AKWRQQQEKK QLGFF BACU014626/1-1019 GKSKEEFYSM AKWRQQQEKK QLGFF