KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:00:10 2014 Check: 00 .. Name: ENSTTRP00000006636/1-509 Len: 510 Check: 8468 Weight: 1.00 Name: bmy_00059T0/1-406 Len: 510 Check: 4187 Weight: 1.00 Name: ENSP00000265354/1-508 Len: 510 Check: 899 Weight: 1.00 Name: BACU017972/1-404 Len: 510 Check: 1379 Weight: 1.00 Name: ENSBTAP00000016981/1-509 Len: 510 Check: 3166 Weight: 1.00 // 1 50 ENSTTRP00000006636/1-509 MLPSQAGAAA ALGRGSALGG SLNRTPTGRP GGGGGGGTRG ANGGRVPGNG bmy_00059T0/1-406 MLPSQAGAAA ALGRGSALGG SLNRTPTGRP GGGGGGGTRG ANGGRVPGNG ENSP00000265354/1-508 MLPTQAGAAA ALGRGSALGG SLNRTPTGRP --GGGGGTRG ANGGRVPGNG BACU017972/1-404 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016981/1-509 MLPSQAGAAA ALGRGSALGG SLNRTPTGRP -GGGGGGTRG ANGGRVPGNG 51 100 ENSTTRP00000006636/1-509 AGLVPGRLER EAAAAATTTP APTAGALYSG SEGDSESGEE EELGAERRGL bmy_00059T0/1-406 AGLGPGRLER EAAAAATTTP APTAGALYSG SEGDSESGEE EELGAERRGL ENSP00000265354/1-508 AGLGPGRLER EAAAAAATTP APTAGALYSG SEGDSESGEE EELGAERRGL BACU017972/1-404 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000016981/1-509 AGLGPGRLER EAAAAATTTP APTAGALYSG SEGDSESGEE EELGAERRGL 101 150 ENSTTRP00000006636/1-509 KRSLSEMELG VVVGGPEAAA AATGGYGPVS GAVSGAKPGK KTRGRVKIKM bmy_00059T0/1-406 KRSLSEMELG VVVGGPEAAA AATGGYGPVS GAVSGAKPGK KTRGRVKIKM ENSP00000265354/1-508 KRSLSEMEIG MVVGGPEASA AATGGYGPVS GAVSGAKPGK KTRGRVKIKM BACU017972/1-404 ------MELG VVVGGPEAAA AATGGYGPVS GGVSGAKPGK KTRGRVKIKM ENSBTAP00000016981/1-509 KRSLSEMELG VVVGGPEAAA AATGGYGPVS GAVSGAKPGK KTRGRVKIKM 151 200 ENSTTRP00000006636/1-509 EFIDNKLRRY TTFSKRKTGI MKKAYELSTL TGTQVLLLVA SETGHVYTFA bmy_00059T0/1-406 EFIDNKLRRY TTFSKRKTGI MKKAYELSTL TGTQVLLLVA SETGHVYTFA ENSP00000265354/1-508 EFIDNKLRRY TTFSKRKTGI MKKAYELSTL TGTQVLLLVA SETGHVYTFA BACU017972/1-404 EFIDNKLRRY TTFSKRKTGI MKKAYELSTL TGTQVLLLVA SETGHVYTFA ENSBTAP00000016981/1-509 EFIDNKLRRY TTFSKRKTGI MKKAYELSTL TGTQVLLLVA SETGHVYTFA 201 250 ENSTTRP00000006636/1-509 TRKLQPMITS ETGKALIQTC LNSPDSPPRS DPTTDQRMSA TGFEETDLTY bmy_00059T0/1-406 TRKLQPMITS ETGKALIQTC LNSPDSPPRS DPTTDQRMSA TGFEETDLTY ENSP00000265354/1-508 TRKLQPMITS ETGKALIQTC LNSPDSPPRS DPTTDQRMSA TGFEETDLTY BACU017972/1-404 TRKLQPMITS ETGKALIQTC LNSPDSPPRS DPTTDQRMSA TGFEETDLTY ENSBTAP00000016981/1-509 TRKLQPMITS ETGKALIQTC LNSPDSPPRS DPTTDQRMSA TGFEETDLTY 251 300 ENSTTRP00000006636/1-509 QVSESDSSGE TKXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXVSSGPSFP bmy_00059T0/1-406 QVSESDSSGE TKDTLKPAFT VTNLPGTTST IQTAPSTSTT MQVSSGPSFP ENSP00000265354/1-508 QVSESDSSGE TKDTLKPAFT VTNLPGTTST IQTAPSTSTT MQVSSGPSFP BACU017972/1-404 QVSESDSSGE TKDTLKPAFT VTNLPGTTST IQTAPSTSTT MQVSSGPSFP ENSBTAP00000016981/1-509 QVSESDSSGE TKDTLKPAFT VTNLPGTTST IQTAPSTSTT MQVSSGPSFP 301 350 ENSTTRP00000006636/1-509 ITNYLA-VSA SVSPSAVSSA NGTVLKSTGS GPVSSGGLMQ LPTSFTLMPG bmy_00059T0/1-406 ITNYLAPVSA SVSPSAVSSA NGTVLKSTGS GPVSSGGLMQ LPTSFTLMPG ENSP00000265354/1-508 ITNYLAPVSA SVSPSAVSSA NGTVLKSTGS GPVSSGGLMQ LPTSFTLMPG BACU017972/1-404 ITNYLAPVSA SVSPSAVSSA NGTVLKSTGS GPVSSGGLMQ LPTSFTLMPG ENSBTAP00000016981/1-509 ITNYLAPVSA SVSPSAVSSA NGTVLKSTGS GPVSSGGLMQ LPTSFTLMPG 351 400 ENSTTRP00000006636/1-509 GAVAQQVPVQ AIQVHQAPQQ ASPSRDSSTD LTQTSSSGTV TLPATIMTSS bmy_00059T0/1-406 GAVAQQVPVQ AIQVHQAPQQ ASPSRDSSTD LTQTSSSGT- ---------- ENSP00000265354/1-508 GAVAQQVPVQ AIQVHQAPQQ ASPSRDSSTD LTQTSSSGTV TLPATIMTSS BACU017972/1-404 GAVAQQVPVQ AIQVHQAPQQ ASPSRDSSTD LTQTSSSGTV TLPATIMTSS ENSBTAP00000016981/1-509 GAVAQQVPVQ AIQVHQAPQQ ASPSRDSSTD LTQTSSSGTV TLPATIMTSS 401 450 ENSTTRP00000006636/1-509 VPTTVGGHMM YPSPHAVMYA PTSGLADGSL TVLNAFSQAP STMQVSHSQV bmy_00059T0/1-406 ---------- ---------- ---GIARSSV TFLLCL---- ---------- ENSP00000265354/1-508 VPTTVGGHMM YPSPHAVMYA PTSGLGDGSL TVLNAFSQAP STMQVSHSQV BACU017972/1-404 VPTTVGGHMM YPSPHAVMYA PTSGLADGSL TVLNAFSQAP STMQVSHSQV ENSBTAP00000016981/1-509 VPTTVGGHMM YPSPHAVMYA PTSGLADGSL TVLNAFSQAP STMQVSHSQV 451 500 ENSTTRP00000006636/1-509 QEQXXXXXXX XXXXXXXXXX XXXXXXXXXM AVIGQQAGHS SNLTELQVVN bmy_00059T0/1-406 ---------- ---------- ------LHEA ---------- ---------- ENSP00000265354/1-508 QEPGGVPQVF LTASSGTVQI PVSAVQLHQM AVIGQQAGSS SNLTELQVVN BACU017972/1-404 QEQGGVPQVF LTAPSGTVQI PVSAVQLHQM AVIGQQAGSS SNLTELQVVN ENSBTAP00000016981/1-509 QEQGGVPQVF LTAPSGTVQI PVSAVQLHQM AVIGQQAGSS SNLTELQVVN 501 550 ENSTTRP00000006636/1-509 LDAAHSTKSD bmy_00059T0/1-406 ---------- ENSP00000265354/1-508 LDTAHSTKSE BACU017972/1-404 LDAAHSTKSD ENSBTAP00000016981/1-509 LDAAHSTKSD